Strain Fitness in Pantoea sp. MT58 around IAI47_18875

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
7,216	-		IAI47_18870	0.56	-0.5
7,223	+		IAI47_18870	0.57	-0.5
7,223	+		IAI47_18870	0.57	+0.5
7,223	+		IAI47_18870	0.57	-0.9
7,224	-		IAI47_18870	0.57	-0.5
7,249	-		IAI47_18870	0.59	-0.9
7,249	-		IAI47_18870	0.59	+0.9
7,270	+		IAI47_18870	0.60	-0.7
7,270	+		IAI47_18870	0.60	-0.7
7,271	-		IAI47_18870	0.60	-1.4
7,271	-		IAI47_18870	0.60	+2.9
7,271	-		IAI47_18870	0.60	+2.2
7,271	-		IAI47_18870	0.60	-0.3
7,271	-		IAI47_18870	0.60	+0.4
7,273	+		IAI47_18870	0.60	+0.5
7,273	+		IAI47_18870	0.60	+2.4
7,273	+		IAI47_18870	0.60	-1.0
7,273	+		IAI47_18870	0.60	-0.6
7,274	-		IAI47_18870	0.60	+0.1
7,274	-		IAI47_18870	0.60	+1.6
7,274	-		IAI47_18870	0.60	+0.7
7,274	-		IAI47_18870	0.60	-0.7
7,338	+		IAI47_18870	0.65	+1.8
7,339	-		IAI47_18870	0.65	+0.8
7,387	-		IAI47_18870	0.68	-0.1
7,387	-		IAI47_18870	0.68	-1.6
7,424	+		IAI47_18870	0.71	-1.0
7,424	+		IAI47_18870	0.71	-0.2
7,424	+		IAI47_18870	0.71	+1.0
7,473	+		IAI47_18870	0.74	+2.4
7,473	+		IAI47_18870	0.74	+0.8
7,473	+		IAI47_18870	0.74	-0.8
7,474	-		IAI47_18870	0.74	-1.4
7,474	-		IAI47_18870	0.74	+0.9
7,498	+		IAI47_18870	0.76	-0.3
7,499	-		IAI47_18870	0.76	+0.9
7,536	+		IAI47_18870	0.78	+1.2
7,537	-		IAI47_18870	0.79	-0.6
7,537	-		IAI47_18870	0.79	-0.1
7,561	+		IAI47_18870	0.80	-0.5
7,561	+		IAI47_18870	0.80	-0.0
7,607	+		IAI47_18870	0.83	+0.8
7,607	+		IAI47_18870	0.83	+1.2
7,610	+		IAI47_18870	0.84	-0.2
7,610	+		IAI47_18870	0.84	+0.8
7,631	+		IAI47_18870	0.85	-1.4
7,631	+		IAI47_18870	0.85	-0.4
7,632	-		IAI47_18870	0.85	+0.7
7,640	+		IAI47_18870	0.86	+0.3
7,640	+		IAI47_18870	0.86	-0.4
7,640	+		IAI47_18870	0.86	-0.8
7,640	+		IAI47_18870	0.86	-0.0
7,640	+		IAI47_18870	0.86	-0.8
7,641	-		IAI47_18870	0.86	+1.0
7,644	+		IAI47_18870	0.86	-0.3
7,644	+		IAI47_18870	0.86	-0.2
7,644	+		IAI47_18870	0.86	-0.8
7,644	+		IAI47_18870	0.86	-0.4
7,644	+		IAI47_18870	0.86	-0.4
7,645	-		IAI47_18870	0.86	+0.3
7,645	-		IAI47_18870	0.86	-0.6
7,645	-		IAI47_18870	0.86	-1.2
7,645	-		IAI47_18870	0.86	-2.0
7,645	-		IAI47_18870	0.86	+0.2
7,645	-		IAI47_18870	0.86	-0.2
7,645	-		IAI47_18870	0.86	+0.4
7,645	-		IAI47_18870	0.86	-0.6
7,677	+		IAI47_18870	0.88	+1.4
7,684	+		IAI47_18870	0.89	-0.2
7,684	+		IAI47_18870	0.89	-1.6
7,684	+		IAI47_18870	0.89	+0.1
7,684	+		IAI47_18870	0.89	-0.4
7,685	-		IAI47_18870	0.89	-0.5
7,707	+				+1.8
7,722	+				-0.7
7,723	-				+0.8
7,723	-				+0.0
7,736	+				+0.9
7,844	+				+1.6
7,844	+				-2.6
7,845	-				-0.9
7,846	+				+1.5
7,846	+				-0.2
7,846	+				+2.3
7,847	-				+0.2
7,847	-				-0.3
7,887	+				+4.3
7,895	+				+0.5
7,961	+				+1.2
7,962	-				+1.3
7,962	-				+0.7
7,962	-				-0.1
7,972	+				-1.9
7,983	-				+1.2
8,047	+				+1.6
8,048	-				-0.9
8,070	+				-0.7
8,070	+				+1.0
8,070	+				-0.2
8,071	-				-0.7
8,075	+				+1.5
8,075	+				-1.6
8,076	-				-0.9
8,076	-				-0.2
8,076	-				+0.6
8,076	-				-1.2
8,076	-				-0.5
8,076	-				+1.3
8,076	-				+0.8
8,084	+				+0.3
8,084	+				+0.5
8,115	-				+0.4
8,115	-				+0.5
8,117	-				+1.3
8,147	+				-1.3
8,147	+				+1.7
8,147	+				+1.6
8,147	+				-1.4
8,147	+				+0.7
8,147	+				-0.7
8,147	+				+0.8
8,148	-				+0.8
8,148	-				+2.6
8,148	-				+6.2
8,148	-				+0.3
8,148	-				-0.0
8,176	+				+1.6
8,176	+				+0.4
8,176	+				-0.3
8,176	+				+0.3
8,176	+				+0.0
8,176	+				+1.7
8,177	-				+0.8
8,177	-				+0.7
8,177	-				-0.2
8,201	-				-0.7
8,241	+				-1.4
8,241	+				+0.4
8,244	+				+0.1
8,244	+				-1.0
8,244	+				+1.0
8,245	-				-1.4
8,245	-				-0.5
8,250	+				-1.7
8,251	-				-1.8
8,251	-				+0.2
8,270	+				-0.8
8,270	+				+0.3
8,271	-				-0.1
8,271	-				+1.4
8,295	+				-1.5
8,357	+		IAI47_18875	0.12	+1.0
8,357	+		IAI47_18875	0.12	+0.4
8,357	+		IAI47_18875	0.12	-0.5
8,357	+		IAI47_18875	0.12	+1.2
8,357	+		IAI47_18875	0.12	-0.7
8,358	-		IAI47_18875	0.12	+0.3
8,358	-		IAI47_18875	0.12	+0.3
8,358	-		IAI47_18875	0.12	-0.4
8,358	-		IAI47_18875	0.12	-0.3
8,358	-		IAI47_18875	0.12	-1.4
8,358	-		IAI47_18875	0.12	+1.2
8,366	+		IAI47_18875	0.13	+1.3
8,367	-		IAI47_18875	0.13	+3.6
8,367	-		IAI47_18875	0.13	-1.2
8,393	-		IAI47_18875	0.14	+2.0
8,449	+		IAI47_18875	0.18	+3.5
8,456	+		IAI47_18875	0.19	+0.1
8,457	-		IAI47_18875	0.19	+0.4
8,457	-		IAI47_18875	0.19	+0.4
8,459	+		IAI47_18875	0.19	-0.1
8,460	-		IAI47_18875	0.19	-0.9
8,477	+		IAI47_18875	0.20	+0.4
8,477	+		IAI47_18875	0.20	+0.6
8,477	+		IAI47_18875	0.20	+0.0
8,477	+		IAI47_18875	0.20	-0.7
8,478	-		IAI47_18875	0.20	+0.5
8,478	-		IAI47_18875	0.20	+2.9
8,478	-		IAI47_18875	0.20	-1.2
8,478	-		IAI47_18875	0.20	+1.7
8,513	+		IAI47_18875	0.22	-0.6
8,514	-		IAI47_18875	0.22	-1.8
8,514	-		IAI47_18875	0.22	+1.6
8,514	-		IAI47_18875	0.22	+0.6
8,514	-		IAI47_18875	0.22	+0.2
8,514	-		IAI47_18875	0.22	+0.8
8,514	-		IAI47_18875	0.22	-1.8
8,515	+		IAI47_18875	0.23	-0.7
8,559	+		IAI47_18875	0.25	+0.7
8,560	-		IAI47_18875	0.26	-0.5
8,560	-		IAI47_18875	0.26	+0.7
8,560	-		IAI47_18875	0.26	+0.3
8,582	+		IAI47_18875	0.27	-0.9
8,582	+		IAI47_18875	0.27	-1.7
8,582	+		IAI47_18875	0.27	-0.0
8,582	+		IAI47_18875	0.27	+0.4
8,582	+		IAI47_18875	0.27	-0.1
8,583	-		IAI47_18875	0.27	-0.3
8,583	-		IAI47_18875	0.27	-0.6
8,585	-		IAI47_18875	0.27	-0.0
8,585	-		IAI47_18875	0.27	+0.6
8,590	-		IAI47_18875	0.28	-0.5
8,625	-		IAI47_18875	0.30	+1.5
8,641	-		IAI47_18875	0.31	+0.1
8,659	+		IAI47_18875	0.32	-0.5
8,659	+		IAI47_18875	0.32	+1.0
8,685	+		IAI47_18875	0.34	+2.4
8,685	+		IAI47_18875	0.34	+0.3
8,686	-		IAI47_18875	0.34	+0.2
8,859	+		IAI47_18875	0.45	-0.6
8,859	+		IAI47_18875	0.45	+0.9
8,859	+		IAI47_18875	0.45	+0.8
8,860	-		IAI47_18875	0.46	-0.3
8,860	-		IAI47_18875	0.46	-0.9
8,860	-		IAI47_18875	0.46	+1.0
8,860	-		IAI47_18875	0.46	+3.7
8,860	-		IAI47_18875	0.46	-0.2
8,860	-		IAI47_18875	0.46	-1.6
8,860	-		IAI47_18875	0.46	-0.4
8,860	-		IAI47_18875	0.46	+1.4
8,866	-		IAI47_18875	0.46	+0.4
8,883	+		IAI47_18875	0.47	+2.0
8,928	+		IAI47_18875	0.50	-0.4
8,986	+		IAI47_18875	0.54	+4.0
8,987	-		IAI47_18875	0.54	-0.9
8,987	-		IAI47_18875	0.54	-0.7
8,987	-		IAI47_18875	0.54	-0.5
8,990	+		IAI47_18875	0.54	+0.3
8,990	+		IAI47_18875	0.54	-0.4
8,991	-		IAI47_18875	0.54	-0.4
8,991	-		IAI47_18875	0.54	-1.7
8,991	-		IAI47_18875	0.54	+2.5
8,991	-		IAI47_18875	0.54	+2.2
8,992	+		IAI47_18875	0.54	-1.8
8,993	-		IAI47_18875	0.54	-0.6
8,993	-		IAI47_18875	0.54	-0.7
9,026	+		IAI47_18875	0.57	-0.2
9,027	-		IAI47_18875	0.57	+0.7
9,027	-		IAI47_18875	0.57	+1.7
9,076	+		IAI47_18875	0.60	-0.7
9,077	-		IAI47_18875	0.60	+0.6
9,130	+		IAI47_18875	0.64	+0.6
9,131	-		IAI47_18875	0.64	+1.6
9,131	-		IAI47_18875	0.64	+1.2
9,131	-		IAI47_18875	0.64	+1.0
9,131	-		IAI47_18875	0.64	+1.4
9,164	+		IAI47_18875	0.66	+1.3
9,164	+		IAI47_18875	0.66	+1.7
9,201	+		IAI47_18875	0.68	+0.7
9,202	-		IAI47_18875	0.68	+0.5
9,202	-		IAI47_18875	0.68	+2.8
9,237	+		IAI47_18875	0.71	+0.8
9,254	+		IAI47_18875	0.72	-0.7
9,255	-		IAI47_18875	0.72	-0.7
9,297	-		IAI47_18875	0.75	-0.0
9,310	+		IAI47_18875	0.76	+0.2
9,317	-		IAI47_18875	0.76	-0.3
9,317	-		IAI47_18875	0.76	-2.0
9,317	-		IAI47_18875	0.76	-1.4
9,317	-		IAI47_18875	0.76	+0.2
9,385	+		IAI47_18875	0.81	-1.6
9,385	+		IAI47_18875	0.81	+0.8
9,385	+		IAI47_18875	0.81	-0.5
9,386	-		IAI47_18875	0.81	+1.4
9,465	+		IAI47_18875	0.86	-0.2
9,465	+		IAI47_18875	0.86	-1.2
9,466	-		IAI47_18875	0.86	+0.6
9,466	-		IAI47_18875	0.86	-0.1
9,466	-		IAI47_18875	0.86	-0.3
9,466	-		IAI47_18875	0.86	-1.0
9,466	-		IAI47_18875	0.86	+2.1
9,466	-		IAI47_18875	0.86	-0.5
9,466	-		IAI47_18875	0.86	-1.2
9,466	-		IAI47_18875	0.86	+0.6
9,466	-		IAI47_18875	0.86	-0.5
9,467	+		IAI47_18875	0.86	+1.0
9,468	-		IAI47_18875	0.86	+0.7
9,468	-		IAI47_18875	0.86	-1.4
9,468	-		IAI47_18875	0.86	-0.8
9,468	-		IAI47_18875	0.86	-0.4
9,484	+		IAI47_18875	0.87	+2.2
9,485	-		IAI47_18875	0.87	-0.2
9,502	+		IAI47_18875	0.88	+0.8
9,526	-		IAI47_18875	0.90	-1.6
9,578	-				+2.4
9,578	-				-1.0
9,593	+				-1.6
9,594	-				-1.5
9,599	+				-0.5
9,599	+				-0.2
9,599	+				-0.3
9,599	+				+0.6
9,599	+				-0.1
9,599	+				+0.4
9,600	-				-0.3
9,600	-				-1.4
9,717	+				-0.0
9,717	+				-1.8
9,717	+				+0.6
9,717	+				+0.7
9,717	+				+3.1
9,717	+				+0.6
9,717	+				+1.1
9,717	+				+0.4
9,718	-				-0.2
9,718	-				-0.3
9,718	-				-1.8
9,806	-		IAI47_18880	0.11	-2.0
9,806	-		IAI47_18880	0.11	-0.6
9,823	+		IAI47_18880	0.13	-1.0
9,824	-		IAI47_18880	0.13	-0.3
9,824	-		IAI47_18880	0.13	-0.4
9,898	+		IAI47_18880	0.21	-0.6
9,898	+		IAI47_18880	0.21	+0.5
9,951	+		IAI47_18880	0.27	-1.8
9,951	+		IAI47_18880	0.27	+1.3
9,952	-		IAI47_18880	0.28	-0.0
9,952	-		IAI47_18880	0.28	-0.1
9,952	-		IAI47_18880	0.28	-0.4
10,012	+		IAI47_18880	0.35	+3.0
10,014	+		IAI47_18880	0.35	-0.3
10,014	+		IAI47_18880	0.35	-0.0
10,014	+		IAI47_18880	0.35	-3.1
10,014	+		IAI47_18880	0.35	-0.8
10,014	+		IAI47_18880	0.35	+1.0
10,014	+		IAI47_18880	0.35	+1.7
10,014	+		IAI47_18880	0.35	+1.9
10,015	-		IAI47_18880	0.35	+0.6
10,015	-		IAI47_18880	0.35	+0.5
10,015	-		IAI47_18880	0.35	+0.5
10,015	-		IAI47_18880	0.35	-0.9
10,015	-		IAI47_18880	0.35	-1.1
10,015	-		IAI47_18880	0.35	+3.9
10,015	-		IAI47_18880	0.35	-0.8
10,015	-		IAI47_18880	0.35	-0.1
10,015	-		IAI47_18880	0.35	-0.5
10,015	-		IAI47_18880	0.35	+3.3
10,018	+		IAI47_18880	0.35	+2.4
10,018	+		IAI47_18880	0.35	-0.6
10,018	+		IAI47_18880	0.35	+0.6
10,018	+		IAI47_18880	0.35	-1.2
10,018	+		IAI47_18880	0.35	-0.3
10,019	-		IAI47_18880	0.35	+1.7
10,019	-		IAI47_18880	0.35	-0.6
10,019	-		IAI47_18880	0.35	+0.1
10,019	-		IAI47_18880	0.35	+0.7
10,019	-		IAI47_18880	0.35	-1.4
10,019	-		IAI47_18880	0.35	+0.1
10,019	-		IAI47_18880	0.35	-0.5
10,118	+		IAI47_18880	0.47	-0.5
10,162	+		IAI47_18880	0.52	+0.8
10,162	+		IAI47_18880	0.52	-1.3
10,162	+		IAI47_18880	0.52	-0.3
10,183	+		IAI47_18880	0.55	+0.2
10,184	-		IAI47_18880	0.55	+2.6
10,184	-		IAI47_18880	0.55	+0.6
10,184	-		IAI47_18880	0.55	-0.4
10,234	+		IAI47_18880	0.61	+4.1
10,234	+		IAI47_18880	0.61	-1.5
10,311	-		IAI47_18880	0.70	-0.3
10,347	+		IAI47_18880	0.74	+0.5
10,348	-		IAI47_18880	0.74	+2.0
10,348	-		IAI47_18880	0.74	+2.2
10,364	+		IAI47_18880	0.76	+1.3
10,390	-		IAI47_18880	0.79	-1.0
10,408	+		IAI47_18880	0.81	-0.6
10,409	-		IAI47_18880	0.81	+0.4
10,448	+		IAI47_18880	0.86	-0.9
10,449	-		IAI47_18880	0.86	-0.4
10,449	-		IAI47_18880	0.86	-1.2
10,449	-		IAI47_18880	0.86	-0.4
10,449	-		IAI47_18880	0.86	+0.4
10,449	-		IAI47_18880	0.86	+1.7
10,497	-				+0.4
10,497	-				-1.7
10,513	-				-1.1
10,548	+				-0.6
10,548	+				+2.7
10,548	+				+1.2
10,549	-				-0.0
10,560	+				-0.7
10,561	+				+0.6
10,561	+				-0.3
10,562	-				-0.9
10,592	-				-1.5
10,592	-				+0.4
10,592	-				+0.4
10,602	+				-0.7
10,603	-				+0.4
10,613	+				+0.7
10,613	+				+1.6
10,626	-				-1.0
10,651	-				-0.0
10,651	-				+0.8