Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3197

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3196 and Ac3H11_3197 are separated by 128 nucleotides Ac3H11_3196 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 98,429 to 100,477 _3196 Ac3H11_3197 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 100,606 to 101,565 _3197 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1at 99.656 kb on + strand, within Ac3H11_3196at 99.657 kb on - strand, within Ac3H11_3196at 99.657 kb on - strand, within Ac3H11_3196at 99.657 kb on - strand, within Ac3H11_3196at 100.079 kb on + strand, within Ac3H11_3196at 100.527 kb on - strandat 100.529 kb on + strandat 100.533 kb on - strandat 100.547 kb on + strandat 100.590 kb on + strandat 100.612 kb on + strandat 100.613 kb on - strandat 100.778 kb on - strand, within Ac3H11_3197at 100.921 kb on + strand, within Ac3H11_3197at 100.922 kb on - strand, within Ac3H11_3197at 100.922 kb on - strand, within Ac3H11_3197at 101.098 kb on + strand, within Ac3H11_3197at 101.150 kb on - strand, within Ac3H11_3197at 101.150 kb on - strand, within Ac3H11_3197at 101.227 kb on + strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.450 kb on - strand, within Ac3H11_3197at 101.504 kb on - strandat 101.504 kb on - strandat 101.504 kb on - strandat 101.617 kb on + strandat 101.617 kb on + strandat 101.648 kb on - strandat 101.648 kb on - strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.669 kb on - strandat 101.834 kb on - strandat 102.551 kb on - strandat 102.551 kb on - strandat 102.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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99,656 + Ac3H11_3196 0.60 -0.0
99,657 - Ac3H11_3196 0.60 -0.7
99,657 - Ac3H11_3196 0.60 -0.3
99,657 - Ac3H11_3196 0.60 -0.1
100,079 + Ac3H11_3196 0.81 -0.2
100,527 - +1.6
100,529 + -0.2
100,533 - -0.5
100,547 + -2.4
100,590 + -0.1
100,612 + +1.3
100,613 - +1.7
100,778 - Ac3H11_3197 0.18 +0.9
100,921 + Ac3H11_3197 0.33 -0.5
100,922 - Ac3H11_3197 0.33 -0.2
100,922 - Ac3H11_3197 0.33 +1.4
101,098 + Ac3H11_3197 0.51 +0.1
101,150 - Ac3H11_3197 0.57 -1.5
101,150 - Ac3H11_3197 0.57 +1.1
101,227 + Ac3H11_3197 0.65 +0.6
101,228 - Ac3H11_3197 0.65 -0.4
101,228 - Ac3H11_3197 0.65 -0.5
101,228 - Ac3H11_3197 0.65 +0.1
101,228 - Ac3H11_3197 0.65 +0.2
101,228 - Ac3H11_3197 0.65 +0.1
101,450 - Ac3H11_3197 0.88 +0.0
101,504 - +0.7
101,504 - +0.1
101,504 - -0.3
101,617 + +0.2
101,617 + -0.3
101,648 - +0.2
101,648 - -0.1
101,668 + +0.2
101,668 + -1.1
101,668 + -0.1
101,669 - +0.0
101,834 - -0.4
102,551 - +0.7
102,551 - +0.6
102,551 - -0.4

Or see this region's nucleotide sequence