Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00690 and RALBFv3_RS00695 are separated by 4 nucleotides RALBFv3_RS00695 and RALBFv3_RS00700 are separated by 8 nucleotides RALBFv3_RS00700 and RALBFv3_RS00705 are separated by 35 nucleotides
RALBFv3_RS00690: RALBFv3_RS00690 - VWA domain-containing protein, at 153,350 to 154,576
_RS00690
RALBFv3_RS00695: RALBFv3_RS00695 - MoxR family ATPase, at 154,581 to 155,507
_RS00695
RALBFv3_RS00700: RALBFv3_RS00700 - xanthine dehydrogenase family protein subunit M, at 155,516 to 156,322
_RS00700
RALBFv3_RS00705: RALBFv3_RS00705 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 156,358 to 158,742
_RS00705
Position (kb) 155
156
157 Strain fitness (log2 ratio) -1
0
1
2 at 154.654 kb on + strand at 154.654 kb on + strand at 155.192 kb on - strand, within RALBFv3_RS00695 at 155.303 kb on - strand, within RALBFv3_RS00695 at 155.303 kb on - strand, within RALBFv3_RS00695 at 155.700 kb on - strand, within RALBFv3_RS00700 at 155.805 kb on + strand, within RALBFv3_RS00700 at 155.875 kb on - strand, within RALBFv3_RS00700 at 155.958 kb on + strand, within RALBFv3_RS00700 at 156.243 kb on + strand at 156.244 kb on - strand at 156.318 kb on + strand at 156.318 kb on + strand at 156.318 kb on + strand at 156.319 kb on - strand at 156.402 kb on - strand at 156.641 kb on + strand, within RALBFv3_RS00705 at 157.094 kb on + strand, within RALBFv3_RS00705 at 157.094 kb on + strand, within RALBFv3_RS00705 at 157.094 kb on + strand, within RALBFv3_RS00705 at 157.095 kb on - strand, within RALBFv3_RS00705
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 154,654 + +1.6 154,654 + -0.5 155,192 - RALBFv3_RS00695 0.66 -0.3 155,303 - RALBFv3_RS00695 0.78 +2.3 155,303 - RALBFv3_RS00695 0.78 +0.9 155,700 - RALBFv3_RS00700 0.23 -0.3 155,805 + RALBFv3_RS00700 0.36 -1.0 155,875 - RALBFv3_RS00700 0.44 +0.0 155,958 + RALBFv3_RS00700 0.55 -0.6 156,243 + -0.4 156,244 - -0.2 156,318 + +0.0 156,318 + +1.3 156,318 + -0.7 156,319 - +0.0 156,402 - +0.3 156,641 + RALBFv3_RS00705 0.12 -0.8 157,094 + RALBFv3_RS00705 0.31 -0.3 157,094 + RALBFv3_RS00705 0.31 +0.1 157,094 + RALBFv3_RS00705 0.31 -1.3 157,095 - RALBFv3_RS00705 0.31 +0.6
Or see this region's nucleotide sequence