Strain Fitness in Pantoea sp. MT58 around IAI47_20250

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20240 and IAI47_20245 overlap by 14 nucleotidesIAI47_20245 and IAI47_20250 are separated by 51 nucleotidesIAI47_20250 and IAI47_20255 are separated by 177 nucleotides IAI47_20240: IAI47_20240 - sigma-70 family RNA polymerase sigma factor, at 283,185 to 283,739 _20240 IAI47_20245: IAI47_20245 - DUF1109 domain-containing protein, at 283,726 to 284,367 _20245 IAI47_20250: IAI47_20250 - DeoR family transcriptional regulator, at 284,419 to 284,580 _20250 IAI47_20255: IAI47_20255 - alpha/beta fold hydrolase, at 284,758 to 285,618 _20255 Position (kb) 284 285Strain fitness (log2 ratio) -2 -1 0 1 2at 283.451 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.451 kb on + strand, within IAI47_20240at 283.452 kb on - strand, within IAI47_20240at 283.452 kb on - strand, within IAI47_20240at 283.452 kb on - strand, within IAI47_20240at 283.452 kb on - strand, within IAI47_20240at 283.484 kb on - strand, within IAI47_20240at 283.484 kb on - strand, within IAI47_20240at 283.484 kb on - strand, within IAI47_20240at 283.547 kb on + strand, within IAI47_20240at 283.570 kb on + strand, within IAI47_20240at 283.580 kb on - strand, within IAI47_20240at 283.606 kb on + strand, within IAI47_20240at 283.606 kb on + strand, within IAI47_20240at 283.606 kb on + strand, within IAI47_20240at 283.607 kb on - strand, within IAI47_20240at 283.607 kb on - strand, within IAI47_20240at 283.671 kb on - strand, within IAI47_20240at 283.704 kb on - strandat 283.710 kb on + strandat 283.711 kb on - strandat 283.711 kb on - strandat 283.711 kb on - strandat 283.745 kb on + strandat 283.745 kb on + strandat 283.875 kb on + strand, within IAI47_20245at 283.965 kb on + strand, within IAI47_20245at 283.966 kb on - strand, within IAI47_20245at 284.052 kb on + strand, within IAI47_20245at 284.052 kb on + strand, within IAI47_20245at 284.052 kb on + strand, within IAI47_20245at 284.052 kb on + strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.053 kb on - strand, within IAI47_20245at 284.110 kb on + strand, within IAI47_20245at 284.110 kb on + strand, within IAI47_20245at 284.110 kb on + strand, within IAI47_20245at 284.110 kb on + strand, within IAI47_20245at 284.111 kb on - strand, within IAI47_20245at 284.111 kb on - strand, within IAI47_20245at 284.118 kb on + strand, within IAI47_20245at 284.118 kb on + strand, within IAI47_20245at 284.118 kb on + strand, within IAI47_20245at 284.119 kb on - strand, within IAI47_20245at 284.119 kb on - strand, within IAI47_20245at 284.274 kb on + strand, within IAI47_20245at 284.278 kb on - strand, within IAI47_20245at 284.289 kb on + strand, within IAI47_20245at 284.289 kb on + strand, within IAI47_20245at 284.310 kb on + strandat 284.313 kb on + strandat 284.314 kb on - strandat 284.314 kb on - strandat 284.314 kb on - strandat 284.365 kb on + strandat 284.365 kb on + strandat 284.366 kb on - strandat 284.378 kb on + strandat 284.378 kb on + strandat 284.378 kb on + strandat 284.378 kb on + strandat 284.379 kb on - strandat 284.379 kb on - strandat 284.379 kb on - strandat 284.381 kb on + strandat 284.382 kb on - strandat 284.382 kb on - strandat 284.418 kb on + strandat 284.418 kb on + strandat 284.418 kb on + strandat 284.511 kb on + strand, within IAI47_20250at 284.512 kb on - strand, within IAI47_20250at 284.512 kb on - strand, within IAI47_20250at 284.512 kb on - strand, within IAI47_20250at 284.512 kb on - strand, within IAI47_20250at 284.570 kb on - strandat 284.570 kb on - strandat 284.578 kb on + strandat 284.578 kb on + strandat 284.579 kb on - strandat 284.612 kb on + strandat 284.613 kb on - strandat 284.759 kb on + strandat 284.793 kb on + strandat 284.793 kb on + strandat 284.794 kb on - strandat 284.822 kb on + strandat 284.822 kb on + strandat 284.823 kb on - strandat 284.826 kb on + strandat 284.827 kb on - strandat 284.866 kb on - strand, within IAI47_20255at 284.866 kb on - strand, within IAI47_20255at 284.987 kb on + strand, within IAI47_20255at 284.988 kb on - strand, within IAI47_20255at 284.988 kb on - strand, within IAI47_20255at 285.010 kb on + strand, within IAI47_20255at 285.045 kb on + strand, within IAI47_20255at 285.045 kb on + strand, within IAI47_20255at 285.045 kb on + strand, within IAI47_20255at 285.046 kb on - strand, within IAI47_20255at 285.046 kb on - strand, within IAI47_20255at 285.159 kb on + strand, within IAI47_20255at 285.159 kb on + strand, within IAI47_20255at 285.160 kb on - strand, within IAI47_20255at 285.160 kb on - strand, within IAI47_20255at 285.160 kb on - strand, within IAI47_20255at 285.160 kb on - strand, within IAI47_20255at 285.165 kb on + strand, within IAI47_20255at 285.165 kb on + strand, within IAI47_20255at 285.165 kb on + strand, within IAI47_20255at 285.166 kb on - strand, within IAI47_20255at 285.310 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.316 kb on + strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.317 kb on - strand, within IAI47_20255at 285.372 kb on + strand, within IAI47_20255at 285.372 kb on + strand, within IAI47_20255at 285.437 kb on + strand, within IAI47_20255at 285.438 kb on - strand, within IAI47_20255at 285.438 kb on - strand, within IAI47_20255at 285.472 kb on - strand, within IAI47_20255at 285.534 kb on + strandat 285.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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283,451 + IAI47_20240 0.48 -2.2
283,451 + IAI47_20240 0.48 +1.3
283,451 + IAI47_20240 0.48 -1.5
283,451 + IAI47_20240 0.48 -1.5
283,451 + IAI47_20240 0.48 +0.3
283,452 - IAI47_20240 0.48 -0.8
283,452 - IAI47_20240 0.48 +2.0
283,452 - IAI47_20240 0.48 +0.5
283,452 - IAI47_20240 0.48 +0.5
283,484 - IAI47_20240 0.54 +1.8
283,484 - IAI47_20240 0.54 -0.1
283,484 - IAI47_20240 0.54 -0.4
283,547 + IAI47_20240 0.65 -0.5
283,570 + IAI47_20240 0.69 -1.2
283,580 - IAI47_20240 0.71 +2.2
283,606 + IAI47_20240 0.76 +1.9
283,606 + IAI47_20240 0.76 +1.4
283,606 + IAI47_20240 0.76 +0.7
283,607 - IAI47_20240 0.76 -1.0
283,607 - IAI47_20240 0.76 +0.8
283,671 - IAI47_20240 0.88 -0.5
283,704 - +2.2
283,710 + -0.3
283,711 - -0.1
283,711 - -1.2
283,711 - -1.8
283,745 + -0.8
283,745 + +0.7
283,875 + IAI47_20245 0.23 -0.4
283,965 + IAI47_20245 0.37 -1.1
283,966 - IAI47_20245 0.37 -0.3
284,052 + IAI47_20245 0.51 -0.5
284,052 + IAI47_20245 0.51 -1.7
284,052 + IAI47_20245 0.51 -0.0
284,052 + IAI47_20245 0.51 -0.1
284,053 - IAI47_20245 0.51 -0.6
284,053 - IAI47_20245 0.51 +0.2
284,053 - IAI47_20245 0.51 -1.5
284,053 - IAI47_20245 0.51 +2.7
284,053 - IAI47_20245 0.51 +0.0
284,053 - IAI47_20245 0.51 -2.0
284,053 - IAI47_20245 0.51 -0.5
284,110 + IAI47_20245 0.60 +1.3
284,110 + IAI47_20245 0.60 +0.1
284,110 + IAI47_20245 0.60 -2.6
284,110 + IAI47_20245 0.60 +1.2
284,111 - IAI47_20245 0.60 +0.7
284,111 - IAI47_20245 0.60 -0.9
284,118 + IAI47_20245 0.61 +0.8
284,118 + IAI47_20245 0.61 -1.4
284,118 + IAI47_20245 0.61 -0.2
284,119 - IAI47_20245 0.61 +1.1
284,119 - IAI47_20245 0.61 -1.4
284,274 + IAI47_20245 0.85 +0.2
284,278 - IAI47_20245 0.86 -0.7
284,289 + IAI47_20245 0.88 +2.6
284,289 + IAI47_20245 0.88 -1.5
284,310 + -0.9
284,313 + -0.7
284,314 - +0.4
284,314 - -2.1
284,314 - +0.4
284,365 + -0.2
284,365 + +1.6
284,366 - -1.1
284,378 + -0.8
284,378 + +0.3
284,378 + -2.0
284,378 + +0.6
284,379 - +0.1
284,379 - +0.5
284,379 - +2.2
284,381 + +0.3
284,382 - +1.1
284,382 - +0.3
284,418 + -0.2
284,418 + +1.0
284,418 + +0.7
284,511 + IAI47_20250 0.57 -0.5
284,512 - IAI47_20250 0.57 -0.9
284,512 - IAI47_20250 0.57 +0.2
284,512 - IAI47_20250 0.57 -0.2
284,512 - IAI47_20250 0.57 -0.8
284,570 - +0.2
284,570 - +0.1
284,578 + +1.0
284,578 + +0.6
284,579 - +1.3
284,612 + +0.9
284,613 - -1.0
284,759 + -0.2
284,793 + +0.6
284,793 + -0.3
284,794 - +0.8
284,822 + -0.5
284,822 + -0.9
284,823 - +0.9
284,826 + +1.1
284,827 - -0.3
284,866 - IAI47_20255 0.13 +0.8
284,866 - IAI47_20255 0.13 -1.5
284,987 + IAI47_20255 0.27 -1.1
284,988 - IAI47_20255 0.27 +0.3
284,988 - IAI47_20255 0.27 -1.5
285,010 + IAI47_20255 0.29 -1.0
285,045 + IAI47_20255 0.33 -2.1
285,045 + IAI47_20255 0.33 -0.4
285,045 + IAI47_20255 0.33 -0.8
285,046 - IAI47_20255 0.33 +0.5
285,046 - IAI47_20255 0.33 +0.4
285,159 + IAI47_20255 0.47 -1.1
285,159 + IAI47_20255 0.47 +1.3
285,160 - IAI47_20255 0.47 -0.3
285,160 - IAI47_20255 0.47 +0.2
285,160 - IAI47_20255 0.47 -0.2
285,160 - IAI47_20255 0.47 -0.7
285,165 + IAI47_20255 0.47 +0.3
285,165 + IAI47_20255 0.47 +0.5
285,165 + IAI47_20255 0.47 -0.5
285,166 - IAI47_20255 0.47 +1.2
285,310 + IAI47_20255 0.64 +0.8
285,316 + IAI47_20255 0.65 -1.7
285,316 + IAI47_20255 0.65 +0.5
285,316 + IAI47_20255 0.65 +0.9
285,316 + IAI47_20255 0.65 +2.3
285,316 + IAI47_20255 0.65 +0.1
285,316 + IAI47_20255 0.65 -0.9
285,317 - IAI47_20255 0.65 +0.3
285,317 - IAI47_20255 0.65 -0.8
285,317 - IAI47_20255 0.65 +0.2
285,317 - IAI47_20255 0.65 -1.5
285,317 - IAI47_20255 0.65 -0.4
285,372 + IAI47_20255 0.71 -1.2
285,372 + IAI47_20255 0.71 -0.4
285,437 + IAI47_20255 0.79 +0.8
285,438 - IAI47_20255 0.79 +0.3
285,438 - IAI47_20255 0.79 -0.5
285,472 - IAI47_20255 0.83 -0.9
285,534 + +0.6
285,535 - +2.1

Or see this region's nucleotide sequence