Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06140

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06130 and RALBFv3_RS06135 are separated by 221 nucleotidesRALBFv3_RS06135 and RALBFv3_RS06140 are separated by 5 nucleotidesRALBFv3_RS06140 and RALBFv3_RS06145 are separated by 46 nucleotides RALBFv3_RS06130: RALBFv3_RS06130 - proline--tRNA ligase, at 1,364,375 to 1,366,099 _RS06130 RALBFv3_RS06135: RALBFv3_RS06135 - RNA pyrophosphohydrolase, at 1,366,321 to 1,367,046 _RS06135 RALBFv3_RS06140: RALBFv3_RS06140 - hypothetical protein, at 1,367,052 to 1,367,684 _RS06140 RALBFv3_RS06145: RALBFv3_RS06145 - glutamate 5-kinase, at 1,367,731 to 1,368,855 _RS06145 Position (kb) 1367 1368Strain fitness (log2 ratio) -1 0 1at 1366.112 kb on - strandat 1366.286 kb on - strandat 1366.300 kb on + strandat 1366.472 kb on - strand, within RALBFv3_RS06135at 1366.750 kb on + strand, within RALBFv3_RS06135at 1367.332 kb on - strand, within RALBFv3_RS06140at 1367.376 kb on + strand, within RALBFv3_RS06140at 1367.376 kb on + strand, within RALBFv3_RS06140at 1367.377 kb on - strand, within RALBFv3_RS06140at 1367.387 kb on - strand, within RALBFv3_RS06140at 1367.416 kb on - strand, within RALBFv3_RS06140at 1367.511 kb on + strand, within RALBFv3_RS06140at 1367.511 kb on + strand, within RALBFv3_RS06140at 1367.563 kb on - strand, within RALBFv3_RS06140at 1367.781 kb on - strandat 1367.846 kb on + strand, within RALBFv3_RS06145at 1367.847 kb on - strand, within RALBFv3_RS06145at 1367.847 kb on - strand, within RALBFv3_RS06145at 1368.315 kb on - strand, within RALBFv3_RS06145

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,366,112 - -0.3
1,366,286 - -1.0
1,366,300 + +0.2
1,366,472 - RALBFv3_RS06135 0.21 -0.4
1,366,750 + RALBFv3_RS06135 0.59 -0.9
1,367,332 - RALBFv3_RS06140 0.44 +0.1
1,367,376 + RALBFv3_RS06140 0.51 -0.7
1,367,376 + RALBFv3_RS06140 0.51 -0.1
1,367,377 - RALBFv3_RS06140 0.51 -0.8
1,367,387 - RALBFv3_RS06140 0.53 -0.4
1,367,416 - RALBFv3_RS06140 0.58 -0.8
1,367,511 + RALBFv3_RS06140 0.73 -0.8
1,367,511 + RALBFv3_RS06140 0.73 -0.0
1,367,563 - RALBFv3_RS06140 0.81 -0.7
1,367,781 - +0.4
1,367,846 + RALBFv3_RS06145 0.10 +0.3
1,367,847 - RALBFv3_RS06145 0.10 -0.1
1,367,847 - RALBFv3_RS06145 0.10 -0.1
1,368,315 - RALBFv3_RS06145 0.52 +0.4

Or see this region's nucleotide sequence