Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19180

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19175 and AO353_19180 overlap by 4 nucleotidesAO353_19180 and AO353_19185 are separated by 55 nucleotides AO353_19175: AO353_19175 - AAA family ATPase, at 4,205,879 to 4,206,769 _19175 AO353_19180: AO353_19180 - GAF domain-containing protein, at 4,206,766 to 4,207,248 _19180 AO353_19185: AO353_19185 - histidine kinase, at 4,207,304 to 4,210,933 _19185 Position (kb) 4206 4207 4208Strain fitness (log2 ratio) -2 -1 0 1 2at 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.770 kb on - strandat 4205.819 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.853 kb on - strandat 4205.932 kb on + strandat 4205.933 kb on - strandat 4205.933 kb on - strandat 4206.172 kb on + strand, within AO353_19175at 4206.173 kb on - strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.405 kb on + strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.406 kb on - strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.413 kb on + strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.414 kb on - strand, within AO353_19175at 4206.561 kb on - strand, within AO353_19175at 4206.561 kb on - strand, within AO353_19175at 4206.568 kb on + strand, within AO353_19175at 4206.568 kb on + strand, within AO353_19175at 4206.569 kb on - strand, within AO353_19175at 4206.717 kb on - strandat 4206.858 kb on + strand, within AO353_19180at 4206.928 kb on + strand, within AO353_19180at 4206.928 kb on + strand, within AO353_19180at 4207.077 kb on + strand, within AO353_19180at 4207.077 kb on + strand, within AO353_19180at 4207.077 kb on + strand, within AO353_19180at 4207.078 kb on - strand, within AO353_19180at 4207.078 kb on - strand, within AO353_19180at 4207.078 kb on - strand, within AO353_19180at 4207.305 kb on + strandat 4207.305 kb on + strandat 4207.306 kb on - strandat 4207.337 kb on + strandat 4207.337 kb on + strandat 4207.338 kb on - strandat 4207.338 kb on - strandat 4207.338 kb on - strandat 4207.370 kb on + strandat 4207.370 kb on + strandat 4207.370 kb on + strandat 4207.370 kb on + strandat 4207.370 kb on + strandat 4207.370 kb on + strandat 4207.370 kb on + strandat 4207.370 kb on + strandat 4207.371 kb on - strandat 4207.371 kb on - strandat 4207.371 kb on - strandat 4207.371 kb on - strandat 4207.371 kb on - strandat 4207.421 kb on + strandat 4207.421 kb on + strandat 4207.421 kb on + strandat 4207.421 kb on + strandat 4207.422 kb on - strandat 4207.422 kb on - strandat 4207.422 kb on - strandat 4207.422 kb on - strandat 4207.422 kb on - strandat 4207.422 kb on - strandat 4207.471 kb on + strandat 4207.472 kb on - strandat 4207.625 kb on + strandat 4207.625 kb on + strandat 4207.873 kb on + strand, within AO353_19185at 4207.873 kb on + strand, within AO353_19185at 4207.874 kb on - strand, within AO353_19185at 4207.874 kb on - strand, within AO353_19185at 4208.117 kb on + strand, within AO353_19185at 4208.177 kb on + strand, within AO353_19185at 4208.177 kb on + strand, within AO353_19185at 4208.178 kb on - strand, within AO353_19185

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,205,770 - +0.1
4,205,770 - +0.7
4,205,770 - +0.2
4,205,770 - -0.2
4,205,770 - -0.8
4,205,770 - +0.4
4,205,770 - -0.2
4,205,819 - +1.0
4,205,853 - -0.3
4,205,853 - -0.2
4,205,853 - +0.3
4,205,853 - +0.0
4,205,853 - +1.2
4,205,853 - -0.3
4,205,932 + +1.0
4,205,933 - -0.3
4,205,933 - +0.2
4,206,172 + AO353_19175 0.33 +2.1
4,206,173 - AO353_19175 0.33 +0.6
4,206,405 + AO353_19175 0.59 +0.8
4,206,405 + AO353_19175 0.59 -1.3
4,206,405 + AO353_19175 0.59 -0.8
4,206,405 + AO353_19175 0.59 +0.7
4,206,405 + AO353_19175 0.59 -0.0
4,206,405 + AO353_19175 0.59 -0.0
4,206,405 + AO353_19175 0.59 -0.6
4,206,405 + AO353_19175 0.59 +0.0
4,206,405 + AO353_19175 0.59 +0.7
4,206,405 + AO353_19175 0.59 +0.8
4,206,405 + AO353_19175 0.59 -1.6
4,206,405 + AO353_19175 0.59 -0.3
4,206,405 + AO353_19175 0.59 -0.9
4,206,406 - AO353_19175 0.59 +1.7
4,206,406 - AO353_19175 0.59 +0.2
4,206,406 - AO353_19175 0.59 -0.2
4,206,406 - AO353_19175 0.59 +0.2
4,206,406 - AO353_19175 0.59 -0.8
4,206,406 - AO353_19175 0.59 -0.3
4,206,406 - AO353_19175 0.59 -1.6
4,206,406 - AO353_19175 0.59 -0.4
4,206,406 - AO353_19175 0.59 -0.7
4,206,406 - AO353_19175 0.59 +0.4
4,206,406 - AO353_19175 0.59 +0.3
4,206,406 - AO353_19175 0.59 -0.4
4,206,406 - AO353_19175 0.59 -1.2
4,206,406 - AO353_19175 0.59 +1.4
4,206,413 + AO353_19175 0.60 -1.6
4,206,413 + AO353_19175 0.60 -0.9
4,206,413 + AO353_19175 0.60 -0.4
4,206,413 + AO353_19175 0.60 +0.8
4,206,413 + AO353_19175 0.60 +0.6
4,206,413 + AO353_19175 0.60 -0.5
4,206,413 + AO353_19175 0.60 +0.0
4,206,413 + AO353_19175 0.60 -1.2
4,206,413 + AO353_19175 0.60 -0.6
4,206,414 - AO353_19175 0.60 -0.8
4,206,414 - AO353_19175 0.60 -0.2
4,206,414 - AO353_19175 0.60 -0.6
4,206,414 - AO353_19175 0.60 -0.4
4,206,414 - AO353_19175 0.60 +1.0
4,206,414 - AO353_19175 0.60 +0.6
4,206,414 - AO353_19175 0.60 -0.5
4,206,414 - AO353_19175 0.60 -1.4
4,206,561 - AO353_19175 0.77 -1.6
4,206,561 - AO353_19175 0.77 +0.2
4,206,568 + AO353_19175 0.77 -0.5
4,206,568 + AO353_19175 0.77 +0.5
4,206,569 - AO353_19175 0.77 +0.4
4,206,717 - -2.1
4,206,858 + AO353_19180 0.19 +1.0
4,206,928 + AO353_19180 0.34 -0.4
4,206,928 + AO353_19180 0.34 -0.2
4,207,077 + AO353_19180 0.64 +0.2
4,207,077 + AO353_19180 0.64 +0.3
4,207,077 + AO353_19180 0.64 +0.1
4,207,078 - AO353_19180 0.65 -1.7
4,207,078 - AO353_19180 0.65 +1.4
4,207,078 - AO353_19180 0.65 +0.4
4,207,305 + -0.0
4,207,305 + +0.5
4,207,306 - +0.5
4,207,337 + -0.7
4,207,337 + -1.4
4,207,338 - -0.7
4,207,338 - +0.0
4,207,338 - -0.4
4,207,370 + -1.0
4,207,370 + +0.3
4,207,370 + +1.7
4,207,370 + -0.8
4,207,370 + +0.8
4,207,370 + +0.4
4,207,370 + +0.2
4,207,370 + -1.5
4,207,371 - -0.0
4,207,371 - -2.4
4,207,371 - +0.2
4,207,371 - -0.9
4,207,371 - -1.9
4,207,421 + -0.0
4,207,421 + +0.8
4,207,421 + +0.2
4,207,421 + -0.2
4,207,422 - +0.8
4,207,422 - -0.7
4,207,422 - -0.2
4,207,422 - -0.6
4,207,422 - +0.2
4,207,422 - -1.4
4,207,471 + -2.4
4,207,472 - +0.3
4,207,625 + -0.7
4,207,625 + -0.2
4,207,873 + AO353_19185 0.16 -0.4
4,207,873 + AO353_19185 0.16 +0.3
4,207,874 - AO353_19185 0.16 -1.2
4,207,874 - AO353_19185 0.16 +0.8
4,208,117 + AO353_19185 0.22 -0.6
4,208,177 + AO353_19185 0.24 +0.3
4,208,177 + AO353_19185 0.24 +0.6
4,208,178 - AO353_19185 0.24 -0.1

Or see this region's nucleotide sequence