Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13770

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
3,446,664	+				-0.4
3,446,664	+				-0.1
3,446,715	+				+0.2
3,446,884	+		CA265_RS13765	0.26	+1.4
3,446,884	+		CA265_RS13765	0.26	+0.6
3,446,885	-		CA265_RS13765	0.26	-0.5
3,446,935	-		CA265_RS13765	0.31	+1.6
3,446,974	+		CA265_RS13765	0.35	+2.2
3,446,976	+		CA265_RS13765	0.35	+0.6
3,446,976	+		CA265_RS13765	0.35	-0.1
3,446,976	+				+0.7
3,446,977	-		CA265_RS13765	0.35	+0.3
3,446,977	-		CA265_RS13765	0.35	-0.2
3,446,986	-		CA265_RS13765	0.36	-0.1
3,446,994	+				+1.4
3,446,995	-		CA265_RS13765	0.37	+0.6
3,447,034	-		CA265_RS13765	0.41	-0.3
3,447,128	+		CA265_RS13765	0.50	+0.1
3,447,141	-		CA265_RS13765	0.52	-0.3
3,447,143	+		CA265_RS13765	0.52	+0.2
3,447,162	+		CA265_RS13765	0.54	-0.9
3,447,162	+		CA265_RS13765	0.54	+0.7
3,447,162	+		CA265_RS13765	0.54	+0.4
3,447,163	-		CA265_RS13765	0.54	+0.2
3,447,164	+		CA265_RS13765	0.54	-0.5
3,447,164	+		CA265_RS13765	0.54	-1.7
3,447,192	+		CA265_RS13765	0.57	+0.3
3,447,207	-		CA265_RS13765	0.58	+0.1
3,447,231	-		CA265_RS13765	0.61	+0.4
3,447,297	+		CA265_RS13765	0.67	-0.5
3,447,418	+		CA265_RS13765	0.79	+0.4
3,447,455	+		CA265_RS13765	0.83	-0.5
3,447,456	-		CA265_RS13765	0.83	+0.9
3,447,456	-		CA265_RS13765	0.83	+0.6
3,447,456	-		CA265_RS13765	0.83	+0.5
3,447,472	-		CA265_RS13765	0.85	-0.3
3,447,472	-		CA265_RS13765	0.85	+0.3
3,447,562	-				-1.0
3,447,605	+				+0.3
3,447,629	-				-0.1
3,447,630	+				-0.9
3,447,630	+				-0.6
3,447,631	-				+0.1
3,447,631	-				-1.2
3,447,743	+				+0.1
3,447,773	-				+0.6
3,447,853	-				+0.6
3,447,861	+				-0.7
3,447,928	-				+0.9
3,448,009	-		CA265_RS13770	0.13	-0.3
3,448,039	-		CA265_RS13770	0.14	-0.2
3,448,072	+		CA265_RS13770	0.15	-0.3
3,448,145	-		CA265_RS13770	0.17	-1.1
3,448,154	+		CA265_RS13770	0.18	-0.3
3,448,155	-		CA265_RS13770	0.18	+1.2
3,448,201	-		CA265_RS13770	0.19	+0.4
3,448,202	+		CA265_RS13770	0.19	+0.2
3,448,221	-		CA265_RS13770	0.20	+0.4
3,448,248	-		CA265_RS13770	0.21	-0.0
3,448,271	-		CA265_RS13770	0.22	+0.4
3,448,353	+		CA265_RS13770	0.24	-1.2
3,448,353	+		CA265_RS13770	0.24	-0.6
3,448,516	-		CA265_RS13770	0.30	-0.0
3,448,580	-		CA265_RS13770	0.32	-1.2
3,448,694	+		CA265_RS13770	0.36	-0.1
3,448,696	+		CA265_RS13770	0.36	+1.4
3,448,696	+		CA265_RS13770	0.36	-0.5
3,448,696	+		CA265_RS13770	0.36	-0.2
3,448,697	-		CA265_RS13770	0.36	+0.9
3,448,708	-		CA265_RS13770	0.36	+0.6
3,448,714	-		CA265_RS13770	0.37	-0.5
3,448,749	+		CA265_RS13770	0.38	-0.1
3,448,749	+		CA265_RS13770	0.38	-2.1
3,448,750	-		CA265_RS13770	0.38	-0.3
3,448,750	-		CA265_RS13770	0.38	-0.0
3,448,750	-		CA265_RS13770	0.38	-0.6
3,448,866	+		CA265_RS13770	0.42	-0.7
3,448,882	+		CA265_RS13770	0.42	-0.4
3,448,882	+		CA265_RS13770	0.42	-0.5
3,448,887	-		CA265_RS13770	0.42	-0.6
3,448,983	-		CA265_RS13770	0.46	-1.6
3,449,083	+		CA265_RS13770	0.49	-0.5
3,449,098	+		CA265_RS13770	0.49	-1.3
3,449,099	-		CA265_RS13770	0.49	+0.4
3,449,105	+		CA265_RS13770	0.50	+0.9
3,449,163	+		CA265_RS13770	0.52	+0.7
3,449,183	+		CA265_RS13770	0.52	-0.2
3,449,244	+		CA265_RS13770	0.54	-0.6
3,449,261	+		CA265_RS13770	0.55	-0.3
3,449,262	-		CA265_RS13770	0.55	+0.7
3,449,319	+		CA265_RS13770	0.57	-0.1
3,449,320	-		CA265_RS13770	0.57	+1.8
3,449,320	-		CA265_RS13770	0.57	-0.2
3,449,472	+		CA265_RS13770	0.62	-0.6
3,449,511	+		CA265_RS13770	0.63	-0.7
3,449,511	+		CA265_RS13770	0.63	+0.6
3,449,511	+		CA265_RS13770	0.63	+0.3
3,449,511	+		CA265_RS13770	0.63	-0.4
3,449,512	-		CA265_RS13770	0.63	+0.0
3,449,512	-		CA265_RS13770	0.63	-0.5
3,449,513	+		CA265_RS13770	0.63	+0.3
3,449,514	-		CA265_RS13770	0.63	+0.3
3,449,514	-		CA265_RS13770	0.63	-2.2
3,449,514	-		CA265_RS13770	0.63	-0.0
3,449,514	-		CA265_RS13770	0.63	+1.3
3,449,557	+		CA265_RS13770	0.65	+0.6
3,449,558	-		CA265_RS13770	0.65	+0.2
3,449,615	-		CA265_RS13770	0.67	+0.1
3,449,686	-		CA265_RS13770	0.69	+0.1
3,449,728	-		CA265_RS13770	0.71	+0.0
3,449,816	-		CA265_RS13770	0.74	+0.5
3,449,827	+		CA265_RS13770	0.74	-0.1
3,449,891	-		CA265_RS13770	0.76	+0.4
3,449,895	-		CA265_RS13770	0.76	-0.5
3,450,038	-		CA265_RS13770	0.81	+0.0
3,450,055	-		CA265_RS13770	0.82	+0.3
3,450,120	+		CA265_RS13770	0.84	-0.1
3,450,126	-		CA265_RS13770	0.84	-1.0
3,450,264	-		CA265_RS13770	0.89	-0.1
3,450,340	-				-0.2
3,450,348	+				-0.8
3,450,349	-				+0.1
3,450,404	-				-0.6
3,450,404	-				+0.0
3,450,444	+				-0.7
3,450,493	-				+0.2
3,450,558	+				-0.4
3,450,559	-				+0.2
3,450,594	-				+0.7
3,450,618	-				+0.3
3,450,658	+				-0.2
3,450,659	-				-0.9
3,450,663	-				-0.6
3,450,669	-				-0.2
3,450,707	-				-0.1
3,450,804	+				-0.4
3,450,851	-				-0.3
3,450,851	-				+1.1
3,450,930	-				+0.3
3,450,930	-				+0.4
3,450,982	-				-0.8
3,450,982	-				+0.2
3,450,983	+				+0.1
3,450,983	+				-0.2
3,450,983	+				-1.3
3,450,984	-				+0.1
3,450,988	-				+0.4
3,451,047	+		CA265_RS13775	0.13	-0.8
3,451,052	-		CA265_RS13775	0.14	-1.6
3,451,052	-		CA265_RS13775	0.14	-0.0
3,451,119	+		CA265_RS13775	0.18	-2.3
3,451,120	-		CA265_RS13775	0.18	+0.3
3,451,120	-		CA265_RS13775	0.18	+0.0
3,451,149	+		CA265_RS13775	0.20	-0.2
3,451,181	+		CA265_RS13775	0.21	-0.6
3,451,185	+		CA265_RS13775	0.22	-0.9
3,451,482	+		CA265_RS13775	0.39	-0.3
3,451,489	-		CA265_RS13775	0.40	+0.7
3,451,505	+		CA265_RS13775	0.41	-0.4
3,451,560	-		CA265_RS13775	0.44	+0.4
3,451,570	+		CA265_RS13775	0.45	-0.4
3,451,570	+		CA265_RS13775	0.45	-0.6
3,451,571	-		CA265_RS13775	0.45	+0.1
3,451,571	-		CA265_RS13775	0.45	-0.9