Experiment: R2A with Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02260 and CA265_RS02265 are separated by 46 nucleotides CA265_RS02265 and CA265_RS02270 are separated by 102 nucleotides CA265_RS02270 and CA265_RS02275 are separated by 203 nucleotides CA265_RS02275 and CA265_RS02280 are separated by 209 nucleotides
CA265_RS02260: CA265_RS02260 - GNAT family N-acetyltransferase, at 568,859 to 569,389
_RS02260
CA265_RS02265: CA265_RS02265 - damage-inducible protein DinB, at 569,436 to 569,936
_RS02265
CA265_RS02270: CA265_RS02270 - DUF4199 domain-containing protein, at 570,039 to 570,587
_RS02270
CA265_RS02275: CA265_RS02275 - helix-turn-helix transcriptional regulator, at 570,791 to 571,261
_RS02275
CA265_RS02280: CA265_RS02280 - hypothetical protein, at 571,471 to 572,259
_RS02280
Position (kb) 570
571 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 569.054 kb on - strand, within CA265_RS02260 at 569.106 kb on + strand, within CA265_RS02260 at 569.106 kb on + strand, within CA265_RS02260 at 569.120 kb on - strand, within CA265_RS02260 at 569.167 kb on + strand, within CA265_RS02260 at 569.168 kb on - strand, within CA265_RS02260 at 569.248 kb on + strand, within CA265_RS02260 at 569.260 kb on + strand, within CA265_RS02260 at 569.287 kb on - strand, within CA265_RS02260 at 569.406 kb on - strand at 569.467 kb on + strand at 569.468 kb on - strand at 569.469 kb on + strand at 569.469 kb on + strand at 569.469 kb on + strand at 569.469 kb on + strand at 569.470 kb on - strand at 569.471 kb on + strand at 569.472 kb on - strand at 569.504 kb on - strand, within CA265_RS02265 at 569.544 kb on + strand, within CA265_RS02265 at 569.545 kb on - strand, within CA265_RS02265 at 569.693 kb on + strand, within CA265_RS02265 at 569.734 kb on + strand, within CA265_RS02265 at 569.785 kb on + strand, within CA265_RS02265 at 569.820 kb on - strand, within CA265_RS02265 at 569.851 kb on - strand, within CA265_RS02265 at 569.874 kb on + strand, within CA265_RS02265 at 569.896 kb on - strand at 569.917 kb on - strand at 569.927 kb on + strand at 569.931 kb on + strand at 569.973 kb on - strand at 569.983 kb on + strand at 569.988 kb on + strand at 570.023 kb on - strand at 570.023 kb on - strand at 570.120 kb on - strand, within CA265_RS02270 at 570.271 kb on + strand, within CA265_RS02270 at 570.271 kb on + strand, within CA265_RS02270 at 570.271 kb on + strand, within CA265_RS02270 at 570.272 kb on - strand, within CA265_RS02270 at 570.272 kb on - strand, within CA265_RS02270 at 570.272 kb on - strand, within CA265_RS02270 at 570.272 kb on - strand, within CA265_RS02270 at 570.297 kb on + strand, within CA265_RS02270 at 570.298 kb on - strand, within CA265_RS02270 at 570.298 kb on - strand, within CA265_RS02270 at 570.301 kb on + strand, within CA265_RS02270 at 570.355 kb on + strand, within CA265_RS02270 at 570.356 kb on - strand, within CA265_RS02270 at 570.404 kb on - strand, within CA265_RS02270 at 570.407 kb on + strand, within CA265_RS02270 at 570.408 kb on - strand, within CA265_RS02270 at 570.459 kb on - strand, within CA265_RS02270 at 570.459 kb on - strand, within CA265_RS02270 at 570.505 kb on + strand, within CA265_RS02270 at 570.574 kb on - strand at 570.596 kb on - strand at 570.596 kb on - strand at 570.614 kb on - strand at 570.614 kb on - strand at 570.623 kb on - strand at 570.634 kb on + strand at 570.635 kb on - strand at 570.683 kb on + strand at 570.735 kb on + strand at 570.736 kb on - strand at 570.889 kb on + strand, within CA265_RS02275 at 570.905 kb on + strand, within CA265_RS02275 at 570.911 kb on + strand, within CA265_RS02275 at 570.912 kb on - strand, within CA265_RS02275 at 570.982 kb on + strand, within CA265_RS02275 at 570.983 kb on - strand, within CA265_RS02275 at 571.012 kb on + strand, within CA265_RS02275 at 571.050 kb on - strand, within CA265_RS02275 at 571.053 kb on - strand, within CA265_RS02275 at 571.060 kb on + strand, within CA265_RS02275 at 571.076 kb on - strand, within CA265_RS02275 at 571.088 kb on + strand, within CA265_RS02275 at 571.089 kb on - strand, within CA265_RS02275 at 571.090 kb on + strand, within CA265_RS02275 at 571.109 kb on - strand, within CA265_RS02275 at 571.116 kb on - strand, within CA265_RS02275 at 571.129 kb on - strand, within CA265_RS02275 at 571.150 kb on + strand, within CA265_RS02275 at 571.151 kb on - strand, within CA265_RS02275 at 571.179 kb on - strand, within CA265_RS02275 at 571.429 kb on - strand at 571.456 kb on + strand at 571.460 kb on + strand at 571.464 kb on + strand at 571.464 kb on + strand at 571.465 kb on - strand at 571.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nalidixic 0.008 mg/ml remove 569,054 - CA265_RS02260 0.37 -0.5 569,106 + CA265_RS02260 0.47 -0.1 569,106 + CA265_RS02260 0.47 -0.8 569,120 - CA265_RS02260 0.49 -0.3 569,167 + CA265_RS02260 0.58 -0.2 569,168 - CA265_RS02260 0.58 -1.3 569,248 + CA265_RS02260 0.73 +0.7 569,260 + CA265_RS02260 0.76 +0.1 569,287 - CA265_RS02260 0.81 -2.0 569,406 - -1.3 569,467 + -0.1 569,468 - +0.2 569,469 + -1.0 569,469 + -0.5 569,469 + -0.4 569,469 + -1.0 569,470 - -0.5 569,471 + -1.6 569,472 - -0.3 569,504 - CA265_RS02265 0.14 -0.3 569,544 + CA265_RS02265 0.22 +0.5 569,545 - CA265_RS02265 0.22 -0.7 569,693 + CA265_RS02265 0.51 -0.0 569,734 + CA265_RS02265 0.59 -0.1 569,785 + CA265_RS02265 0.70 -1.4 569,820 - CA265_RS02265 0.77 -0.8 569,851 - CA265_RS02265 0.83 +0.5 569,874 + CA265_RS02265 0.87 +0.0 569,896 - +3.1 569,917 - +0.2 569,927 + -0.2 569,931 + +0.0 569,973 - -1.0 569,983 + -0.5 569,988 + +0.0 570,023 - -0.4 570,023 - +0.2 570,120 - CA265_RS02270 0.15 -0.2 570,271 + CA265_RS02270 0.42 -0.8 570,271 + CA265_RS02270 0.42 -0.5 570,271 + CA265_RS02270 0.42 -1.0 570,272 - CA265_RS02270 0.42 -0.6 570,272 - CA265_RS02270 0.42 -1.8 570,272 - CA265_RS02270 0.42 -0.5 570,272 - CA265_RS02270 0.42 +0.4 570,297 + CA265_RS02270 0.47 +0.0 570,298 - CA265_RS02270 0.47 -0.8 570,298 - CA265_RS02270 0.47 -0.2 570,301 + CA265_RS02270 0.48 +0.2 570,355 + CA265_RS02270 0.58 -0.1 570,356 - CA265_RS02270 0.58 +0.8 570,404 - CA265_RS02270 0.66 -0.4 570,407 + CA265_RS02270 0.67 -0.1 570,408 - CA265_RS02270 0.67 -0.1 570,459 - CA265_RS02270 0.77 -1.4 570,459 - CA265_RS02270 0.77 +0.2 570,505 + CA265_RS02270 0.85 -1.7 570,574 - -0.0 570,596 - +0.0 570,596 - -0.3 570,614 - -0.5 570,614 - -0.9 570,623 - -0.1 570,634 + -0.4 570,635 - +0.4 570,683 + -0.5 570,735 + +1.1 570,736 - +1.0 570,889 + CA265_RS02275 0.21 -0.5 570,905 + CA265_RS02275 0.24 +0.0 570,911 + CA265_RS02275 0.25 +0.3 570,912 - CA265_RS02275 0.26 +0.3 570,982 + CA265_RS02275 0.41 +0.8 570,983 - CA265_RS02275 0.41 +0.4 571,012 + CA265_RS02275 0.47 +0.2 571,050 - CA265_RS02275 0.55 +0.5 571,053 - CA265_RS02275 0.56 -0.2 571,060 + CA265_RS02275 0.57 -0.0 571,076 - CA265_RS02275 0.61 +0.8 571,088 + CA265_RS02275 0.63 +0.0 571,089 - CA265_RS02275 0.63 -0.2 571,090 + CA265_RS02275 0.63 +0.2 571,109 - CA265_RS02275 0.68 +0.3 571,116 - CA265_RS02275 0.69 +0.0 571,129 - CA265_RS02275 0.72 +0.3 571,150 + CA265_RS02275 0.76 +1.4 571,151 - CA265_RS02275 0.76 -0.1 571,179 - CA265_RS02275 0.82 -0.0 571,429 - -0.5 571,456 + +0.4 571,460 + -0.3 571,464 + -0.1 571,464 + +0.0 571,465 - -0.3 571,466 + -0.1
Or see this region's nucleotide sequence