Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3359 and Ac3H11_3360 are separated by 652 nucleotides Ac3H11_3360 and Ac3H11_3361 are separated by 16 nucleotides
Ac3H11_3359 - response regulatory protein, at 42,152 to 42,793
_3359
Ac3H11_3360 - Response regulator receiver:Transcriptional regulatory protein, C terminal, at 43,446 to 44,168
_3360
Ac3H11_3361 - Copper sensory histidine kinase CpxA, at 44,185 to 45,468
_3361
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.702 kb on + strand, within Ac3H11_3359 at 42.703 kb on - strand, within Ac3H11_3359 at 42.862 kb on + strand at 42.862 kb on + strand at 42.862 kb on + strand at 42.862 kb on + strand at 42.863 kb on - strand at 42.987 kb on + strand at 42.987 kb on + strand at 42.987 kb on + strand at 42.987 kb on + strand at 42.987 kb on + strand at 42.987 kb on + strand at 42.987 kb on + strand at 42.988 kb on - strand at 42.988 kb on - strand at 42.988 kb on - strand at 42.988 kb on - strand at 42.999 kb on + strand at 43.069 kb on + strand at 43.070 kb on - strand at 43.157 kb on + strand at 43.158 kb on - strand at 43.187 kb on - strand at 43.187 kb on - strand at 43.187 kb on - strand at 43.298 kb on + strand at 43.299 kb on - strand at 43.300 kb on + strand at 43.347 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.419 kb on - strand at 43.434 kb on + strand at 43.434 kb on + strand at 43.434 kb on + strand at 43.434 kb on + strand at 43.434 kb on + strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.506 kb on + strand at 43.507 kb on - strand at 43.507 kb on - strand at 43.764 kb on + strand, within Ac3H11_3360 at 43.765 kb on - strand, within Ac3H11_3360 at 43.944 kb on + strand, within Ac3H11_3360 at 43.944 kb on + strand, within Ac3H11_3360 at 44.142 kb on + strand at 44.142 kb on + strand at 44.142 kb on + strand at 44.143 kb on - strand at 44.143 kb on - strand at 44.143 kb on - strand at 44.219 kb on - strand at 44.624 kb on - strand, within Ac3H11_3361 at 44.644 kb on - strand, within Ac3H11_3361 at 44.990 kb on - strand, within Ac3H11_3361 at 45.158 kb on - strand, within Ac3H11_3361
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 42,702 + Ac3H11_3359 0.86 -0.1 42,703 - Ac3H11_3359 0.86 -0.7 42,862 + -0.4 42,862 + +1.1 42,862 + -1.0 42,862 + -3.0 42,863 - -2.3 42,987 + +0.5 42,987 + +0.3 42,987 + -0.2 42,987 + +1.0 42,987 + +0.4 42,987 + +1.7 42,987 + -0.1 42,988 - -0.4 42,988 - +0.3 42,988 - +0.2 42,988 - +0.2 42,999 + -2.2 43,069 + -0.7 43,070 - +0.2 43,157 + -1.3 43,158 - +0.7 43,187 - +0.6 43,187 - -0.7 43,187 - -1.4 43,298 + +0.4 43,299 - -1.2 43,300 + +2.4 43,347 + +0.3 43,418 + -2.0 43,418 + +0.5 43,418 + -0.0 43,418 + +0.2 43,418 + +0.0 43,418 + +0.7 43,419 - -0.8 43,434 + +0.3 43,434 + +0.0 43,434 + +0.2 43,434 + +1.1 43,434 + +1.1 43,435 - +0.5 43,435 - +0.8 43,435 - -1.7 43,435 - -0.3 43,435 - -0.6 43,435 - +0.1 43,435 - -0.1 43,506 + -0.1 43,507 - +0.4 43,507 - -0.6 43,764 + Ac3H11_3360 0.44 -0.2 43,765 - Ac3H11_3360 0.44 -0.7 43,944 + Ac3H11_3360 0.69 -1.0 43,944 + Ac3H11_3360 0.69 -0.7 44,142 + -0.6 44,142 + -0.7 44,142 + +0.4 44,143 - -1.0 44,143 - +0.3 44,143 - -0.3 44,219 - -3.4 44,624 - Ac3H11_3361 0.34 -1.8 44,644 - Ac3H11_3361 0.36 -2.6 44,990 - Ac3H11_3361 0.63 -0.3 45,158 - Ac3H11_3361 0.76 -1.5
Or see this region's nucleotide sequence