Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26550

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26540 and AO353_26545 are separated by 220 nucleotidesAO353_26545 and AO353_26550 are separated by 2 nucleotidesAO353_26550 and AO353_26555 are separated by 64 nucleotides AO353_26540: AO353_26540 - enoyl-CoA hydratase, at 5,811,263 to 5,812,075 _26540 AO353_26545: AO353_26545 - YeeE/YedE, at 5,812,296 to 5,812,730 _26545 AO353_26550: AO353_26550 - hypothetical protein, at 5,812,733 to 5,813,146 _26550 AO353_26555: AO353_26555 - DHH family protein, at 5,813,211 to 5,814,125 _26555 Position (kb) 5812 5813 5814Strain fitness (log2 ratio) -2 -1 0 1at 5811.763 kb on + strand, within AO353_26540at 5811.763 kb on + strand, within AO353_26540at 5811.764 kb on - strand, within AO353_26540at 5811.764 kb on - strand, within AO353_26540at 5811.803 kb on - strand, within AO353_26540at 5811.918 kb on - strand, within AO353_26540at 5812.066 kb on - strandat 5812.103 kb on + strandat 5812.115 kb on + strandat 5812.115 kb on + strandat 5812.115 kb on + strandat 5812.116 kb on - strandat 5812.116 kb on - strandat 5812.116 kb on - strandat 5812.117 kb on + strandat 5812.117 kb on + strandat 5812.117 kb on + strandat 5812.117 kb on + strandat 5812.118 kb on - strandat 5812.140 kb on + strandat 5812.140 kb on + strandat 5812.196 kb on - strandat 5812.196 kb on - strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.249 kb on + strandat 5812.250 kb on - strandat 5812.250 kb on - strandat 5812.262 kb on + strandat 5812.262 kb on + strandat 5812.262 kb on + strandat 5812.262 kb on + strandat 5812.262 kb on + strandat 5812.263 kb on - strandat 5812.263 kb on - strandat 5812.263 kb on - strandat 5812.625 kb on - strand, within AO353_26545at 5812.691 kb on + strandat 5812.692 kb on - strandat 5812.785 kb on + strand, within AO353_26550at 5812.786 kb on - strand, within AO353_26550at 5813.029 kb on + strand, within AO353_26550at 5813.030 kb on - strand, within AO353_26550at 5813.212 kb on + strandat 5813.213 kb on - strandat 5813.241 kb on + strandat 5813.301 kb on + strandat 5813.302 kb on - strandat 5813.302 kb on - strandat 5813.302 kb on - strandat 5813.304 kb on + strand, within AO353_26555at 5813.305 kb on - strand, within AO353_26555at 5813.305 kb on - strand, within AO353_26555at 5813.305 kb on - strand, within AO353_26555at 5813.318 kb on + strand, within AO353_26555at 5813.318 kb on + strand, within AO353_26555at 5813.318 kb on + strand, within AO353_26555at 5813.318 kb on + strand, within AO353_26555at 5813.318 kb on + strand, within AO353_26555at 5813.318 kb on + strand, within AO353_26555at 5813.318 kb on + strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.319 kb on - strand, within AO353_26555at 5813.346 kb on + strand, within AO353_26555at 5813.346 kb on + strand, within AO353_26555at 5813.346 kb on + strand, within AO353_26555at 5813.346 kb on + strand, within AO353_26555at 5813.346 kb on + strand, within AO353_26555at 5813.347 kb on - strand, within AO353_26555at 5813.347 kb on - strand, within AO353_26555at 5813.347 kb on - strand, within AO353_26555at 5813.347 kb on - strand, within AO353_26555at 5813.350 kb on + strand, within AO353_26555at 5813.350 kb on + strand, within AO353_26555at 5813.351 kb on - strand, within AO353_26555at 5813.351 kb on - strand, within AO353_26555at 5813.351 kb on - strand, within AO353_26555at 5813.357 kb on + strand, within AO353_26555at 5813.357 kb on + strand, within AO353_26555at 5813.358 kb on - strand, within AO353_26555at 5813.442 kb on + strand, within AO353_26555at 5813.442 kb on + strand, within AO353_26555at 5813.443 kb on - strand, within AO353_26555at 5813.443 kb on - strand, within AO353_26555at 5813.511 kb on + strand, within AO353_26555at 5813.512 kb on - strandat 5813.578 kb on + strand, within AO353_26555at 5813.578 kb on + strand, within AO353_26555at 5813.827 kb on + strand, within AO353_26555at 5813.828 kb on - strand, within AO353_26555at 5813.896 kb on + strand, within AO353_26555at 5813.896 kb on + strand, within AO353_26555at 5813.896 kb on + strand, within AO353_26555at 5813.896 kb on + strand, within AO353_26555at 5813.896 kb on + strand, within AO353_26555at 5813.896 kb on + strand, within AO353_26555at 5813.897 kb on - strand, within AO353_26555at 5813.897 kb on - strand, within AO353_26555at 5813.897 kb on - strand, within AO353_26555at 5813.903 kb on - strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.950 kb on + strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5813.951 kb on - strand, within AO353_26555at 5814.042 kb on - strandat 5814.062 kb on - strandat 5814.062 kb on - strandat 5814.079 kb on + strandat 5814.080 kb on - strandat 5814.080 kb on - strandat 5814.098 kb on - strandat 5814.098 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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5,811,763 + AO353_26540 0.62 +0.7
5,811,763 + AO353_26540 0.62 -1.0
5,811,764 - AO353_26540 0.62 -0.0
5,811,764 - AO353_26540 0.62 -1.0
5,811,803 - AO353_26540 0.66 +0.9
5,811,918 - AO353_26540 0.81 -0.9
5,812,066 - +0.0
5,812,103 + -1.1
5,812,115 + +0.7
5,812,115 + -0.5
5,812,115 + -0.6
5,812,116 - -1.1
5,812,116 - -0.0
5,812,116 - -0.5
5,812,117 + +0.7
5,812,117 + -0.1
5,812,117 + -1.3
5,812,117 + -1.2
5,812,118 - +0.3
5,812,140 + +0.3
5,812,140 + -0.3
5,812,196 - +0.6
5,812,196 - +0.0
5,812,238 + +1.7
5,812,238 + -0.2
5,812,238 + -0.3
5,812,238 + +0.1
5,812,238 + -0.1
5,812,238 + -0.7
5,812,238 + -1.7
5,812,238 + +0.3
5,812,239 - -0.6
5,812,239 - -0.1
5,812,239 - +0.9
5,812,239 - +0.0
5,812,239 - -0.2
5,812,239 - -0.3
5,812,249 + +0.5
5,812,250 - -0.8
5,812,250 - +0.3
5,812,262 + -0.1
5,812,262 + -0.1
5,812,262 + -0.9
5,812,262 + -0.1
5,812,262 + +0.9
5,812,263 - +0.5
5,812,263 - -1.5
5,812,263 - +0.8
5,812,625 - AO353_26545 0.76 -0.8
5,812,691 + -0.5
5,812,692 - +0.3
5,812,785 + AO353_26550 0.13 -1.1
5,812,786 - AO353_26550 0.13 +0.6
5,813,029 + AO353_26550 0.71 -0.3
5,813,030 - AO353_26550 0.72 -1.2
5,813,212 + +1.3
5,813,213 - -0.5
5,813,241 + -0.3
5,813,301 + +0.7
5,813,302 - -0.7
5,813,302 - -0.1
5,813,302 - -0.3
5,813,304 + AO353_26555 0.10 +1.0
5,813,305 - AO353_26555 0.10 -0.8
5,813,305 - AO353_26555 0.10 -0.4
5,813,305 - AO353_26555 0.10 -2.3
5,813,318 + AO353_26555 0.12 +0.3
5,813,318 + AO353_26555 0.12 +0.5
5,813,318 + AO353_26555 0.12 +1.0
5,813,318 + AO353_26555 0.12 +0.6
5,813,318 + AO353_26555 0.12 +0.5
5,813,318 + AO353_26555 0.12 +0.4
5,813,318 + AO353_26555 0.12 -0.3
5,813,319 - AO353_26555 0.12 -0.4
5,813,319 - AO353_26555 0.12 -0.5
5,813,319 - AO353_26555 0.12 +0.4
5,813,319 - AO353_26555 0.12 +0.3
5,813,319 - AO353_26555 0.12 +0.1
5,813,319 - AO353_26555 0.12 -0.0
5,813,319 - AO353_26555 0.12 -0.4
5,813,319 - AO353_26555 0.12 -0.7
5,813,319 - AO353_26555 0.12 -1.1
5,813,319 - AO353_26555 0.12 -0.6
5,813,346 + AO353_26555 0.15 +0.4
5,813,346 + AO353_26555 0.15 -0.2
5,813,346 + AO353_26555 0.15 -0.8
5,813,346 + AO353_26555 0.15 +0.1
5,813,346 + AO353_26555 0.15 +0.6
5,813,347 - AO353_26555 0.15 -1.8
5,813,347 - AO353_26555 0.15 +1.1
5,813,347 - AO353_26555 0.15 -1.2
5,813,347 - AO353_26555 0.15 +0.4
5,813,350 + AO353_26555 0.15 +0.4
5,813,350 + AO353_26555 0.15 +0.4
5,813,351 - AO353_26555 0.15 -0.9
5,813,351 - AO353_26555 0.15 +0.6
5,813,351 - AO353_26555 0.15 +0.5
5,813,357 + AO353_26555 0.16 +0.3
5,813,357 + AO353_26555 0.16 +0.3
5,813,358 - AO353_26555 0.16 +1.0
5,813,442 + AO353_26555 0.25 +0.5
5,813,442 + AO353_26555 0.25 -0.0
5,813,443 - AO353_26555 0.25 -1.1
5,813,443 - AO353_26555 0.25 +0.3
5,813,511 + AO353_26555 0.33 +0.7
5,813,512 - +1.0
5,813,578 + AO353_26555 0.40 -0.9
5,813,578 + AO353_26555 0.40 -0.4
5,813,827 + AO353_26555 0.67 -0.3
5,813,828 - AO353_26555 0.67 -0.6
5,813,896 + AO353_26555 0.75 -0.2
5,813,896 + AO353_26555 0.75 -0.6
5,813,896 + AO353_26555 0.75 +0.5
5,813,896 + AO353_26555 0.75 -0.5
5,813,896 + AO353_26555 0.75 -0.5
5,813,896 + AO353_26555 0.75 -0.6
5,813,897 - AO353_26555 0.75 +0.9
5,813,897 - AO353_26555 0.75 +0.3
5,813,897 - AO353_26555 0.75 +0.4
5,813,903 - AO353_26555 0.76 +0.6
5,813,950 + AO353_26555 0.81 -0.2
5,813,950 + AO353_26555 0.81 +0.5
5,813,950 + AO353_26555 0.81 +0.3
5,813,950 + AO353_26555 0.81 -0.8
5,813,950 + AO353_26555 0.81 +1.7
5,813,950 + AO353_26555 0.81 -0.7
5,813,950 + AO353_26555 0.81 -0.6
5,813,950 + AO353_26555 0.81 +0.8
5,813,950 + AO353_26555 0.81 -1.0
5,813,950 + AO353_26555 0.81 -0.6
5,813,951 - AO353_26555 0.81 -2.0
5,813,951 - AO353_26555 0.81 -1.0
5,813,951 - AO353_26555 0.81 +0.4
5,813,951 - AO353_26555 0.81 -0.7
5,813,951 - AO353_26555 0.81 +1.0
5,813,951 - AO353_26555 0.81 -0.9
5,813,951 - AO353_26555 0.81 -1.2
5,813,951 - AO353_26555 0.81 +0.5
5,813,951 - AO353_26555 0.81 +1.3
5,813,951 - AO353_26555 0.81 +0.5
5,813,951 - AO353_26555 0.81 +0.1
5,813,951 - AO353_26555 0.81 -0.7
5,813,951 - AO353_26555 0.81 -0.0
5,813,951 - AO353_26555 0.81 +1.0
5,814,042 - +0.3
5,814,062 - -0.5
5,814,062 - -0.1
5,814,079 + -0.5
5,814,080 - -0.0
5,814,080 - +0.4
5,814,098 - +1.1
5,814,098 - -1.0

Or see this region's nucleotide sequence