Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13780

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
3,451,863	+		CA265_RS13775	0.62	+1.3
3,451,872	+		CA265_RS13775	0.63	-0.2
3,451,909	-		CA265_RS13775	0.65	-2.2
3,451,917	+		CA265_RS13775	0.66	-1.7
3,451,917	+		CA265_RS13775	0.66	-0.1
3,451,918	-		CA265_RS13775	0.66	-0.7
3,451,934	-		CA265_RS13775	0.67	-1.2
3,452,027	-		CA265_RS13775	0.72	-0.4
3,452,027	-		CA265_RS13775	0.72	-0.0
3,452,092	-		CA265_RS13775	0.76	+0.4
3,452,092	-		CA265_RS13775	0.76	-0.4
3,452,106	-		CA265_RS13775	0.77	+0.1
3,452,183	+		CA265_RS13775	0.81	-1.0
3,452,183	+		CA265_RS13775	0.81	+0.1
3,452,254	+		CA265_RS13775	0.86	-0.3
3,452,393	+				-0.7
3,452,493	+				-0.9
3,452,543	-				+0.2
3,452,580	-				-0.3
3,452,580	-				+0.1
3,452,580	-				-2.7
3,452,580	-				+0.1
3,452,581	+				-0.4
3,452,581	+				+0.7
3,452,582	-				-0.2
3,452,582	-				-0.2
3,452,582	-				-0.9
3,452,620	+				-0.4
3,452,621	-				-0.4
3,452,631	-				+0.5
3,452,657	+				+0.4
3,452,657	+				-0.1
3,452,657	+				+0.4
3,452,659	+				-0.8
3,452,659	+				-0.4
3,452,695	+				-0.4
3,452,703	+				-0.2
3,452,704	-				+0.9
3,452,731	+				-0.4
3,452,830	+				-0.8
3,452,975	+				-0.4
3,452,980	+		CA265_RS13780	0.10	+0.4
3,453,029	-		CA265_RS13780	0.14	+0.4
3,453,031	+		CA265_RS13780	0.14	-0.1
3,453,032	-		CA265_RS13780	0.14	-0.7
3,453,043	+		CA265_RS13780	0.15	-0.6
3,453,059	-		CA265_RS13780	0.17	-0.1
3,453,178	-		CA265_RS13780	0.26	+0.3
3,453,217	+		CA265_RS13780	0.29	+0.6
3,453,217	+		CA265_RS13780	0.29	-1.2
3,453,217	+		CA265_RS13780	0.29	+0.6
3,453,217	+		CA265_RS13780	0.29	-0.1
3,453,225	-		CA265_RS13780	0.30	-0.8
3,453,245	-		CA265_RS13780	0.31	-0.9
3,453,304	+		CA265_RS13780	0.36	+1.1
3,453,304	+		CA265_RS13780	0.36	+0.3
3,453,308	-		CA265_RS13780	0.36	-0.3
3,453,382	+		CA265_RS13780	0.42	+0.8
3,453,382	+		CA265_RS13780	0.42	+1.0
3,453,386	-		CA265_RS13780	0.43	+0.8
3,453,412	+		CA265_RS13780	0.45	+0.4
3,453,412	+		CA265_RS13780	0.45	-0.4
3,453,412	+		CA265_RS13780	0.45	-0.4
3,453,456	-		CA265_RS13780	0.48	+0.4
3,453,456	-		CA265_RS13780	0.48	+0.1
3,453,456	-		CA265_RS13780	0.48	+0.2
3,453,456	-		CA265_RS13780	0.48	+0.5
3,453,457	+		CA265_RS13780	0.48	+0.5
3,453,458	-		CA265_RS13780	0.48	+0.1
3,453,521	+		CA265_RS13780	0.53	+0.2
3,453,521	+		CA265_RS13780	0.53	+0.5
3,453,522	-		CA265_RS13780	0.53	+0.6
3,453,522	-		CA265_RS13780	0.53	+0.3
3,453,537	+		CA265_RS13780	0.55	-0.2
3,453,598	+		CA265_RS13780	0.59	+0.6
3,453,647	-		CA265_RS13780	0.63	+0.4
3,453,647	-		CA265_RS13780	0.63	+0.7
3,453,668	-		CA265_RS13780	0.65	-1.3
3,453,706	+		CA265_RS13780	0.68	-1.3
3,453,746	-		CA265_RS13780	0.71	-0.8
3,453,756	-		CA265_RS13780	0.72	-0.1
3,453,769	+		CA265_RS13780	0.73	+0.0
3,453,792	-		CA265_RS13780	0.75	-0.1
3,453,857	+		CA265_RS13780	0.80	+0.3
3,453,857	+		CA265_RS13780	0.80	-0.1
3,453,858	-		CA265_RS13780	0.80	-0.0
3,453,967	+		CA265_RS13780	0.89	+0.4
3,453,967	+		CA265_RS13780	0.89	+0.4
3,453,968	-		CA265_RS13780	0.89	-1.6
3,453,995	-				-0.8
3,454,040	-				-0.7
3,454,040	-				+0.9
3,454,041	+				+0.2
3,454,042	-				+1.0
3,454,090	+				-0.3
3,454,090	+				+0.4
3,454,109	-				-0.3
3,454,153	+				+0.3
3,454,153	+				-0.0
3,454,171	+				+0.6
3,454,191	-				-0.8
3,454,209	-				+0.8
3,454,230	-				-0.0
3,454,233	-				-0.6
3,454,264	-				-0.0
3,454,264	-				-0.3
3,454,298	+				+0.7
3,454,299	-				-0.6
3,454,299	-				+0.1
3,454,398	-				-0.4
3,454,403	+				+0.6
3,454,404	-				+0.3
3,454,406	+				+0.2
3,454,407	-				+0.0
3,454,467	+				+0.6
3,454,528	+		CA265_RS13785	0.11	-0.9
3,454,677	-		CA265_RS13785	0.17	+0.1
3,454,677	-		CA265_RS13785	0.17	+0.2
3,454,728	+		CA265_RS13785	0.19	+0.5
3,454,728	+		CA265_RS13785	0.19	-0.4
3,454,732	+		CA265_RS13785	0.19	+0.0
3,454,746	-		CA265_RS13785	0.19	+0.1
3,454,746	-		CA265_RS13785	0.19	+0.3
3,454,760	+		CA265_RS13785	0.20	+0.5
3,454,760	+		CA265_RS13785	0.20	+0.4
3,454,760	+		CA265_RS13785	0.20	-1.4
3,454,761	-		CA265_RS13785	0.20	-0.8
3,454,862	+		CA265_RS13785	0.23	-1.2
3,454,862	+		CA265_RS13785	0.23	+0.3
3,454,933	+		CA265_RS13785	0.26	+0.6
3,454,933	+		CA265_RS13785	0.26	+0.3
3,454,934	-		CA265_RS13785	0.26	+0.2
3,454,939	+		CA265_RS13785	0.26	+0.5
3,454,940	-		CA265_RS13785	0.26	-0.6
3,454,940	-		CA265_RS13785	0.26	-0.2
3,454,949	+		CA265_RS13785	0.26	+0.6
3,455,031	+		CA265_RS13785	0.29	+0.2