Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05280

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05275 and AO353_05280 overlap by 4 nucleotidesAO353_05280 and AO353_05285 are separated by 190 nucleotides AO353_05275: AO353_05275 - conjugal transfer protein TraR, at 1,160,593 to 1,161,663 _05275 AO353_05280: AO353_05280 - 4-carboxymuconolactone decarboxylase, at 1,161,660 to 1,162,052 _05280 AO353_05285: AO353_05285 - malate transporter, at 1,162,243 to 1,163,184 _05285 Position (kb) 1161 1162 1163Strain fitness (log2 ratio) -2 -1 0 1 2at 1160.978 kb on + strand, within AO353_05275at 1160.979 kb on - strand, within AO353_05275at 1160.995 kb on + strand, within AO353_05275at 1160.995 kb on + strand, within AO353_05275at 1160.995 kb on + strand, within AO353_05275at 1160.995 kb on + strand, within AO353_05275at 1160.995 kb on + strand, within AO353_05275at 1160.995 kb on + strand, within AO353_05275at 1160.996 kb on - strand, within AO353_05275at 1160.996 kb on - strand, within AO353_05275at 1160.996 kb on - strand, within AO353_05275at 1160.996 kb on - strand, within AO353_05275at 1161.445 kb on + strand, within AO353_05275at 1161.446 kb on - strand, within AO353_05275at 1161.446 kb on - strand, within AO353_05275at 1161.446 kb on - strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.496 kb on + strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.497 kb on - strand, within AO353_05275at 1161.505 kb on + strand, within AO353_05275at 1161.605 kb on + strandat 1161.605 kb on + strandat 1161.612 kb on + strandat 1161.612 kb on + strandat 1161.612 kb on + strandat 1161.613 kb on - strandat 1161.613 kb on - strandat 1161.613 kb on - strandat 1161.613 kb on - strandat 1161.613 kb on - strandat 1161.703 kb on + strand, within AO353_05280at 1161.704 kb on - strand, within AO353_05280at 1161.704 kb on - strand, within AO353_05280at 1161.975 kb on + strand, within AO353_05280at 1161.975 kb on + strand, within AO353_05280at 1161.975 kb on + strand, within AO353_05280at 1162.035 kb on + strandat 1162.036 kb on - strandat 1162.050 kb on + strandat 1162.050 kb on + strandat 1162.105 kb on - strandat 1162.244 kb on + strandat 1162.244 kb on + strandat 1162.245 kb on - strandat 1162.400 kb on + strand, within AO353_05285at 1162.400 kb on + strand, within AO353_05285at 1162.400 kb on + strand, within AO353_05285at 1162.400 kb on + strand, within AO353_05285at 1162.400 kb on + strand, within AO353_05285at 1162.401 kb on - strand, within AO353_05285at 1162.401 kb on - strand, within AO353_05285at 1162.401 kb on - strand, within AO353_05285at 1162.401 kb on - strand, within AO353_05285at 1162.401 kb on - strand, within AO353_05285at 1162.592 kb on + strand, within AO353_05285at 1162.592 kb on + strand, within AO353_05285at 1162.593 kb on + strand, within AO353_05285at 1162.593 kb on - strand, within AO353_05285at 1162.593 kb on - strand, within AO353_05285at 1162.593 kb on - strand, within AO353_05285at 1162.593 kb on - strand, within AO353_05285at 1162.593 kb on - strand, within AO353_05285at 1162.593 kb on - strand, within AO353_05285at 1162.621 kb on + strand, within AO353_05285at 1162.638 kb on - strand, within AO353_05285at 1162.638 kb on - strand, within AO353_05285at 1162.638 kb on - strand, within AO353_05285at 1162.733 kb on + strand, within AO353_05285at 1162.733 kb on + strand, within AO353_05285at 1162.734 kb on - strand, within AO353_05285at 1162.734 kb on - strand, within AO353_05285at 1162.734 kb on - strand, within AO353_05285at 1162.734 kb on - strand, within AO353_05285at 1162.766 kb on + strand, within AO353_05285at 1162.766 kb on + strand, within AO353_05285at 1162.767 kb on - strand, within AO353_05285at 1162.823 kb on + strand, within AO353_05285at 1162.823 kb on + strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.824 kb on - strand, within AO353_05285at 1162.886 kb on + strand, within AO353_05285at 1162.886 kb on + strand, within AO353_05285at 1162.886 kb on + strand, within AO353_05285at 1162.886 kb on + strand, within AO353_05285at 1162.886 kb on + strand, within AO353_05285at 1162.886 kb on + strand, within AO353_05285at 1162.886 kb on + strand, within AO353_05285at 1162.887 kb on - strand, within AO353_05285at 1162.887 kb on - strand, within AO353_05285at 1162.887 kb on - strand, within AO353_05285at 1162.887 kb on - strand, within AO353_05285at 1162.887 kb on - strand, within AO353_05285at 1162.887 kb on - strand, within AO353_05285at 1162.970 kb on + strand, within AO353_05285at 1162.970 kb on + strand, within AO353_05285at 1162.970 kb on + strand, within AO353_05285at 1162.970 kb on + strand, within AO353_05285at 1162.970 kb on + strand, within AO353_05285at 1162.970 kb on + strand, within AO353_05285at 1162.971 kb on - strandat 1162.971 kb on - strand, within AO353_05285at 1162.971 kb on - strand, within AO353_05285at 1162.971 kb on - strand, within AO353_05285at 1162.971 kb on - strand, within AO353_05285

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,160,978 + AO353_05275 0.36 +0.7
1,160,979 - AO353_05275 0.36 +0.2
1,160,995 + AO353_05275 0.38 +0.7
1,160,995 + AO353_05275 0.38 -0.4
1,160,995 + AO353_05275 0.38 +0.4
1,160,995 + AO353_05275 0.38 +0.3
1,160,995 + AO353_05275 0.38 +0.9
1,160,995 + AO353_05275 0.38 -0.3
1,160,996 - AO353_05275 0.38 +0.2
1,160,996 - AO353_05275 0.38 +0.6
1,160,996 - AO353_05275 0.38 -0.5
1,160,996 - AO353_05275 0.38 -1.0
1,161,445 + AO353_05275 0.80 -0.0
1,161,446 - AO353_05275 0.80 -0.4
1,161,446 - AO353_05275 0.80 +1.3
1,161,446 - AO353_05275 0.80 +0.2
1,161,496 + AO353_05275 0.84 -0.5
1,161,496 + AO353_05275 0.84 +0.2
1,161,496 + AO353_05275 0.84 +0.5
1,161,496 + AO353_05275 0.84 -0.6
1,161,496 + AO353_05275 0.84 +0.3
1,161,496 + AO353_05275 0.84 -0.1
1,161,496 + AO353_05275 0.84 +0.4
1,161,496 + AO353_05275 0.84 -0.2
1,161,496 + AO353_05275 0.84 +0.4
1,161,496 + AO353_05275 0.84 -0.1
1,161,496 + AO353_05275 0.84 +0.6
1,161,496 + AO353_05275 0.84 -0.2
1,161,497 - AO353_05275 0.84 -0.3
1,161,497 - AO353_05275 0.84 +0.4
1,161,497 - AO353_05275 0.84 -1.3
1,161,497 - AO353_05275 0.84 +0.4
1,161,497 - AO353_05275 0.84 +0.3
1,161,497 - AO353_05275 0.84 -0.2
1,161,497 - AO353_05275 0.84 -0.3
1,161,497 - AO353_05275 0.84 -0.8
1,161,497 - AO353_05275 0.84 +0.1
1,161,497 - AO353_05275 0.84 +0.3
1,161,505 + AO353_05275 0.85 +0.9
1,161,605 + -0.8
1,161,605 + -1.6
1,161,612 + +0.9
1,161,612 + -0.0
1,161,612 + -0.5
1,161,613 - -0.7
1,161,613 - -0.1
1,161,613 - -1.2
1,161,613 - -0.1
1,161,613 - -0.4
1,161,703 + AO353_05280 0.11 +0.1
1,161,704 - AO353_05280 0.11 -1.0
1,161,704 - AO353_05280 0.11 -0.4
1,161,975 + AO353_05280 0.80 -1.4
1,161,975 + AO353_05280 0.80 -0.4
1,161,975 + AO353_05280 0.80 -0.8
1,162,035 + +1.7
1,162,036 - -0.7
1,162,050 + -2.4
1,162,050 + +0.1
1,162,105 - -0.7
1,162,244 + +0.4
1,162,244 + +0.0
1,162,245 - -0.4
1,162,400 + AO353_05285 0.17 +0.4
1,162,400 + AO353_05285 0.17 -0.7
1,162,400 + AO353_05285 0.17 -1.3
1,162,400 + AO353_05285 0.17 -1.8
1,162,400 + AO353_05285 0.17 +0.2
1,162,401 - AO353_05285 0.17 +1.2
1,162,401 - AO353_05285 0.17 -0.5
1,162,401 - AO353_05285 0.17 -0.0
1,162,401 - AO353_05285 0.17 -0.4
1,162,401 - AO353_05285 0.17 +0.1
1,162,592 + AO353_05285 0.37 +1.3
1,162,592 + AO353_05285 0.37 -2.1
1,162,593 + AO353_05285 0.37 +1.3
1,162,593 - AO353_05285 0.37 +0.2
1,162,593 - AO353_05285 0.37 +0.2
1,162,593 - AO353_05285 0.37 -0.0
1,162,593 - AO353_05285 0.37 +1.6
1,162,593 - AO353_05285 0.37 -0.4
1,162,593 - AO353_05285 0.37 -0.8
1,162,621 + AO353_05285 0.40 -0.8
1,162,638 - AO353_05285 0.42 +1.4
1,162,638 - AO353_05285 0.42 -0.7
1,162,638 - AO353_05285 0.42 +1.3
1,162,733 + AO353_05285 0.52 -0.3
1,162,733 + AO353_05285 0.52 -0.4
1,162,734 - AO353_05285 0.52 -0.4
1,162,734 - AO353_05285 0.52 -0.8
1,162,734 - AO353_05285 0.52 -0.2
1,162,734 - AO353_05285 0.52 +1.8
1,162,766 + AO353_05285 0.56 -1.0
1,162,766 + AO353_05285 0.56 +0.1
1,162,767 - AO353_05285 0.56 +0.1
1,162,823 + AO353_05285 0.62 -0.3
1,162,823 + AO353_05285 0.62 -0.1
1,162,824 - AO353_05285 0.62 -0.8
1,162,824 - AO353_05285 0.62 +1.5
1,162,824 - AO353_05285 0.62 -1.0
1,162,824 - AO353_05285 0.62 +0.4
1,162,824 - AO353_05285 0.62 -0.7
1,162,824 - AO353_05285 0.62 +0.6
1,162,824 - AO353_05285 0.62 +0.7
1,162,824 - AO353_05285 0.62 -1.0
1,162,824 - AO353_05285 0.62 -0.5
1,162,824 - AO353_05285 0.62 -0.0
1,162,886 + AO353_05285 0.68 +0.4
1,162,886 + AO353_05285 0.68 -0.1
1,162,886 + AO353_05285 0.68 +0.1
1,162,886 + AO353_05285 0.68 -0.8
1,162,886 + AO353_05285 0.68 +0.2
1,162,886 + AO353_05285 0.68 +0.5
1,162,886 + AO353_05285 0.68 +0.3
1,162,887 - AO353_05285 0.68 +1.1
1,162,887 - AO353_05285 0.68 +0.3
1,162,887 - AO353_05285 0.68 +1.1
1,162,887 - AO353_05285 0.68 -1.4
1,162,887 - AO353_05285 0.68 -0.3
1,162,887 - AO353_05285 0.68 +1.0
1,162,970 + AO353_05285 0.77 -0.0
1,162,970 + AO353_05285 0.77 +0.7
1,162,970 + AO353_05285 0.77 -0.4
1,162,970 + AO353_05285 0.77 +0.9
1,162,970 + AO353_05285 0.77 -0.3
1,162,970 + AO353_05285 0.77 -0.4
1,162,971 - +1.3
1,162,971 - AO353_05285 0.77 +0.3
1,162,971 - AO353_05285 0.77 -0.2
1,162,971 - AO353_05285 0.77 +2.3
1,162,971 - AO353_05285 0.77 -0.4

Or see this region's nucleotide sequence