Strain Fitness in Pantoea sp. MT58 around IAI47_20195

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20190 and IAI47_20195 are separated by 98 nucleotidesIAI47_20195 and IAI47_20200 are separated by 99 nucleotidesIAI47_20200 and IAI47_20205 overlap by 16 nucleotides IAI47_20190: IAI47_20190 - urea carboxylase, at 269,444 to 273,049 _20190 IAI47_20195: IAI47_20195 - LysR family transcriptional regulator, at 273,148 to 274,053 _20195 IAI47_20200: IAI47_20200 - 2OG-Fe(II) oxygenase, at 274,153 to 274,926 _20200 IAI47_20205: IAI47_20205 - DUF2817 domain-containing protein, at 274,911 to 275,996 _20205 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 272.159 kb on + strand, within IAI47_20190at 272.160 kb on - strand, within IAI47_20190at 272.160 kb on - strand, within IAI47_20190at 272.161 kb on + strand, within IAI47_20190at 272.162 kb on - strand, within IAI47_20190at 272.162 kb on - strand, within IAI47_20190at 272.162 kb on - strand, within IAI47_20190at 272.167 kb on + strand, within IAI47_20190at 272.167 kb on + strand, within IAI47_20190at 272.168 kb on - strand, within IAI47_20190at 272.168 kb on - strand, within IAI47_20190at 272.201 kb on - strand, within IAI47_20190at 272.201 kb on - strand, within IAI47_20190at 272.276 kb on + strand, within IAI47_20190at 272.276 kb on + strand, within IAI47_20190at 272.277 kb on - strand, within IAI47_20190at 272.303 kb on + strand, within IAI47_20190at 272.304 kb on - strand, within IAI47_20190at 272.304 kb on - strand, within IAI47_20190at 272.304 kb on - strand, within IAI47_20190at 272.304 kb on - strand, within IAI47_20190at 272.363 kb on + strand, within IAI47_20190at 272.363 kb on + strand, within IAI47_20190at 272.363 kb on + strand, within IAI47_20190at 272.364 kb on - strand, within IAI47_20190at 272.364 kb on - strand, within IAI47_20190at 272.364 kb on - strand, within IAI47_20190at 272.364 kb on - strand, within IAI47_20190at 272.365 kb on + strand, within IAI47_20190at 272.365 kb on + strand, within IAI47_20190at 272.417 kb on + strand, within IAI47_20190at 272.429 kb on + strand, within IAI47_20190at 272.529 kb on + strand, within IAI47_20190at 272.529 kb on + strand, within IAI47_20190at 272.529 kb on + strand, within IAI47_20190at 272.530 kb on - strand, within IAI47_20190at 272.627 kb on - strand, within IAI47_20190at 272.657 kb on + strand, within IAI47_20190at 272.658 kb on - strand, within IAI47_20190at 272.658 kb on - strand, within IAI47_20190at 272.690 kb on - strandat 272.690 kb on - strandat 272.859 kb on + strandat 272.868 kb on + strandat 272.868 kb on + strandat 272.869 kb on - strandat 272.869 kb on - strandat 272.965 kb on + strandat 272.965 kb on + strandat 272.965 kb on + strandat 272.966 kb on - strandat 272.966 kb on - strandat 272.985 kb on + strandat 272.985 kb on + strandat 272.985 kb on + strandat 272.986 kb on - strandat 273.047 kb on + strandat 273.047 kb on + strandat 273.048 kb on - strandat 273.057 kb on + strandat 273.057 kb on + strandat 273.057 kb on + strandat 273.057 kb on + strandat 273.057 kb on + strandat 273.057 kb on + strandat 273.059 kb on + strandat 273.059 kb on + strandat 273.059 kb on + strandat 273.059 kb on + strandat 273.059 kb on + strandat 273.059 kb on + strandat 273.059 kb on + strandat 273.060 kb on - strandat 273.060 kb on - strandat 273.060 kb on - strandat 273.060 kb on - strandat 273.064 kb on + strandat 273.065 kb on - strandat 273.065 kb on - strandat 273.072 kb on + strandat 273.072 kb on + strandat 273.072 kb on + strandat 273.072 kb on + strandat 273.073 kb on - strandat 273.073 kb on - strandat 273.073 kb on - strandat 273.110 kb on + strandat 273.110 kb on + strandat 273.111 kb on - strandat 273.111 kb on - strandat 273.133 kb on + strandat 273.133 kb on + strandat 273.133 kb on + strandat 273.134 kb on - strandat 273.236 kb on + strandat 273.237 kb on - strandat 273.237 kb on - strandat 273.272 kb on - strand, within IAI47_20195at 273.376 kb on - strand, within IAI47_20195at 273.381 kb on + strand, within IAI47_20195at 273.381 kb on + strand, within IAI47_20195at 273.382 kb on - strand, within IAI47_20195at 273.664 kb on + strand, within IAI47_20195at 273.664 kb on + strand, within IAI47_20195at 273.664 kb on + strand, within IAI47_20195at 273.665 kb on - strand, within IAI47_20195at 273.665 kb on - strand, within IAI47_20195at 273.665 kb on - strand, within IAI47_20195at 273.679 kb on - strand, within IAI47_20195at 273.749 kb on + strand, within IAI47_20195at 273.749 kb on + strand, within IAI47_20195at 273.750 kb on - strand, within IAI47_20195at 273.750 kb on - strand, within IAI47_20195at 273.750 kb on - strand, within IAI47_20195at 273.750 kb on - strand, within IAI47_20195at 273.750 kb on - strand, within IAI47_20195at 273.810 kb on + strand, within IAI47_20195at 273.830 kb on + strand, within IAI47_20195at 273.830 kb on + strand, within IAI47_20195at 273.830 kb on + strand, within IAI47_20195at 273.831 kb on - strand, within IAI47_20195at 273.831 kb on - strand, within IAI47_20195at 273.831 kb on - strand, within IAI47_20195at 273.831 kb on - strand, within IAI47_20195at 273.839 kb on + strand, within IAI47_20195at 273.839 kb on + strand, within IAI47_20195at 273.840 kb on - strand, within IAI47_20195at 274.012 kb on + strandat 274.012 kb on + strandat 274.012 kb on + strandat 274.012 kb on + strandat 274.013 kb on - strandat 274.013 kb on - strandat 274.013 kb on - strandat 274.013 kb on - strandat 274.065 kb on + strandat 274.076 kb on + strandat 274.076 kb on + strandat 274.113 kb on + strandat 274.113 kb on + strandat 274.113 kb on + strandat 274.113 kb on + strandat 274.113 kb on + strandat 274.114 kb on - strandat 274.114 kb on - strandat 274.118 kb on + strandat 274.118 kb on + strandat 274.118 kb on + strandat 274.124 kb on + strandat 274.124 kb on + strandat 274.124 kb on + strandat 274.124 kb on + strandat 274.124 kb on + strandat 274.124 kb on + strandat 274.124 kb on + strandat 274.125 kb on - strandat 274.125 kb on - strandat 274.125 kb on - strandat 274.125 kb on - strandat 274.125 kb on - strandat 274.125 kb on - strandat 274.125 kb on - strandat 274.125 kb on - strandat 274.125 kb on - strandat 274.152 kb on + strandat 274.152 kb on + strandat 274.152 kb on + strandat 274.152 kb on + strandat 274.152 kb on + strandat 274.152 kb on + strandat 274.152 kb on + strandat 274.152 kb on + strandat 274.152 kb on + strandat 274.153 kb on - strandat 274.229 kb on + strandat 274.230 kb on - strandat 274.230 kb on - strandat 274.230 kb on - strandat 274.230 kb on - strandat 274.250 kb on + strand, within IAI47_20200at 274.324 kb on + strand, within IAI47_20200at 274.324 kb on + strand, within IAI47_20200at 274.324 kb on + strand, within IAI47_20200at 274.324 kb on + strand, within IAI47_20200at 274.329 kb on + strand, within IAI47_20200at 274.330 kb on - strand, within IAI47_20200at 274.351 kb on + strand, within IAI47_20200at 274.352 kb on - strand, within IAI47_20200at 274.352 kb on - strand, within IAI47_20200at 274.352 kb on - strand, within IAI47_20200at 274.425 kb on + strand, within IAI47_20200at 274.426 kb on - strand, within IAI47_20200at 274.426 kb on - strand, within IAI47_20200at 274.426 kb on - strand, within IAI47_20200at 274.426 kb on - strand, within IAI47_20200at 274.426 kb on - strand, within IAI47_20200at 274.426 kb on - strand, within IAI47_20200at 274.428 kb on + strand, within IAI47_20200at 274.428 kb on + strand, within IAI47_20200at 274.429 kb on - strand, within IAI47_20200at 274.429 kb on - strand, within IAI47_20200at 274.429 kb on - strand, within IAI47_20200at 274.429 kb on - strand, within IAI47_20200at 274.429 kb on - strand, within IAI47_20200at 274.471 kb on + strand, within IAI47_20200at 274.472 kb on - strand, within IAI47_20200at 274.472 kb on - strand, within IAI47_20200at 274.472 kb on - strand, within IAI47_20200at 274.473 kb on + strand, within IAI47_20200at 274.473 kb on + strand, within IAI47_20200at 274.473 kb on + strand, within IAI47_20200at 274.473 kb on + strand, within IAI47_20200at 274.473 kb on + strand, within IAI47_20200at 274.473 kb on + strand, within IAI47_20200at 274.474 kb on - strand, within IAI47_20200at 274.474 kb on - strand, within IAI47_20200at 274.474 kb on - strand, within IAI47_20200at 274.474 kb on - strand, within IAI47_20200at 274.528 kb on + strand, within IAI47_20200at 274.528 kb on + strand, within IAI47_20200at 274.534 kb on + strand, within IAI47_20200at 274.534 kb on + strand, within IAI47_20200at 274.534 kb on + strand, within IAI47_20200at 274.535 kb on - strand, within IAI47_20200at 274.567 kb on + strand, within IAI47_20200at 274.567 kb on + strand, within IAI47_20200at 274.567 kb on + strand, within IAI47_20200at 274.567 kb on + strand, within IAI47_20200at 274.621 kb on - strand, within IAI47_20200at 274.666 kb on + strand, within IAI47_20200at 274.666 kb on + strand, within IAI47_20200at 274.749 kb on + strand, within IAI47_20200at 274.797 kb on + strand, within IAI47_20200at 274.854 kb on - strandat 274.861 kb on + strandat 274.862 kb on - strandat 274.862 kb on - strandat 274.862 kb on - strandat 274.866 kb on + strandat 274.902 kb on + strandat 274.922 kb on + strandat 274.922 kb on + strandat 274.923 kb on - strandat 274.923 kb on - strandat 274.923 kb on - strandat 274.943 kb on + strandat 274.943 kb on + strandat 274.944 kb on - strandat 274.979 kb on + strandat 274.993 kb on - strandat 275.031 kb on + strand, within IAI47_20205

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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272,159 + IAI47_20190 0.75 -0.7
272,160 - IAI47_20190 0.75 -0.6
272,160 - IAI47_20190 0.75 +0.7
272,161 + IAI47_20190 0.75 +1.3
272,162 - IAI47_20190 0.75 -1.1
272,162 - IAI47_20190 0.75 -0.4
272,162 - IAI47_20190 0.75 -1.0
272,167 + IAI47_20190 0.76 -1.0
272,167 + IAI47_20190 0.76 -1.5
272,168 - IAI47_20190 0.76 -1.4
272,168 - IAI47_20190 0.76 +2.6
272,201 - IAI47_20190 0.76 -0.6
272,201 - IAI47_20190 0.76 +1.7
272,276 + IAI47_20190 0.79 -0.3
272,276 + IAI47_20190 0.79 +1.1
272,277 - IAI47_20190 0.79 -1.1
272,303 + IAI47_20190 0.79 -1.1
272,304 - IAI47_20190 0.79 +0.6
272,304 - IAI47_20190 0.79 -1.4
272,304 - IAI47_20190 0.79 +0.3
272,304 - IAI47_20190 0.79 +0.3
272,363 + IAI47_20190 0.81 -0.4
272,363 + IAI47_20190 0.81 -2.6
272,363 + IAI47_20190 0.81 -0.2
272,364 - IAI47_20190 0.81 +0.7
272,364 - IAI47_20190 0.81 +0.5
272,364 - IAI47_20190 0.81 +0.8
272,364 - IAI47_20190 0.81 +2.5
272,365 + IAI47_20190 0.81 +3.5
272,365 + IAI47_20190 0.81 -0.0
272,417 + IAI47_20190 0.82 +0.4
272,429 + IAI47_20190 0.83 -0.0
272,529 + IAI47_20190 0.86 +0.4
272,529 + IAI47_20190 0.86 -0.4
272,529 + IAI47_20190 0.86 -0.8
272,530 - IAI47_20190 0.86 -0.4
272,627 - IAI47_20190 0.88 +1.3
272,657 + IAI47_20190 0.89 +1.0
272,658 - IAI47_20190 0.89 +0.9
272,658 - IAI47_20190 0.89 -1.1
272,690 - +0.7
272,690 - -0.7
272,859 + -0.9
272,868 + +2.0
272,868 + -1.0
272,869 - -0.8
272,869 - +0.8
272,965 + +0.2
272,965 + +0.0
272,965 + -0.6
272,966 - -0.8
272,966 - -1.6
272,985 + -1.6
272,985 + +0.6
272,985 + +0.9
272,986 - -2.3
273,047 + -1.7
273,047 + +0.3
273,048 - -0.3
273,057 + +0.3
273,057 + +0.4
273,057 + +0.1
273,057 + +3.9
273,057 + +0.3
273,057 + -0.9
273,059 + -0.3
273,059 + +0.2
273,059 + +0.7
273,059 + -0.2
273,059 + -1.2
273,059 + -1.6
273,059 + +0.7
273,060 - -1.7
273,060 - -1.4
273,060 - +1.3
273,060 - -1.2
273,064 + -0.9
273,065 - +0.6
273,065 - -1.0
273,072 + +1.0
273,072 + -0.6
273,072 + +0.7
273,072 + +0.7
273,073 - -0.3
273,073 - +0.0
273,073 - +1.1
273,110 + +0.2
273,110 + +1.6
273,111 - +0.1
273,111 - -1.5
273,133 + +0.1
273,133 + +1.1
273,133 + +0.1
273,134 - -1.5
273,236 + +0.1
273,237 - -0.7
273,237 - -0.8
273,272 - IAI47_20195 0.14 +1.5
273,376 - IAI47_20195 0.25 +1.1
273,381 + IAI47_20195 0.26 -0.2
273,381 + IAI47_20195 0.26 +0.1
273,382 - IAI47_20195 0.26 -1.0
273,664 + IAI47_20195 0.57 -0.2
273,664 + IAI47_20195 0.57 +0.1
273,664 + IAI47_20195 0.57 -1.7
273,665 - IAI47_20195 0.57 -0.8
273,665 - IAI47_20195 0.57 -1.2
273,665 - IAI47_20195 0.57 +0.7
273,679 - IAI47_20195 0.59 -1.9
273,749 + IAI47_20195 0.66 +1.8
273,749 + IAI47_20195 0.66 -0.0
273,750 - IAI47_20195 0.66 +0.1
273,750 - IAI47_20195 0.66 +1.6
273,750 - IAI47_20195 0.66 +1.1
273,750 - IAI47_20195 0.66 -0.0
273,750 - IAI47_20195 0.66 -1.7
273,810 + IAI47_20195 0.73 -0.4
273,830 + IAI47_20195 0.75 +3.9
273,830 + IAI47_20195 0.75 -0.4
273,830 + IAI47_20195 0.75 +2.0
273,831 - IAI47_20195 0.75 -2.3
273,831 - IAI47_20195 0.75 +0.7
273,831 - IAI47_20195 0.75 +0.9
273,831 - IAI47_20195 0.75 +1.1
273,839 + IAI47_20195 0.76 +3.9
273,839 + IAI47_20195 0.76 +2.1
273,840 - IAI47_20195 0.76 +0.3
274,012 + -0.9
274,012 + -1.4
274,012 + -1.3
274,012 + +1.2
274,013 - -1.2
274,013 - -0.2
274,013 - +0.1
274,013 - +2.8
274,065 + -2.1
274,076 + -0.1
274,076 + +1.4
274,113 + +0.3
274,113 + -0.8
274,113 + -0.0
274,113 + -0.7
274,113 + -0.4
274,114 - +0.3
274,114 - +1.4
274,118 + -0.6
274,118 + +1.3
274,118 + -0.5
274,124 + +0.1
274,124 + +1.6
274,124 + -0.5
274,124 + +0.8
274,124 + +0.6
274,124 + -0.9
274,124 + +1.0
274,125 - -0.1
274,125 - +0.9
274,125 - +1.1
274,125 - -1.6
274,125 - +1.8
274,125 - -0.8
274,125 - -0.4
274,125 - +1.3
274,125 - +0.0
274,152 + -0.8
274,152 + +0.5
274,152 + +0.3
274,152 + -0.1
274,152 + -0.2
274,152 + +0.3
274,152 + -0.6
274,152 + -0.6
274,152 + -0.4
274,153 - +0.9
274,229 + +0.3
274,230 - -1.0
274,230 - +0.4
274,230 - +0.4
274,230 - -0.2
274,250 + IAI47_20200 0.13 -1.1
274,324 + IAI47_20200 0.22 +0.5
274,324 + IAI47_20200 0.22 -1.6
274,324 + IAI47_20200 0.22 -0.3
274,324 + IAI47_20200 0.22 +1.2
274,329 + IAI47_20200 0.23 +0.4
274,330 - IAI47_20200 0.23 -2.3
274,351 + IAI47_20200 0.26 -0.2
274,352 - IAI47_20200 0.26 +4.4
274,352 - IAI47_20200 0.26 -0.4
274,352 - IAI47_20200 0.26 -0.3
274,425 + IAI47_20200 0.35 +3.9
274,426 - IAI47_20200 0.35 +1.5
274,426 - IAI47_20200 0.35 -0.8
274,426 - IAI47_20200 0.35 -0.3
274,426 - IAI47_20200 0.35 -0.8
274,426 - IAI47_20200 0.35 -0.3
274,426 - IAI47_20200 0.35 +2.1
274,428 + IAI47_20200 0.36 -0.7
274,428 + IAI47_20200 0.36 -0.5
274,429 - IAI47_20200 0.36 -0.2
274,429 - IAI47_20200 0.36 +0.4
274,429 - IAI47_20200 0.36 +0.2
274,429 - IAI47_20200 0.36 -1.8
274,429 - IAI47_20200 0.36 +0.3
274,471 + IAI47_20200 0.41 -0.4
274,472 - IAI47_20200 0.41 -1.1
274,472 - IAI47_20200 0.41 +0.5
274,472 - IAI47_20200 0.41 +0.6
274,473 + IAI47_20200 0.41 -0.4
274,473 + IAI47_20200 0.41 +0.3
274,473 + IAI47_20200 0.41 -0.7
274,473 + IAI47_20200 0.41 -0.4
274,473 + IAI47_20200 0.41 +0.4
274,473 + IAI47_20200 0.41 -0.9
274,474 - IAI47_20200 0.41 +1.1
274,474 - IAI47_20200 0.41 -2.8
274,474 - IAI47_20200 0.41 +0.6
274,474 - IAI47_20200 0.41 -0.9
274,528 + IAI47_20200 0.48 +2.4
274,528 + IAI47_20200 0.48 -1.4
274,534 + IAI47_20200 0.49 -1.2
274,534 + IAI47_20200 0.49 +1.8
274,534 + IAI47_20200 0.49 +1.8
274,535 - IAI47_20200 0.49 +0.5
274,567 + IAI47_20200 0.53 +0.9
274,567 + IAI47_20200 0.53 +0.1
274,567 + IAI47_20200 0.53 -0.9
274,567 + IAI47_20200 0.53 -0.0
274,621 - IAI47_20200 0.60 +0.2
274,666 + IAI47_20200 0.66 +0.8
274,666 + IAI47_20200 0.66 -1.8
274,749 + IAI47_20200 0.77 -0.4
274,797 + IAI47_20200 0.83 -0.5
274,854 - -0.9
274,861 + +1.3
274,862 - +0.1
274,862 - +1.6
274,862 - -1.2
274,866 + +2.2
274,902 + +2.4
274,922 + -1.4
274,922 + -0.1
274,923 - -0.3
274,923 - +0.1
274,923 - -1.4
274,943 + -0.3
274,943 + +0.8
274,944 - -1.8
274,979 + +0.4
274,993 - -0.1
275,031 + IAI47_20205 0.11 -0.7

Or see this region's nucleotide sequence