Experiment: copper (II) chloride 2 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19040 and IAI47_19045 are separated by 195 nucleotides IAI47_19045 and IAI47_19050 are separated by 246 nucleotides IAI47_19050 and IAI47_19055 are separated by 444 nucleotides
IAI47_19040: IAI47_19040 - hypothetical protein, at 38,225 to 38,518
_19040
IAI47_19045: IAI47_19045 - two-component-system connector protein YcgZ, at 38,714 to 38,959
_19045
IAI47_19050: IAI47_19050 - hypothetical protein, at 39,206 to 39,499
_19050
IAI47_19055: IAI47_19055 - metal ABC transporter substrate-binding protein, at 39,944 to 40,858
_19055
Position (kb) 39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 38.210 kb on + strand at 38.211 kb on - strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.215 kb on - strand at 38.215 kb on - strand at 38.215 kb on - strand at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.369 kb on + strand, within IAI47_19040 at 38.417 kb on + strand, within IAI47_19040 at 38.418 kb on - strand, within IAI47_19040 at 38.418 kb on - strand, within IAI47_19040 at 38.456 kb on + strand, within IAI47_19040 at 38.456 kb on + strand, within IAI47_19040 at 38.477 kb on + strand, within IAI47_19040 at 38.478 kb on - strand, within IAI47_19040 at 38.478 kb on - strand, within IAI47_19040 at 38.514 kb on + strand at 38.514 kb on + strand at 38.514 kb on + strand at 38.514 kb on + strand at 38.515 kb on - strand at 38.515 kb on - strand at 38.515 kb on - strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.563 kb on + strand at 38.564 kb on - strand at 38.597 kb on - strand at 38.609 kb on + strand at 38.609 kb on + strand at 38.609 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.622 kb on - strand at 38.626 kb on - strand at 38.626 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.652 kb on + strand at 38.652 kb on + strand at 38.676 kb on + strand at 38.676 kb on + strand at 38.677 kb on - strand at 38.677 kb on - strand at 38.697 kb on - strand at 38.697 kb on - strand at 38.715 kb on + strand at 38.715 kb on + strand at 38.716 kb on - strand at 38.822 kb on - strand, within IAI47_19045 at 38.833 kb on + strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.896 kb on + strand, within IAI47_19045 at 38.910 kb on + strand, within IAI47_19045 at 38.921 kb on - strand, within IAI47_19045 at 38.926 kb on + strand, within IAI47_19045 at 39.030 kb on + strand at 39.135 kb on + strand at 39.142 kb on - strand at 39.156 kb on + strand at 39.157 kb on - strand at 39.174 kb on - strand at 39.187 kb on + strand at 39.188 kb on - strand at 39.207 kb on + strand at 39.207 kb on + strand at 39.207 kb on + strand at 39.307 kb on + strand, within IAI47_19050 at 39.308 kb on - strand, within IAI47_19050 at 39.339 kb on + strand, within IAI47_19050 at 39.340 kb on - strand, within IAI47_19050 at 39.340 kb on - strand, within IAI47_19050 at 39.345 kb on - strand, within IAI47_19050 at 39.345 kb on - strand, within IAI47_19050 at 39.393 kb on - strand, within IAI47_19050 at 39.401 kb on - strand, within IAI47_19050 at 39.436 kb on + strand, within IAI47_19050 at 39.436 kb on + strand, within IAI47_19050 at 39.524 kb on - strand at 39.527 kb on + strand at 39.528 kb on - strand at 39.528 kb on - strand at 39.533 kb on + strand at 39.534 kb on - strand at 39.534 kb on - strand at 39.539 kb on + strand at 39.540 kb on - strand at 39.634 kb on - strand at 39.636 kb on + strand at 39.637 kb on - strand at 39.637 kb on - strand at 39.652 kb on - strand at 39.652 kb on - strand at 39.675 kb on - strand at 39.687 kb on + strand at 39.688 kb on - strand at 39.740 kb on + strand at 39.782 kb on + strand at 39.783 kb on - strand at 39.785 kb on - strand at 39.861 kb on + strand at 39.862 kb on - strand at 39.875 kb on - strand at 39.875 kb on - strand at 39.875 kb on - strand at 39.884 kb on + strand at 39.884 kb on + strand at 39.884 kb on + strand at 39.887 kb on - strand at 39.887 kb on - strand at 39.898 kb on + strand at 39.899 kb on - strand at 39.903 kb on + strand at 39.903 kb on + strand at 39.904 kb on - strand at 39.904 kb on - strand at 39.904 kb on - strand at 39.907 kb on + strand at 39.908 kb on - strand at 39.908 kb on - strand at 39.921 kb on - strand at 39.954 kb on + strand at 39.955 kb on - strand at 39.955 kb on - strand at 39.955 kb on - strand at 39.955 kb on - strand at 39.963 kb on + strand at 39.964 kb on - strand at 39.975 kb on + strand at 39.976 kb on - strand at 39.976 kb on - strand at 39.976 kb on - strand at 40.015 kb on + strand at 40.015 kb on + strand at 40.015 kb on + strand at 40.015 kb on + strand at 40.015 kb on + strand at 40.015 kb on + strand at 40.015 kb on + strand at 40.015 kb on + strand at 40.016 kb on - strand at 40.016 kb on - strand at 40.016 kb on - strand at 40.016 kb on - strand at 40.034 kb on - strand at 40.034 kb on - strand at 40.051 kb on + strand, within IAI47_19055 at 40.051 kb on + strand, within IAI47_19055 at 40.111 kb on + strand, within IAI47_19055 at 40.111 kb on + strand, within IAI47_19055 at 40.114 kb on + strand, within IAI47_19055 at 40.115 kb on - strand, within IAI47_19055 at 40.131 kb on + strand, within IAI47_19055 at 40.131 kb on + strand, within IAI47_19055 at 40.131 kb on + strand, within IAI47_19055 at 40.131 kb on + strand, within IAI47_19055 at 40.132 kb on - strand, within IAI47_19055 at 40.132 kb on - strand, within IAI47_19055 at 40.132 kb on - strand, within IAI47_19055 at 40.132 kb on - strand, within IAI47_19055 at 40.132 kb on - strand, within IAI47_19055 at 40.132 kb on - strand, within IAI47_19055 at 40.139 kb on + strand, within IAI47_19055 at 40.139 kb on + strand, within IAI47_19055 at 40.139 kb on + strand, within IAI47_19055 at 40.139 kb on + strand, within IAI47_19055 at 40.139 kb on + strand, within IAI47_19055 at 40.139 kb on + strand, within IAI47_19055 at 40.140 kb on - strand, within IAI47_19055 at 40.140 kb on - strand, within IAI47_19055 at 40.148 kb on - strand, within IAI47_19055 at 40.159 kb on + strand, within IAI47_19055 at 40.160 kb on - strand, within IAI47_19055 at 40.162 kb on + strand, within IAI47_19055 at 40.162 kb on + strand, within IAI47_19055 at 40.163 kb on - strand, within IAI47_19055 at 40.163 kb on - strand, within IAI47_19055 at 40.232 kb on + strand, within IAI47_19055 at 40.233 kb on - strand, within IAI47_19055 at 40.233 kb on - strand, within IAI47_19055 at 40.278 kb on + strand, within IAI47_19055 at 40.278 kb on + strand, within IAI47_19055 at 40.279 kb on - strand, within IAI47_19055 at 40.294 kb on + strand, within IAI47_19055 at 40.294 kb on + strand, within IAI47_19055 at 40.295 kb on - strand, within IAI47_19055 at 40.295 kb on - strand, within IAI47_19055 at 40.308 kb on - strand, within IAI47_19055 at 40.361 kb on + strand, within IAI47_19055 at 40.361 kb on + strand, within IAI47_19055 at 40.361 kb on + strand, within IAI47_19055 at 40.362 kb on - strand, within IAI47_19055 at 40.362 kb on - strand, within IAI47_19055 at 40.362 kb on - strand, within IAI47_19055 at 40.362 kb on - strand, within IAI47_19055 at 40.362 kb on - strand, within IAI47_19055 at 40.369 kb on + strand, within IAI47_19055 at 40.370 kb on - strand, within IAI47_19055 at 40.370 kb on - strand, within IAI47_19055 at 40.394 kb on + strand, within IAI47_19055 at 40.394 kb on + strand, within IAI47_19055 at 40.394 kb on + strand, within IAI47_19055 at 40.394 kb on + strand, within IAI47_19055 at 40.394 kb on + strand, within IAI47_19055 at 40.394 kb on + strand, within IAI47_19055 at 40.394 kb on + strand, within IAI47_19055 at 40.395 kb on - strand, within IAI47_19055 at 40.395 kb on - strand, within IAI47_19055 at 40.395 kb on - strand, within IAI47_19055 at 40.395 kb on - strand, within IAI47_19055 at 40.395 kb on - strand, within IAI47_19055 at 40.395 kb on - strand, within IAI47_19055 at 40.395 kb on - strand, within IAI47_19055 at 40.395 kb on - strand, within IAI47_19055 at 40.414 kb on + strand, within IAI47_19055 at 40.414 kb on + strand, within IAI47_19055 at 40.414 kb on + strand, within IAI47_19055 at 40.414 kb on + strand, within IAI47_19055 at 40.415 kb on - strand, within IAI47_19055 at 40.418 kb on + strand, within IAI47_19055 at 40.418 kb on + strand, within IAI47_19055 at 40.418 kb on + strand, within IAI47_19055 at 40.418 kb on + strand, within IAI47_19055 at 40.419 kb on - strand, within IAI47_19055 at 40.419 kb on - strand, within IAI47_19055 at 40.439 kb on + strand, within IAI47_19055 at 40.439 kb on + strand, within IAI47_19055 at 40.440 kb on - strand, within IAI47_19055 at 40.440 kb on - strand, within IAI47_19055 at 40.440 kb on - strand, within IAI47_19055 at 40.440 kb on - strand, within IAI47_19055 at 40.473 kb on + strand, within IAI47_19055
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic remove 38,210 + +2.6 38,211 - +1.2 38,214 + +1.1 38,214 + -1.1 38,214 + -0.8 38,214 + +2.5 38,214 + -0.5 38,215 - +0.7 38,215 - +1.7 38,215 - -0.2 38,278 + IAI47_19040 0.18 -0.2 38,278 + IAI47_19040 0.18 -0.9 38,278 + IAI47_19040 0.18 +1.7 38,278 + IAI47_19040 0.18 -0.2 38,278 + IAI47_19040 0.18 +0.6 38,279 - IAI47_19040 0.18 +0.9 38,279 - IAI47_19040 0.18 +0.8 38,279 - IAI47_19040 0.18 -0.6 38,279 - IAI47_19040 0.18 -0.0 38,279 - IAI47_19040 0.18 +0.4 38,279 - IAI47_19040 0.18 +0.2 38,279 - IAI47_19040 0.18 -1.0 38,281 + IAI47_19040 0.19 +1.4 38,281 + IAI47_19040 0.19 +0.8 38,281 + IAI47_19040 0.19 +0.8 38,282 - IAI47_19040 0.19 +0.4 38,282 - IAI47_19040 0.19 +2.2 38,282 - IAI47_19040 0.19 +0.5 38,282 - IAI47_19040 0.19 -0.8 38,369 + IAI47_19040 0.49 +2.8 38,417 + IAI47_19040 0.65 -1.2 38,418 - IAI47_19040 0.66 -0.7 38,418 - IAI47_19040 0.66 +3.3 38,456 + IAI47_19040 0.79 +1.9 38,456 + IAI47_19040 0.79 -1.1 38,477 + IAI47_19040 0.86 -0.2 38,478 - IAI47_19040 0.86 +2.4 38,478 - IAI47_19040 0.86 -0.5 38,514 + -0.4 38,514 + +0.4 38,514 + +4.0 38,514 + +0.1 38,515 - -0.6 38,515 - +1.6 38,515 - +1.8 38,518 + -0.5 38,518 + +0.1 38,518 + -1.4 38,518 + -0.7 38,518 + +1.6 38,519 - +3.0 38,519 - +4.0 38,519 - +0.2 38,563 + +0.8 38,564 - -1.0 38,597 - -1.9 38,609 + +1.4 38,609 + -0.8 38,609 + +0.4 38,621 + +0.1 38,621 + +0.1 38,621 + +1.9 38,621 + -1.4 38,622 - +0.3 38,626 - +0.1 38,626 - +0.6 38,631 - +0.6 38,631 - -0.9 38,631 - +2.4 38,631 - -0.6 38,652 + +0.2 38,652 + +0.2 38,676 + +0.2 38,676 + -1.2 38,677 - -0.2 38,677 - +0.8 38,697 - -0.7 38,697 - -0.2 38,715 + +0.6 38,715 + -0.2 38,716 - -0.2 38,822 - IAI47_19045 0.44 -1.7 38,833 + IAI47_19045 0.48 +1.4 38,834 - IAI47_19045 0.49 -1.9 38,834 - IAI47_19045 0.49 +0.1 38,834 - IAI47_19045 0.49 -1.0 38,896 + IAI47_19045 0.74 +0.3 38,910 + IAI47_19045 0.80 -1.9 38,921 - IAI47_19045 0.84 -0.5 38,926 + IAI47_19045 0.86 -0.6 39,030 + -1.2 39,135 + -0.7 39,142 - +0.2 39,156 + -1.5 39,157 - -0.2 39,174 - -0.5 39,187 + -0.1 39,188 - +2.3 39,207 + +0.4 39,207 + +0.2 39,207 + -0.2 39,307 + IAI47_19050 0.34 +1.2 39,308 - IAI47_19050 0.35 -1.9 39,339 + IAI47_19050 0.45 -0.3 39,340 - IAI47_19050 0.46 +0.4 39,340 - IAI47_19050 0.46 -1.2 39,345 - IAI47_19050 0.47 -0.2 39,345 - IAI47_19050 0.47 +1.0 39,393 - IAI47_19050 0.64 -0.2 39,401 - IAI47_19050 0.66 +1.7 39,436 + IAI47_19050 0.78 +2.2 39,436 + IAI47_19050 0.78 -0.8 39,524 - -1.1 39,527 + +0.2 39,528 - +0.2 39,528 - -0.4 39,533 + -0.9 39,534 - -0.0 39,534 - +1.4 39,539 + -0.4 39,540 - +4.3 39,634 - +2.6 39,636 + -0.6 39,637 - +0.8 39,637 - +1.4 39,652 - +0.3 39,652 - +0.3 39,675 - -0.6 39,687 + -0.8 39,688 - +0.2 39,740 + -1.8 39,782 + +3.4 39,783 - +0.8 39,785 - +0.7 39,861 + +1.8 39,862 - -0.1 39,875 - -0.7 39,875 - +0.1 39,875 - -0.8 39,884 + -0.3 39,884 + -0.7 39,884 + +0.4 39,887 - -0.5 39,887 - -0.2 39,898 + +0.7 39,899 - +0.4 39,903 + -0.9 39,903 + +0.2 39,904 - -0.7 39,904 - +0.1 39,904 - -1.0 39,907 + -1.1 39,908 - +2.8 39,908 - +0.4 39,921 - -1.4 39,954 + -0.9 39,955 - -0.0 39,955 - +1.3 39,955 - -0.7 39,955 - +0.4 39,963 + +0.5 39,964 - +1.0 39,975 + -0.4 39,976 - +2.4 39,976 - +1.7 39,976 - +0.3 40,015 + +0.4 40,015 + -0.4 40,015 + +0.4 40,015 + -0.5 40,015 + -1.7 40,015 + +0.6 40,015 + +1.3 40,015 + +0.5 40,016 - -0.1 40,016 - +0.2 40,016 - -1.2 40,016 - -1.2 40,034 - -0.7 40,034 - -0.8 40,051 + IAI47_19055 0.12 -0.0 40,051 + IAI47_19055 0.12 -2.6 40,111 + IAI47_19055 0.18 -0.7 40,111 + IAI47_19055 0.18 -0.1 40,114 + IAI47_19055 0.19 -1.6 40,115 - IAI47_19055 0.19 -1.4 40,131 + IAI47_19055 0.20 -0.7 40,131 + IAI47_19055 0.20 +1.1 40,131 + IAI47_19055 0.20 -1.2 40,131 + IAI47_19055 0.20 +0.1 40,132 - IAI47_19055 0.21 -0.5 40,132 - IAI47_19055 0.21 -0.9 40,132 - IAI47_19055 0.21 -1.2 40,132 - IAI47_19055 0.21 -0.8 40,132 - IAI47_19055 0.21 +0.6 40,132 - IAI47_19055 0.21 -0.4 40,139 + IAI47_19055 0.21 +0.4 40,139 + IAI47_19055 0.21 -0.6 40,139 + IAI47_19055 0.21 -1.8 40,139 + IAI47_19055 0.21 +1.4 40,139 + IAI47_19055 0.21 -1.4 40,139 + IAI47_19055 0.21 +0.4 40,140 - IAI47_19055 0.21 -0.4 40,140 - IAI47_19055 0.21 +3.5 40,148 - IAI47_19055 0.22 +1.2 40,159 + IAI47_19055 0.23 +0.2 40,160 - IAI47_19055 0.24 +0.5 40,162 + IAI47_19055 0.24 +2.4 40,162 + IAI47_19055 0.24 -1.2 40,163 - IAI47_19055 0.24 +0.6 40,163 - IAI47_19055 0.24 -0.9 40,232 + IAI47_19055 0.31 +1.6 40,233 - IAI47_19055 0.32 -0.7 40,233 - IAI47_19055 0.32 -1.2 40,278 + IAI47_19055 0.37 -1.3 40,278 + IAI47_19055 0.37 -0.9 40,279 - IAI47_19055 0.37 +0.2 40,294 + IAI47_19055 0.38 -0.4 40,294 + IAI47_19055 0.38 -0.6 40,295 - IAI47_19055 0.38 +0.5 40,295 - IAI47_19055 0.38 +1.2 40,308 - IAI47_19055 0.40 +1.6 40,361 + IAI47_19055 0.46 -0.9 40,361 + IAI47_19055 0.46 +0.0 40,361 + IAI47_19055 0.46 +0.8 40,362 - IAI47_19055 0.46 +0.7 40,362 - IAI47_19055 0.46 +3.0 40,362 - IAI47_19055 0.46 +3.7 40,362 - IAI47_19055 0.46 -1.8 40,362 - IAI47_19055 0.46 +1.4 40,369 + IAI47_19055 0.46 -0.7 40,370 - IAI47_19055 0.47 +0.7 40,370 - IAI47_19055 0.47 +1.1 40,394 + IAI47_19055 0.49 -2.7 40,394 + IAI47_19055 0.49 -0.8 40,394 + IAI47_19055 0.49 -0.0 40,394 + IAI47_19055 0.49 -0.6 40,394 + IAI47_19055 0.49 +5.0 40,394 + IAI47_19055 0.49 +1.2 40,394 + IAI47_19055 0.49 +0.6 40,395 - IAI47_19055 0.49 +0.1 40,395 - IAI47_19055 0.49 +1.7 40,395 - IAI47_19055 0.49 -1.3 40,395 - IAI47_19055 0.49 -0.9 40,395 - IAI47_19055 0.49 -1.1 40,395 - IAI47_19055 0.49 -0.2 40,395 - IAI47_19055 0.49 +0.5 40,395 - IAI47_19055 0.49 -1.4 40,414 + IAI47_19055 0.51 -2.8 40,414 + IAI47_19055 0.51 -0.3 40,414 + IAI47_19055 0.51 +0.4 40,414 + IAI47_19055 0.51 -0.0 40,415 - IAI47_19055 0.51 +0.0 40,418 + IAI47_19055 0.52 -0.6 40,418 + IAI47_19055 0.52 +1.9 40,418 + IAI47_19055 0.52 -0.6 40,418 + IAI47_19055 0.52 +0.3 40,419 - IAI47_19055 0.52 -0.1 40,419 - IAI47_19055 0.52 +0.8 40,439 + IAI47_19055 0.54 +0.6 40,439 + IAI47_19055 0.54 -0.2 40,440 - IAI47_19055 0.54 +1.5 40,440 - IAI47_19055 0.54 +0.3 40,440 - IAI47_19055 0.54 +4.6 40,440 - IAI47_19055 0.54 -2.3 40,473 + IAI47_19055 0.58 -1.1
Or see this region's nucleotide sequence