Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04305 and RALBFv3_RS04310 are separated by 19 nucleotides RALBFv3_RS04310 and RALBFv3_RS04315 overlap by 4 nucleotides RALBFv3_RS04315 and RALBFv3_RS04320 are separated by 37 nucleotides
RALBFv3_RS04305: RALBFv3_RS04305 - type I-E CRISPR-associated protein Cas7/Cse4/CasC, at 962,137 to 963,171
_RS04305
RALBFv3_RS04310: RALBFv3_RS04310 - type I-E CRISPR-associated protein Cse2/CasB, at 963,191 to 963,790
_RS04310
RALBFv3_RS04315: RALBFv3_RS04315 - type I-E CRISPR-associated protein Cse1/CasA, at 963,787 to 965,355
_RS04315
RALBFv3_RS04320: RALBFv3_RS04320 - CRISPR-associated helicase/endonuclease Cas3, at 965,393 to 968,125
_RS04320
Position (kb) 963
964
965
966 Strain fitness (log2 ratio) -1
0
1 at 962.879 kb on + strand, within RALBFv3_RS04305 at 962.879 kb on + strand, within RALBFv3_RS04305 at 962.880 kb on - strand, within RALBFv3_RS04305 at 963.219 kb on + strand at 963.219 kb on + strand at 963.223 kb on - strand at 963.413 kb on + strand, within RALBFv3_RS04310 at 963.414 kb on - strand, within RALBFv3_RS04310 at 963.537 kb on + strand, within RALBFv3_RS04310 at 963.537 kb on + strand, within RALBFv3_RS04310 at 963.537 kb on + strand, within RALBFv3_RS04310 at 963.778 kb on + strand at 963.779 kb on - strand at 963.965 kb on - strand, within RALBFv3_RS04315 at 964.044 kb on + strand, within RALBFv3_RS04315 at 964.044 kb on + strand, within RALBFv3_RS04315 at 964.045 kb on - strand, within RALBFv3_RS04315 at 964.045 kb on - strand, within RALBFv3_RS04315 at 964.047 kb on - strand, within RALBFv3_RS04315 at 964.047 kb on - strand, within RALBFv3_RS04315 at 964.254 kb on - strand, within RALBFv3_RS04315 at 964.506 kb on - strand, within RALBFv3_RS04315 at 964.517 kb on + strand, within RALBFv3_RS04315 at 964.632 kb on - strand, within RALBFv3_RS04315 at 965.100 kb on - strand, within RALBFv3_RS04315 at 965.216 kb on + strand at 965.216 kb on + strand at 965.308 kb on - strand at 965.347 kb on + strand at 965.347 kb on + strand at 965.348 kb on - strand at 965.348 kb on - strand at 965.402 kb on + strand at 965.402 kb on + strand at 965.402 kb on + strand at 965.402 kb on + strand at 965.402 kb on + strand at 965.403 kb on - strand at 965.403 kb on - strand at 965.458 kb on - strand at 965.737 kb on - strand, within RALBFv3_RS04320 at 965.764 kb on - strand, within RALBFv3_RS04320 at 965.883 kb on + strand, within RALBFv3_RS04320 at 965.884 kb on - strand, within RALBFv3_RS04320 at 965.884 kb on - strand, within RALBFv3_RS04320 at 966.034 kb on - strand, within RALBFv3_RS04320 at 966.034 kb on - strand, within RALBFv3_RS04320 at 966.078 kb on + strand, within RALBFv3_RS04320 at 966.079 kb on - strand, within RALBFv3_RS04320 at 966.079 kb on - strand, within RALBFv3_RS04320
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 962,879 + RALBFv3_RS04305 0.72 -0.1 962,879 + RALBFv3_RS04305 0.72 +1.0 962,880 - RALBFv3_RS04305 0.72 -0.7 963,219 + +1.3 963,219 + -0.6 963,223 - -0.4 963,413 + RALBFv3_RS04310 0.37 +0.1 963,414 - RALBFv3_RS04310 0.37 -0.2 963,537 + RALBFv3_RS04310 0.58 +0.8 963,537 + RALBFv3_RS04310 0.58 +0.6 963,537 + RALBFv3_RS04310 0.58 +0.3 963,778 + +0.3 963,779 - -0.4 963,965 - RALBFv3_RS04315 0.11 +0.7 964,044 + RALBFv3_RS04315 0.16 -0.2 964,044 + RALBFv3_RS04315 0.16 +0.1 964,045 - RALBFv3_RS04315 0.16 -0.6 964,045 - RALBFv3_RS04315 0.16 +1.1 964,047 - RALBFv3_RS04315 0.17 +0.7 964,047 - RALBFv3_RS04315 0.17 +1.0 964,254 - RALBFv3_RS04315 0.30 -0.0 964,506 - RALBFv3_RS04315 0.46 -0.7 964,517 + RALBFv3_RS04315 0.47 +1.4 964,632 - RALBFv3_RS04315 0.54 +0.1 965,100 - RALBFv3_RS04315 0.84 +0.5 965,216 + +0.2 965,216 + +0.5 965,308 - +0.0 965,347 + +0.3 965,347 + +0.9 965,348 - -0.8 965,348 - -0.0 965,402 + +0.3 965,402 + -0.2 965,402 + -0.1 965,402 + +0.1 965,402 + -0.4 965,403 - +0.6 965,403 - +0.3 965,458 - -0.6 965,737 - RALBFv3_RS04320 0.13 +0.1 965,764 - RALBFv3_RS04320 0.14 +0.3 965,883 + RALBFv3_RS04320 0.18 +0.4 965,884 - RALBFv3_RS04320 0.18 -0.2 965,884 - RALBFv3_RS04320 0.18 +0.1 966,034 - RALBFv3_RS04320 0.23 -0.4 966,034 - RALBFv3_RS04320 0.23 -0.3 966,078 + RALBFv3_RS04320 0.25 -0.4 966,079 - RALBFv3_RS04320 0.25 +0.1 966,079 - RALBFv3_RS04320 0.25 +0.2
Or see this region's nucleotide sequence