Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18690

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
4,644,805	-				+0.4
4,644,805	-				+0.1
4,644,814	+				-0.7
4,644,824	+				-2.5
4,644,866	-				-0.9
4,644,866	-				+0.3
4,644,996	-		CA265_RS18685	0.18	-1.5
4,645,029	+		CA265_RS18685	0.23	+0.8
4,645,031	+		CA265_RS18685	0.23	+0.6
4,645,053	-		CA265_RS18685	0.26	-0.4
4,645,075	-		CA265_RS18685	0.29	-1.2
4,645,095	+		CA265_RS18685	0.32	+1.4
4,645,261	-		CA265_RS18685	0.57	-1.2
4,645,278	-		CA265_RS18685	0.60	-1.6
4,645,281	+		CA265_RS18685	0.60	+0.1
4,645,297	+		CA265_RS18685	0.62	-1.0
4,645,332	+		CA265_RS18685	0.68	-1.7
4,645,386	+		CA265_RS18685	0.76	-0.8
4,645,401	+		CA265_RS18685	0.78	-2.8
4,645,410	+		CA265_RS18685	0.79	+0.0
4,645,480	+		CA265_RS18685	0.90	-1.0
4,645,520	-				-2.5
4,645,553	-				+0.2
4,645,601	-				-0.2
4,645,622	-				-0.7
4,645,675	+				+0.1
4,645,703	+				+0.1
4,645,703	+				-0.7
4,645,704	-				-0.6
4,645,704	-				+0.0
4,645,732	+				-0.0
4,645,744	-				+0.3
4,645,808	+				+1.6
4,645,809	-				-0.1
4,645,826	+				+1.1
4,645,827	-				-1.0
4,645,844	+				-0.2
4,645,849	+				+0.3
4,645,868	+		CA265_RS18690	0.11	+1.1
4,645,902	+		CA265_RS18690	0.12	-1.2
4,645,926	+		CA265_RS18690	0.13	-0.1
4,646,102	-		CA265_RS18690	0.22	+0.1
4,646,170	+		CA265_RS18690	0.25	-1.3
4,646,229	-		CA265_RS18690	0.28	-0.1
4,646,231	+		CA265_RS18690	0.28	-0.3
4,646,242	+		CA265_RS18690	0.28	+0.4
4,646,303	+		CA265_RS18690	0.31	+0.6
4,646,333	-		CA265_RS18690	0.32	-2.2
4,646,334	+		CA265_RS18690	0.32	+0.4
4,646,334	+		CA265_RS18690	0.32	+1.1
4,646,492	-		CA265_RS18690	0.40	-0.2
4,646,512	+		CA265_RS18690	0.41	+0.5
4,646,512	+		CA265_RS18690	0.41	-0.9
4,646,513	-		CA265_RS18690	0.41	-1.1
4,646,553	+		CA265_RS18690	0.43	+0.1
4,646,553	+		CA265_RS18690	0.43	+0.3
4,646,554	-		CA265_RS18690	0.43	-1.0
4,646,658	-		CA265_RS18690	0.48	-0.1
4,646,670	+		CA265_RS18690	0.48	-0.4
4,646,707	-		CA265_RS18690	0.50	-0.5
4,646,803	-		CA265_RS18690	0.54	-0.4
4,646,803	-		CA265_RS18690	0.54	-0.7
4,646,808	+		CA265_RS18690	0.55	-0.7
4,646,808	+		CA265_RS18690	0.55	-0.5
4,646,809	-		CA265_RS18690	0.55	-0.1
4,646,824	+		CA265_RS18690	0.55	-0.5
4,646,838	+		CA265_RS18690	0.56	+0.1
4,646,845	+		CA265_RS18690	0.56	+0.6
4,646,846	-		CA265_RS18690	0.56	-0.5
4,646,901	+		CA265_RS18690	0.59	+0.2
4,646,950	+		CA265_RS18690	0.61	+1.3
4,646,950	+		CA265_RS18690	0.61	+0.5
4,647,132	-		CA265_RS18690	0.70	+1.5
4,647,139	+		CA265_RS18690	0.70	+1.4
4,647,140	-		CA265_RS18690	0.70	-0.0
4,647,201	-		CA265_RS18690	0.73	-0.1
4,647,215	+		CA265_RS18690	0.74	-0.2
4,647,234	+		CA265_RS18690	0.75	+0.6
4,647,319	+		CA265_RS18690	0.79	-0.1
4,647,348	+		CA265_RS18690	0.80	+0.1
4,647,348	+		CA265_RS18690	0.80	-2.6
4,647,354	+		CA265_RS18690	0.80	-1.4
4,647,378	-		CA265_RS18690	0.81	-0.1
4,647,402	-		CA265_RS18690	0.82	-0.2
4,647,423	+		CA265_RS18690	0.83	+1.3
4,647,435	-		CA265_RS18690	0.84	-0.4
4,647,435	-		CA265_RS18690	0.84	+0.0
4,647,512	-		CA265_RS18690	0.88	-1.1
4,647,524	+		CA265_RS18690	0.88	-0.1
4,647,645	+				-1.0
4,647,645	+				+1.0
4,647,660	+				-0.9
4,647,660	+				-0.1
4,647,727	+				-0.2
4,647,767	-				+1.3
4,647,770	+				-0.5
4,647,771	-				-1.0
4,647,836	+				-0.1
4,647,952	-				-0.3
4,647,964	+				-0.1
4,648,032	+				-0.0
4,648,032	+				-1.0
4,648,033	-				+0.4
4,648,236	-				-0.8
4,648,288	+				-0.2
4,648,289	-				-1.0
4,648,323	-				+0.7
4,648,373	+		CA265_RS18695	0.12	+0.1
4,648,373	+		CA265_RS18695	0.12	-0.1
4,648,408	-		CA265_RS18695	0.13	-0.4
4,648,421	-		CA265_RS18695	0.13	+0.5
4,648,438	+		CA265_RS18695	0.14	-0.1
4,648,439	-		CA265_RS18695	0.14	+0.5
4,648,439	-		CA265_RS18695	0.14	+0.1
4,648,439	-		CA265_RS18695	0.14	+1.1
4,648,439	-		CA265_RS18695	0.14	+0.3
4,648,474	+				+3.1
4,648,475	-		CA265_RS18695	0.15	-0.2
4,648,496	+		CA265_RS18695	0.16	+0.6
4,648,507	+		CA265_RS18695	0.17	-0.6
4,648,508	-		CA265_RS18695	0.17	-0.3
4,648,508	-		CA265_RS18695	0.17	-0.6
4,648,512	-		CA265_RS18695	0.17	-0.2
4,648,516	+		CA265_RS18695	0.17	+0.9
4,648,516	+		CA265_RS18695	0.17	-1.0
4,648,561	-		CA265_RS18695	0.19	+0.2
4,648,564	+		CA265_RS18695	0.19	+0.8
4,648,565	-		CA265_RS18695	0.19	-0.1
4,648,565	-		CA265_RS18695	0.19	-1.3
4,648,595	+		CA265_RS18695	0.20	-0.0
4,648,619	+		CA265_RS18695	0.21	-0.2
4,648,630	+		CA265_RS18695	0.21	+0.5
4,648,633	-		CA265_RS18695	0.22	-0.0
4,648,637	-		CA265_RS18695	0.22	-1.7
4,648,637	-		CA265_RS18695	0.22	-1.0