Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1232 and Ac3H11_1233 are separated by 181 nucleotides Ac3H11_1233 and Ac3H11_1234 are separated by 127 nucleotides Ac3H11_1234 and Ac3H11_1235 are separated by 54 nucleotides
Ac3H11_1232 - Adenylosuccinate lyase (EC 4.3.2.2), at 49,549 to 50,967
_1232
Ac3H11_1233 - YaeQ protein, at 51,149 to 51,709
_1233
Ac3H11_1234 - FIG00932085: hypothetical protein, at 51,837 to 52,142
_1234
Ac3H11_1235 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 52,197 to 52,631
_1235
Position (kb)
51
52 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 51.065 kb on + strand at 51.066 kb on - strand at 51.066 kb on - strand at 51.066 kb on - strand at 51.087 kb on - strand at 51.087 kb on - strand at 51.087 kb on - strand at 51.126 kb on + strand at 51.130 kb on + strand at 51.131 kb on - strand at 51.137 kb on + strand at 51.138 kb on - strand at 51.209 kb on + strand, within Ac3H11_1233 at 51.209 kb on + strand, within Ac3H11_1233 at 51.210 kb on - strand, within Ac3H11_1233 at 51.212 kb on + strand, within Ac3H11_1233 at 51.212 kb on + strand, within Ac3H11_1233 at 51.212 kb on + strand, within Ac3H11_1233 at 51.213 kb on - strand, within Ac3H11_1233 at 51.213 kb on - strand, within Ac3H11_1233 at 51.274 kb on + strand, within Ac3H11_1233 at 51.274 kb on + strand, within Ac3H11_1233 at 51.274 kb on + strand, within Ac3H11_1233 at 51.274 kb on + strand, within Ac3H11_1233 at 51.275 kb on - strand, within Ac3H11_1233 at 51.275 kb on - strand, within Ac3H11_1233 at 51.488 kb on + strand, within Ac3H11_1233 at 51.707 kb on + strand at 51.707 kb on + strand at 51.708 kb on - strand at 51.779 kb on + strand at 51.833 kb on - strand at 51.833 kb on - strand at 51.982 kb on + strand, within Ac3H11_1234 at 51.982 kb on + strand, within Ac3H11_1234 at 52.045 kb on + strand, within Ac3H11_1234 at 52.153 kb on + strand at 52.153 kb on + strand at 52.154 kb on - strand at 52.174 kb on + strand at 52.174 kb on + strand at 52.175 kb on - strand at 52.175 kb on - strand at 52.249 kb on + strand, within Ac3H11_1235 at 52.250 kb on - strand, within Ac3H11_1235 at 52.432 kb on + strand, within Ac3H11_1235 at 52.432 kb on + strand, within Ac3H11_1235 at 52.432 kb on + strand, within Ac3H11_1235 at 52.433 kb on - strand, within Ac3H11_1235 at 52.433 kb on - strand, within Ac3H11_1235 at 52.501 kb on + strand, within Ac3H11_1235 at 52.501 kb on + strand, within Ac3H11_1235 at 52.501 kb on + strand, within Ac3H11_1235 at 52.501 kb on + strand, within Ac3H11_1235 at 52.501 kb on + strand, within Ac3H11_1235 at 52.502 kb on - strand, within Ac3H11_1235 at 52.502 kb on - strand, within Ac3H11_1235 at 52.516 kb on + strand, within Ac3H11_1235 at 52.516 kb on + strand, within Ac3H11_1235 at 52.516 kb on + strand, within Ac3H11_1235 at 52.516 kb on + strand, within Ac3H11_1235 at 52.517 kb on - strand, within Ac3H11_1235 at 52.517 kb on - strand, within Ac3H11_1235 at 52.662 kb on + strand at 52.662 kb on + strand at 52.663 kb on - strand at 52.663 kb on - strand at 52.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 51,065 + -0.5 51,066 - -1.0 51,066 - +0.5 51,066 - +0.0 51,087 - -0.4 51,087 - +0.4 51,087 - -0.6 51,126 + -0.0 51,130 + -0.5 51,131 - -0.1 51,137 + +0.4 51,138 - -0.5 51,209 + Ac3H11_1233 0.11 +1.9 51,209 + Ac3H11_1233 0.11 +0.8 51,210 - Ac3H11_1233 0.11 -1.9 51,212 + Ac3H11_1233 0.11 +1.2 51,212 + Ac3H11_1233 0.11 +0.1 51,212 + Ac3H11_1233 0.11 -0.4 51,213 - Ac3H11_1233 0.11 +0.5 51,213 - Ac3H11_1233 0.11 +0.6 51,274 + Ac3H11_1233 0.22 +0.8 51,274 + Ac3H11_1233 0.22 -0.9 51,274 + Ac3H11_1233 0.22 -0.3 51,274 + Ac3H11_1233 0.22 +0.4 51,275 - Ac3H11_1233 0.22 -0.1 51,275 - Ac3H11_1233 0.22 -0.3 51,488 + Ac3H11_1233 0.60 +0.5 51,707 + -1.1 51,707 + +0.4 51,708 - +0.7 51,779 + -0.7 51,833 - +0.4 51,833 - +1.2 51,982 + Ac3H11_1234 0.47 -0.9 51,982 + Ac3H11_1234 0.47 -0.5 52,045 + Ac3H11_1234 0.68 -0.4 52,153 + +0.1 52,153 + +0.1 52,154 - -0.1 52,174 + -0.8 52,174 + -0.2 52,175 - -0.0 52,175 - +0.3 52,249 + Ac3H11_1235 0.12 +0.3 52,250 - Ac3H11_1235 0.12 -1.0 52,432 + Ac3H11_1235 0.54 +0.1 52,432 + Ac3H11_1235 0.54 -0.3 52,432 + Ac3H11_1235 0.54 +0.5 52,433 - Ac3H11_1235 0.54 -0.4 52,433 - Ac3H11_1235 0.54 +0.2 52,501 + Ac3H11_1235 0.70 +0.1 52,501 + Ac3H11_1235 0.70 -0.8 52,501 + Ac3H11_1235 0.70 -0.3 52,501 + Ac3H11_1235 0.70 -0.1 52,501 + Ac3H11_1235 0.70 -1.8 52,502 - Ac3H11_1235 0.70 -0.2 52,502 - Ac3H11_1235 0.70 -0.4 52,516 + Ac3H11_1235 0.73 +0.1 52,516 + Ac3H11_1235 0.73 -0.2 52,516 + Ac3H11_1235 0.73 -0.5 52,516 + Ac3H11_1235 0.73 +1.2 52,517 - Ac3H11_1235 0.74 -0.1 52,517 - Ac3H11_1235 0.74 +0.0 52,662 + +0.3 52,662 + -0.5 52,663 - +0.7 52,663 - +0.5 52,663 - +0.4
Or see this region's nucleotide sequence