Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02160

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02155 and AO353_02160 are separated by 221 nucleotidesAO353_02160 and AO353_02165 are separated by 325 nucleotides AO353_02155: AO353_02155 - hypothetical protein, at 462,424 to 463,386 _02155 AO353_02160: AO353_02160 - polyphosphate kinase, at 463,608 to 465,131 _02160 AO353_02165: AO353_02165 - FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 465,457 to 467,451 _02165 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -2 -1 0 1 2at 462.683 kb on + strand, within AO353_02155at 462.684 kb on - strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.764 kb on - strand, within AO353_02155at 462.764 kb on - strand, within AO353_02155at 462.764 kb on - strand, within AO353_02155at 462.797 kb on + strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.911 kb on + strand, within AO353_02155at 462.911 kb on + strand, within AO353_02155at 462.912 kb on - strand, within AO353_02155at 462.912 kb on - strand, within AO353_02155at 462.912 kb on - strand, within AO353_02155at 463.115 kb on + strand, within AO353_02155at 463.115 kb on + strand, within AO353_02155at 463.115 kb on + strand, within AO353_02155at 463.115 kb on + strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.174 kb on - strand, within AO353_02155at 463.174 kb on - strand, within AO353_02155at 463.174 kb on - strand, within AO353_02155at 463.221 kb on - strand, within AO353_02155at 463.221 kb on - strand, within AO353_02155at 463.244 kb on - strand, within AO353_02155at 463.291 kb on + strandat 463.291 kb on + strandat 463.292 kb on - strandat 463.292 kb on - strandat 463.292 kb on - strandat 463.292 kb on - strandat 463.358 kb on + strandat 463.358 kb on + strandat 463.358 kb on + strandat 463.358 kb on + strandat 463.358 kb on + strandat 463.359 kb on - strandat 463.359 kb on - strandat 463.359 kb on - strandat 463.359 kb on - strandat 463.359 kb on - strandat 463.359 kb on - strandat 463.424 kb on + strandat 463.424 kb on + strandat 463.425 kb on - strandat 463.425 kb on - strandat 463.425 kb on - strandat 463.425 kb on - strandat 463.425 kb on - strandat 463.470 kb on + strandat 463.471 kb on - strandat 463.482 kb on + strandat 463.523 kb on + strandat 463.523 kb on + strandat 463.591 kb on + strandat 463.592 kb on - strandat 463.609 kb on + strandat 463.609 kb on + strandat 463.692 kb on + strandat 463.773 kb on - strand, within AO353_02160at 463.973 kb on - strand, within AO353_02160at 464.057 kb on + strand, within AO353_02160at 464.101 kb on + strand, within AO353_02160at 464.101 kb on + strand, within AO353_02160at 464.102 kb on - strand, within AO353_02160at 464.102 kb on - strand, within AO353_02160at 464.102 kb on - strand, within AO353_02160at 464.152 kb on + strand, within AO353_02160at 464.153 kb on - strand, within AO353_02160at 464.153 kb on - strand, within AO353_02160at 464.153 kb on - strand, within AO353_02160at 464.216 kb on + strand, within AO353_02160at 464.216 kb on + strand, within AO353_02160at 464.311 kb on + strand, within AO353_02160at 464.312 kb on - strand, within AO353_02160at 464.312 kb on - strand, within AO353_02160at 464.348 kb on + strand, within AO353_02160at 464.554 kb on + strand, within AO353_02160at 464.554 kb on + strand, within AO353_02160at 464.554 kb on + strand, within AO353_02160at 464.554 kb on + strand, within AO353_02160at 464.554 kb on + strand, within AO353_02160at 464.555 kb on - strand, within AO353_02160at 464.555 kb on - strand, within AO353_02160at 464.572 kb on + strand, within AO353_02160at 465.085 kb on + strandat 465.085 kb on + strandat 465.085 kb on + strandat 465.086 kb on - strandat 465.086 kb on - strandat 465.086 kb on - strandat 465.086 kb on - strandat 465.096 kb on - strandat 465.162 kb on + strandat 465.182 kb on + strandat 465.182 kb on + strandat 465.182 kb on + strandat 465.183 kb on - strandat 465.437 kb on + strandat 465.437 kb on + strandat 465.438 kb on - strandat 465.438 kb on - strandat 465.438 kb on - strandat 465.438 kb on - strandat 465.550 kb on + strandat 465.550 kb on + strandat 465.550 kb on + strandat 465.550 kb on + strandat 465.551 kb on - strandat 465.551 kb on - strandat 465.551 kb on - strandat 465.586 kb on + strandat 465.587 kb on - strandat 465.587 kb on - strandat 465.763 kb on + strand, within AO353_02165at 465.783 kb on + strand, within AO353_02165at 465.783 kb on + strand, within AO353_02165at 465.783 kb on + strand, within AO353_02165at 465.783 kb on + strand, within AO353_02165at 465.783 kb on + strand, within AO353_02165at 465.783 kb on + strand, within AO353_02165at 465.783 kb on + strand, within AO353_02165at 465.783 kb on + strand, within AO353_02165at 465.784 kb on - strand, within AO353_02165at 465.784 kb on - strand, within AO353_02165at 465.784 kb on - strand, within AO353_02165at 465.784 kb on - strand, within AO353_02165at 465.847 kb on + strand, within AO353_02165at 465.847 kb on + strand, within AO353_02165at 465.847 kb on + strand, within AO353_02165at 465.847 kb on + strand, within AO353_02165at 465.847 kb on + strand, within AO353_02165at 465.848 kb on - strand, within AO353_02165at 465.848 kb on - strand, within AO353_02165at 465.848 kb on - strand, within AO353_02165at 465.848 kb on - strand, within AO353_02165at 465.900 kb on - strand, within AO353_02165

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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462,683 + AO353_02155 0.27 +0.0
462,684 - AO353_02155 0.27 -0.4
462,763 + AO353_02155 0.35 -1.2
462,763 + AO353_02155 0.35 -1.0
462,763 + AO353_02155 0.35 +0.0
462,763 + AO353_02155 0.35 -0.8
462,763 + AO353_02155 0.35 +0.8
462,764 - AO353_02155 0.35 +0.0
462,764 - AO353_02155 0.35 -0.0
462,764 - AO353_02155 0.35 +0.8
462,797 + AO353_02155 0.39 +0.1
462,798 - AO353_02155 0.39 -1.1
462,798 - AO353_02155 0.39 +0.9
462,798 - AO353_02155 0.39 +0.4
462,798 - AO353_02155 0.39 +0.1
462,798 - AO353_02155 0.39 +0.0
462,860 + AO353_02155 0.45 -0.8
462,860 + AO353_02155 0.45 -0.1
462,860 + AO353_02155 0.45 +1.6
462,860 + AO353_02155 0.45 -1.0
462,860 + AO353_02155 0.45 -1.4
462,860 + AO353_02155 0.45 -1.1
462,860 + AO353_02155 0.45 -0.3
462,861 - AO353_02155 0.45 -0.5
462,861 - AO353_02155 0.45 +0.5
462,861 - AO353_02155 0.45 -0.1
462,861 - AO353_02155 0.45 -0.1
462,861 - AO353_02155 0.45 -0.2
462,861 - AO353_02155 0.45 -0.1
462,861 - AO353_02155 0.45 +0.4
462,911 + AO353_02155 0.51 -0.2
462,911 + AO353_02155 0.51 +0.6
462,912 - AO353_02155 0.51 +1.0
462,912 - AO353_02155 0.51 -0.3
462,912 - AO353_02155 0.51 +1.3
463,115 + AO353_02155 0.72 +0.9
463,115 + AO353_02155 0.72 -1.1
463,115 + AO353_02155 0.72 +0.2
463,115 + AO353_02155 0.72 -0.5
463,116 - AO353_02155 0.72 -0.6
463,116 - AO353_02155 0.72 -0.5
463,116 - AO353_02155 0.72 -0.0
463,116 - AO353_02155 0.72 +0.5
463,116 - AO353_02155 0.72 +1.5
463,116 - AO353_02155 0.72 -0.7
463,116 - AO353_02155 0.72 +0.4
463,124 + AO353_02155 0.73 -0.4
463,124 + AO353_02155 0.73 +0.0
463,124 + AO353_02155 0.73 -0.9
463,124 + AO353_02155 0.73 +0.3
463,124 + AO353_02155 0.73 -0.5
463,124 + AO353_02155 0.73 -0.1
463,124 + AO353_02155 0.73 -0.3
463,124 + AO353_02155 0.73 +0.8
463,125 - AO353_02155 0.73 -0.3
463,125 - AO353_02155 0.73 +1.3
463,125 - AO353_02155 0.73 -0.3
463,125 - AO353_02155 0.73 -1.9
463,125 - AO353_02155 0.73 -0.5
463,125 - AO353_02155 0.73 +0.0
463,125 - AO353_02155 0.73 -0.7
463,125 - AO353_02155 0.73 -0.4
463,174 - AO353_02155 0.78 -0.7
463,174 - AO353_02155 0.78 -0.4
463,174 - AO353_02155 0.78 -0.7
463,221 - AO353_02155 0.83 +0.7
463,221 - AO353_02155 0.83 +0.0
463,244 - AO353_02155 0.85 +1.2
463,291 + +0.4
463,291 + -0.6
463,292 - -0.4
463,292 - +0.5
463,292 - -0.2
463,292 - +1.3
463,358 + -0.9
463,358 + -0.2
463,358 + -0.5
463,358 + -0.6
463,358 + -0.3
463,359 - -0.8
463,359 - -1.0
463,359 - +0.6
463,359 - -0.3
463,359 - -0.3
463,359 - +0.9
463,424 + +0.3
463,424 + +0.3
463,425 - +1.2
463,425 - -0.3
463,425 - -0.5
463,425 - -0.7
463,425 - +0.8
463,470 + -0.2
463,471 - -0.1
463,482 + +2.4
463,523 + -0.5
463,523 + -0.2
463,591 + -0.1
463,592 - +0.3
463,609 + -0.2
463,609 + -0.9
463,692 + +1.0
463,773 - AO353_02160 0.11 +0.6
463,973 - AO353_02160 0.24 +0.5
464,057 + AO353_02160 0.29 +0.3
464,101 + AO353_02160 0.32 -0.5
464,101 + AO353_02160 0.32 +0.5
464,102 - AO353_02160 0.32 +1.6
464,102 - AO353_02160 0.32 +0.0
464,102 - AO353_02160 0.32 -0.2
464,152 + AO353_02160 0.36 +0.5
464,153 - AO353_02160 0.36 +0.2
464,153 - AO353_02160 0.36 +0.8
464,153 - AO353_02160 0.36 +0.2
464,216 + AO353_02160 0.40 +0.6
464,216 + AO353_02160 0.40 -0.6
464,311 + AO353_02160 0.46 +0.7
464,312 - AO353_02160 0.46 +0.9
464,312 - AO353_02160 0.46 +0.4
464,348 + AO353_02160 0.49 +0.5
464,554 + AO353_02160 0.62 -1.1
464,554 + AO353_02160 0.62 +0.9
464,554 + AO353_02160 0.62 +0.0
464,554 + AO353_02160 0.62 +1.3
464,554 + AO353_02160 0.62 +1.0
464,555 - AO353_02160 0.62 +0.3
464,555 - AO353_02160 0.62 +0.1
464,572 + AO353_02160 0.63 -0.3
465,085 + +0.3
465,085 + -0.3
465,085 + -1.0
465,086 - -0.7
465,086 - -0.0
465,086 - -0.1
465,086 - +1.3
465,096 - -1.2
465,162 + +0.5
465,182 + +0.3
465,182 + +0.2
465,182 + +0.3
465,183 - -0.6
465,437 + -1.8
465,437 + -0.5
465,438 - -1.3
465,438 - +0.6
465,438 - +2.4
465,438 - -0.9
465,550 + -1.8
465,550 + -0.6
465,550 + -0.2
465,550 + -0.2
465,551 - -0.3
465,551 - -0.1
465,551 - +0.5
465,586 + +0.6
465,587 - +1.5
465,587 - +0.4
465,763 + AO353_02165 0.15 +0.8
465,783 + AO353_02165 0.16 -0.5
465,783 + AO353_02165 0.16 +0.4
465,783 + AO353_02165 0.16 -1.0
465,783 + AO353_02165 0.16 -1.6
465,783 + AO353_02165 0.16 +0.3
465,783 + AO353_02165 0.16 +0.5
465,783 + AO353_02165 0.16 +0.0
465,783 + AO353_02165 0.16 -1.1
465,784 - AO353_02165 0.16 +1.4
465,784 - AO353_02165 0.16 +1.4
465,784 - AO353_02165 0.16 +1.0
465,784 - AO353_02165 0.16 +1.3
465,847 + AO353_02165 0.20 -0.7
465,847 + AO353_02165 0.20 -0.5
465,847 + AO353_02165 0.20 +0.8
465,847 + AO353_02165 0.20 -2.0
465,847 + AO353_02165 0.20 -0.8
465,848 - AO353_02165 0.20 +0.2
465,848 - AO353_02165 0.20 -0.7
465,848 - AO353_02165 0.20 +0.3
465,848 - AO353_02165 0.20 +1.0
465,900 - AO353_02165 0.22 +0.5

Or see this region's nucleotide sequence