Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19175 and AO353_19180 overlap by 4 nucleotides AO353_19180 and AO353_19185 are separated by 55 nucleotides
AO353_19175: AO353_19175 - AAA family ATPase, at 4,205,879 to 4,206,769
_19175
AO353_19180: AO353_19180 - GAF domain-containing protein, at 4,206,766 to 4,207,248
_19180
AO353_19185: AO353_19185 - histidine kinase, at 4,207,304 to 4,210,933
_19185
Position (kb)
4206
4207
4208 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4205.770 kb on - strand at 4205.770 kb on - strand at 4205.770 kb on - strand at 4205.770 kb on - strand at 4205.770 kb on - strand at 4205.770 kb on - strand at 4205.770 kb on - strand at 4205.819 kb on - strand at 4205.853 kb on - strand at 4205.853 kb on - strand at 4205.853 kb on - strand at 4205.853 kb on - strand at 4205.853 kb on - strand at 4205.853 kb on - strand at 4205.932 kb on + strand at 4205.933 kb on - strand at 4205.933 kb on - strand at 4206.172 kb on + strand, within AO353_19175 at 4206.173 kb on - strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.405 kb on + strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.406 kb on - strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.413 kb on + strand, within AO353_19175 at 4206.414 kb on - strand, within AO353_19175 at 4206.414 kb on - strand, within AO353_19175 at 4206.414 kb on - strand, within AO353_19175 at 4206.414 kb on - strand, within AO353_19175 at 4206.414 kb on - strand, within AO353_19175 at 4206.414 kb on - strand, within AO353_19175 at 4206.414 kb on - strand, within AO353_19175 at 4206.414 kb on - strand, within AO353_19175 at 4206.561 kb on - strand, within AO353_19175 at 4206.561 kb on - strand, within AO353_19175 at 4206.568 kb on + strand, within AO353_19175 at 4206.568 kb on + strand, within AO353_19175 at 4206.569 kb on - strand, within AO353_19175 at 4206.717 kb on - strand at 4206.858 kb on + strand, within AO353_19180 at 4206.928 kb on + strand, within AO353_19180 at 4206.928 kb on + strand, within AO353_19180 at 4207.077 kb on + strand, within AO353_19180 at 4207.077 kb on + strand, within AO353_19180 at 4207.077 kb on + strand, within AO353_19180 at 4207.078 kb on - strand, within AO353_19180 at 4207.078 kb on - strand, within AO353_19180 at 4207.078 kb on - strand, within AO353_19180 at 4207.305 kb on + strand at 4207.305 kb on + strand at 4207.306 kb on - strand at 4207.337 kb on + strand at 4207.337 kb on + strand at 4207.338 kb on - strand at 4207.338 kb on - strand at 4207.338 kb on - strand at 4207.370 kb on + strand at 4207.370 kb on + strand at 4207.370 kb on + strand at 4207.370 kb on + strand at 4207.370 kb on + strand at 4207.370 kb on + strand at 4207.370 kb on + strand at 4207.370 kb on + strand at 4207.371 kb on - strand at 4207.371 kb on - strand at 4207.371 kb on - strand at 4207.371 kb on - strand at 4207.371 kb on - strand at 4207.421 kb on + strand at 4207.421 kb on + strand at 4207.421 kb on + strand at 4207.421 kb on + strand at 4207.422 kb on - strand at 4207.422 kb on - strand at 4207.422 kb on - strand at 4207.422 kb on - strand at 4207.422 kb on - strand at 4207.422 kb on - strand at 4207.471 kb on + strand at 4207.472 kb on - strand at 4207.625 kb on + strand at 4207.625 kb on + strand at 4207.873 kb on + strand, within AO353_19185 at 4207.873 kb on + strand, within AO353_19185 at 4207.874 kb on - strand, within AO353_19185 at 4207.874 kb on - strand, within AO353_19185 at 4208.117 kb on + strand, within AO353_19185 at 4208.177 kb on + strand, within AO353_19185 at 4208.177 kb on + strand, within AO353_19185 at 4208.178 kb on - strand, within AO353_19185
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,205,770 - +0.1 4,205,770 - +0.7 4,205,770 - +0.2 4,205,770 - -0.2 4,205,770 - -0.8 4,205,770 - +0.4 4,205,770 - -0.2 4,205,819 - +1.0 4,205,853 - -0.3 4,205,853 - -0.2 4,205,853 - +0.3 4,205,853 - +0.0 4,205,853 - +1.2 4,205,853 - -0.3 4,205,932 + +1.0 4,205,933 - -0.3 4,205,933 - +0.2 4,206,172 + AO353_19175 0.33 +2.1 4,206,173 - AO353_19175 0.33 +0.6 4,206,405 + AO353_19175 0.59 +0.8 4,206,405 + AO353_19175 0.59 -1.3 4,206,405 + AO353_19175 0.59 -0.8 4,206,405 + AO353_19175 0.59 +0.7 4,206,405 + AO353_19175 0.59 -0.0 4,206,405 + AO353_19175 0.59 -0.0 4,206,405 + AO353_19175 0.59 -0.6 4,206,405 + AO353_19175 0.59 +0.0 4,206,405 + AO353_19175 0.59 +0.7 4,206,405 + AO353_19175 0.59 +0.8 4,206,405 + AO353_19175 0.59 -1.6 4,206,405 + AO353_19175 0.59 -0.3 4,206,405 + AO353_19175 0.59 -0.9 4,206,406 - AO353_19175 0.59 +1.7 4,206,406 - AO353_19175 0.59 +0.2 4,206,406 - AO353_19175 0.59 -0.2 4,206,406 - AO353_19175 0.59 +0.2 4,206,406 - AO353_19175 0.59 -0.8 4,206,406 - AO353_19175 0.59 -0.3 4,206,406 - AO353_19175 0.59 -1.6 4,206,406 - AO353_19175 0.59 -0.4 4,206,406 - AO353_19175 0.59 -0.7 4,206,406 - AO353_19175 0.59 +0.4 4,206,406 - AO353_19175 0.59 +0.3 4,206,406 - AO353_19175 0.59 -0.4 4,206,406 - AO353_19175 0.59 -1.2 4,206,406 - AO353_19175 0.59 +1.4 4,206,413 + AO353_19175 0.60 -1.6 4,206,413 + AO353_19175 0.60 -0.9 4,206,413 + AO353_19175 0.60 -0.4 4,206,413 + AO353_19175 0.60 +0.8 4,206,413 + AO353_19175 0.60 +0.6 4,206,413 + AO353_19175 0.60 -0.5 4,206,413 + AO353_19175 0.60 +0.0 4,206,413 + AO353_19175 0.60 -1.2 4,206,413 + AO353_19175 0.60 -0.6 4,206,414 - AO353_19175 0.60 -0.8 4,206,414 - AO353_19175 0.60 -0.2 4,206,414 - AO353_19175 0.60 -0.6 4,206,414 - AO353_19175 0.60 -0.4 4,206,414 - AO353_19175 0.60 +1.0 4,206,414 - AO353_19175 0.60 +0.6 4,206,414 - AO353_19175 0.60 -0.5 4,206,414 - AO353_19175 0.60 -1.4 4,206,561 - AO353_19175 0.77 -1.6 4,206,561 - AO353_19175 0.77 +0.2 4,206,568 + AO353_19175 0.77 -0.5 4,206,568 + AO353_19175 0.77 +0.5 4,206,569 - AO353_19175 0.77 +0.4 4,206,717 - -2.1 4,206,858 + AO353_19180 0.19 +1.0 4,206,928 + AO353_19180 0.34 -0.4 4,206,928 + AO353_19180 0.34 -0.2 4,207,077 + AO353_19180 0.64 +0.2 4,207,077 + AO353_19180 0.64 +0.3 4,207,077 + AO353_19180 0.64 +0.1 4,207,078 - AO353_19180 0.65 -1.7 4,207,078 - AO353_19180 0.65 +1.4 4,207,078 - AO353_19180 0.65 +0.4 4,207,305 + -0.0 4,207,305 + +0.5 4,207,306 - +0.5 4,207,337 + -0.7 4,207,337 + -1.4 4,207,338 - -0.7 4,207,338 - +0.0 4,207,338 - -0.4 4,207,370 + -1.0 4,207,370 + +0.3 4,207,370 + +1.7 4,207,370 + -0.8 4,207,370 + +0.8 4,207,370 + +0.4 4,207,370 + +0.2 4,207,370 + -1.5 4,207,371 - -0.0 4,207,371 - -2.4 4,207,371 - +0.2 4,207,371 - -0.9 4,207,371 - -1.9 4,207,421 + -0.0 4,207,421 + +0.8 4,207,421 + +0.2 4,207,421 + -0.2 4,207,422 - +0.8 4,207,422 - -0.7 4,207,422 - -0.2 4,207,422 - -0.6 4,207,422 - +0.2 4,207,422 - -1.4 4,207,471 + -2.4 4,207,472 - +0.3 4,207,625 + -0.7 4,207,625 + -0.2 4,207,873 + AO353_19185 0.16 -0.4 4,207,873 + AO353_19185 0.16 +0.3 4,207,874 - AO353_19185 0.16 -1.2 4,207,874 - AO353_19185 0.16 +0.8 4,208,117 + AO353_19185 0.22 -0.6 4,208,177 + AO353_19185 0.24 +0.3 4,208,177 + AO353_19185 0.24 +0.6 4,208,178 - AO353_19185 0.24 -0.1
Or see this region's nucleotide sequence