Strain Fitness in Pantoea sp. MT58 around IAI47_18215

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_18205 and IAI47_18210 are separated by 410 nucleotidesIAI47_18210 and IAI47_18215 are separated by 17 nucleotidesIAI47_18215 and IAI47_18220 are separated by 32 nucleotidesIAI47_18220 and IAI47_18225 overlap by 1 nucleotides IAI47_18205: IAI47_18205 - 16S ribosomal RNA, at 3,872,653 to 3,874,199 _18205 IAI47_18210: IAI47_18210 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 3,874,610 to 3,875,143 _18210 IAI47_18215: IAI47_18215 - Trk system potassium transporter TrkH, at 3,875,161 to 3,876,612 _18215 IAI47_18220: IAI47_18220 - IMPACT family protein, at 3,876,645 to 3,877,262 _18220 IAI47_18225: IAI47_18225 - Xaa-Pro dipeptidase, at 3,877,262 to 3,878,593 _18225 Position (kb) 3875 3876 3877Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3874.526 kb on + strandat 3874.526 kb on + strandat 3874.526 kb on + strandat 3874.528 kb on + strandat 3874.584 kb on - strandat 3874.612 kb on - strandat 3874.625 kb on + strandat 3874.625 kb on + strandat 3875.155 kb on + strandat 3875.156 kb on - strandat 3875.156 kb on - strandat 3875.156 kb on - strandat 3875.158 kb on + strandat 3875.158 kb on + strandat 3875.158 kb on + strandat 3875.158 kb on + strandat 3875.159 kb on - strandat 3875.159 kb on - strandat 3875.159 kb on - strandat 3875.159 kb on - strandat 3875.159 kb on - strandat 3875.159 kb on - strandat 3875.162 kb on + strandat 3875.162 kb on + strandat 3875.163 kb on - strandat 3875.178 kb on + strandat 3875.202 kb on + strandat 3875.403 kb on - strand, within IAI47_18215at 3875.467 kb on - strand, within IAI47_18215at 3875.833 kb on + strand, within IAI47_18215at 3876.097 kb on - strand, within IAI47_18215at 3876.587 kb on - strandat 3876.631 kb on - strandat 3876.631 kb on - strandat 3876.631 kb on - strandat 3876.631 kb on - strandat 3876.631 kb on - strandat 3876.634 kb on - strandat 3876.634 kb on - strandat 3876.634 kb on - strandat 3876.669 kb on + strandat 3876.724 kb on + strand, within IAI47_18220at 3876.725 kb on - strand, within IAI47_18220at 3876.725 kb on - strand, within IAI47_18220at 3876.725 kb on - strand, within IAI47_18220at 3876.729 kb on + strand, within IAI47_18220at 3876.729 kb on + strand, within IAI47_18220at 3876.730 kb on - strand, within IAI47_18220at 3876.730 kb on - strand, within IAI47_18220at 3876.730 kb on - strand, within IAI47_18220at 3876.730 kb on - strand, within IAI47_18220at 3876.795 kb on + strand, within IAI47_18220at 3876.795 kb on + strand, within IAI47_18220at 3876.795 kb on + strand, within IAI47_18220at 3876.796 kb on - strand, within IAI47_18220at 3876.826 kb on + strand, within IAI47_18220at 3876.827 kb on - strand, within IAI47_18220at 3876.884 kb on + strand, within IAI47_18220at 3876.884 kb on + strand, within IAI47_18220at 3876.884 kb on + strand, within IAI47_18220at 3876.884 kb on + strand, within IAI47_18220at 3876.884 kb on + strand, within IAI47_18220at 3876.885 kb on - strand, within IAI47_18220at 3876.885 kb on - strand, within IAI47_18220at 3876.885 kb on - strand, within IAI47_18220at 3876.885 kb on - strand, within IAI47_18220at 3876.885 kb on - strand, within IAI47_18220at 3876.885 kb on - strand, within IAI47_18220at 3876.885 kb on - strand, within IAI47_18220at 3876.910 kb on + strand, within IAI47_18220at 3876.910 kb on + strand, within IAI47_18220at 3876.910 kb on + strand, within IAI47_18220at 3876.910 kb on + strand, within IAI47_18220at 3876.911 kb on - strand, within IAI47_18220at 3876.921 kb on + strand, within IAI47_18220at 3876.921 kb on + strand, within IAI47_18220at 3876.922 kb on - strand, within IAI47_18220at 3876.922 kb on - strand, within IAI47_18220at 3876.952 kb on + strand, within IAI47_18220at 3876.952 kb on + strand, within IAI47_18220at 3876.953 kb on - strand, within IAI47_18220at 3876.955 kb on + strand, within IAI47_18220at 3876.956 kb on - strand, within IAI47_18220at 3876.956 kb on - strand, within IAI47_18220at 3876.956 kb on - strand, within IAI47_18220at 3876.974 kb on + strand, within IAI47_18220at 3876.974 kb on + strand, within IAI47_18220at 3876.975 kb on - strand, within IAI47_18220at 3876.986 kb on + strand, within IAI47_18220at 3876.987 kb on - strand, within IAI47_18220at 3877.028 kb on + strand, within IAI47_18220at 3877.028 kb on + strand, within IAI47_18220at 3877.191 kb on - strand, within IAI47_18220at 3877.191 kb on - strand, within IAI47_18220at 3877.247 kb on + strandat 3877.247 kb on + strandat 3877.322 kb on - strandat 3877.331 kb on - strandat 3877.344 kb on + strandat 3877.345 kb on - strandat 3877.364 kb on - strandat 3877.375 kb on + strandat 3877.375 kb on + strandat 3877.375 kb on + strandat 3877.376 kb on - strandat 3877.376 kb on - strandat 3877.376 kb on - strandat 3877.376 kb on - strandat 3877.415 kb on + strand, within IAI47_18225at 3877.416 kb on - strand, within IAI47_18225at 3877.416 kb on - strand, within IAI47_18225at 3877.426 kb on + strand, within IAI47_18225at 3877.426 kb on + strand, within IAI47_18225at 3877.426 kb on + strand, within IAI47_18225at 3877.426 kb on + strand, within IAI47_18225at 3877.427 kb on - strand, within IAI47_18225at 3877.427 kb on - strand, within IAI47_18225at 3877.427 kb on - strand, within IAI47_18225at 3877.429 kb on + strand, within IAI47_18225at 3877.429 kb on + strand, within IAI47_18225at 3877.429 kb on + strand, within IAI47_18225at 3877.429 kb on + strand, within IAI47_18225at 3877.429 kb on + strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.430 kb on - strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.431 kb on + strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.432 kb on - strand, within IAI47_18225at 3877.451 kb on + strand, within IAI47_18225at 3877.451 kb on + strand, within IAI47_18225at 3877.451 kb on + strand, within IAI47_18225at 3877.452 kb on - strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.454 kb on + strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.455 kb on - strand, within IAI47_18225at 3877.491 kb on + strand, within IAI47_18225at 3877.491 kb on + strand, within IAI47_18225at 3877.492 kb on - strand, within IAI47_18225at 3877.493 kb on - strand, within IAI47_18225at 3877.498 kb on - strand, within IAI47_18225at 3877.540 kb on + strand, within IAI47_18225at 3877.540 kb on + strand, within IAI47_18225at 3877.541 kb on - strand, within IAI47_18225at 3877.541 kb on - strand, within IAI47_18225at 3877.541 kb on - strand, within IAI47_18225at 3877.597 kb on + strand, within IAI47_18225at 3877.597 kb on + strand, within IAI47_18225at 3877.598 kb on - strand, within IAI47_18225at 3877.598 kb on - strand, within IAI47_18225at 3877.598 kb on - strand, within IAI47_18225at 3877.598 kb on - strand, within IAI47_18225at 3877.598 kb on - strand, within IAI47_18225

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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3,874,526 + -0.2
3,874,526 + +0.8
3,874,526 + +0.8
3,874,528 + +4.3
3,874,584 - +0.0
3,874,612 - -0.1
3,874,625 + -0.9
3,874,625 + +0.2
3,875,155 + -0.5
3,875,156 - -1.8
3,875,156 - -1.2
3,875,156 - -0.2
3,875,158 + -0.2
3,875,158 + -0.8
3,875,158 + +0.7
3,875,158 + +1.5
3,875,159 - -0.6
3,875,159 - -0.0
3,875,159 - +1.2
3,875,159 - -0.1
3,875,159 - -1.4
3,875,159 - +0.9
3,875,162 + -0.8
3,875,162 + -2.0
3,875,163 - -0.2
3,875,178 + +4.4
3,875,202 + -0.3
3,875,403 - IAI47_18215 0.17 -0.5
3,875,467 - IAI47_18215 0.21 -0.2
3,875,833 + IAI47_18215 0.46 -1.0
3,876,097 - IAI47_18215 0.64 +0.2
3,876,587 - +0.6
3,876,631 - -0.1
3,876,631 - +1.0
3,876,631 - +1.4
3,876,631 - +0.2
3,876,631 - -0.8
3,876,634 - -0.0
3,876,634 - -0.7
3,876,634 - +0.6
3,876,669 + +3.2
3,876,724 + IAI47_18220 0.13 -2.1
3,876,725 - IAI47_18220 0.13 +0.8
3,876,725 - IAI47_18220 0.13 +1.2
3,876,725 - IAI47_18220 0.13 +0.4
3,876,729 + IAI47_18220 0.14 +0.6
3,876,729 + IAI47_18220 0.14 +1.3
3,876,730 - IAI47_18220 0.14 -0.5
3,876,730 - IAI47_18220 0.14 -0.6
3,876,730 - IAI47_18220 0.14 -0.9
3,876,730 - IAI47_18220 0.14 +1.1
3,876,795 + IAI47_18220 0.24 -0.8
3,876,795 + IAI47_18220 0.24 -0.4
3,876,795 + IAI47_18220 0.24 +0.4
3,876,796 - IAI47_18220 0.24 -0.1
3,876,826 + IAI47_18220 0.29 +1.0
3,876,827 - IAI47_18220 0.29 -1.2
3,876,884 + IAI47_18220 0.39 -2.3
3,876,884 + IAI47_18220 0.39 +0.5
3,876,884 + IAI47_18220 0.39 +1.5
3,876,884 + IAI47_18220 0.39 -0.9
3,876,884 + IAI47_18220 0.39 +0.1
3,876,885 - IAI47_18220 0.39 +0.3
3,876,885 - IAI47_18220 0.39 -1.8
3,876,885 - IAI47_18220 0.39 -2.3
3,876,885 - IAI47_18220 0.39 -1.4
3,876,885 - IAI47_18220 0.39 +0.5
3,876,885 - IAI47_18220 0.39 -1.4
3,876,885 - IAI47_18220 0.39 +0.8
3,876,910 + IAI47_18220 0.43 +0.0
3,876,910 + IAI47_18220 0.43 +0.3
3,876,910 + IAI47_18220 0.43 -0.7
3,876,910 + IAI47_18220 0.43 -0.9
3,876,911 - IAI47_18220 0.43 -0.3
3,876,921 + IAI47_18220 0.45 +0.0
3,876,921 + IAI47_18220 0.45 -0.4
3,876,922 - IAI47_18220 0.45 -0.2
3,876,922 - IAI47_18220 0.45 -1.3
3,876,952 + IAI47_18220 0.50 -0.4
3,876,952 + IAI47_18220 0.50 -1.8
3,876,953 - IAI47_18220 0.50 -0.7
3,876,955 + IAI47_18220 0.50 +1.4
3,876,956 - IAI47_18220 0.50 -0.4
3,876,956 - IAI47_18220 0.50 -1.6
3,876,956 - IAI47_18220 0.50 -0.3
3,876,974 + IAI47_18220 0.53 -0.7
3,876,974 + IAI47_18220 0.53 -0.3
3,876,975 - IAI47_18220 0.53 +0.2
3,876,986 + IAI47_18220 0.55 +0.3
3,876,987 - IAI47_18220 0.55 +0.2
3,877,028 + IAI47_18220 0.62 +0.1
3,877,028 + IAI47_18220 0.62 -0.2
3,877,191 - IAI47_18220 0.88 -0.3
3,877,191 - IAI47_18220 0.88 -0.2
3,877,247 + -0.8
3,877,247 + +0.1
3,877,322 - -0.3
3,877,331 - -0.6
3,877,344 + +2.3
3,877,345 - +0.9
3,877,364 - +1.4
3,877,375 + +0.6
3,877,375 + -1.7
3,877,375 + -0.1
3,877,376 - -1.0
3,877,376 - -1.4
3,877,376 - +1.7
3,877,376 - -0.0
3,877,415 + IAI47_18225 0.11 +0.9
3,877,416 - IAI47_18225 0.12 +1.8
3,877,416 - IAI47_18225 0.12 +1.3
3,877,426 + IAI47_18225 0.12 -1.4
3,877,426 + IAI47_18225 0.12 +0.6
3,877,426 + IAI47_18225 0.12 -0.4
3,877,426 + IAI47_18225 0.12 -0.5
3,877,427 - IAI47_18225 0.12 +0.9
3,877,427 - IAI47_18225 0.12 -0.1
3,877,427 - IAI47_18225 0.12 +0.7
3,877,429 + IAI47_18225 0.13 -0.9
3,877,429 + IAI47_18225 0.13 +0.5
3,877,429 + IAI47_18225 0.13 -1.1
3,877,429 + IAI47_18225 0.13 +0.5
3,877,429 + IAI47_18225 0.13 -1.0
3,877,430 - IAI47_18225 0.13 -0.0
3,877,430 - IAI47_18225 0.13 -0.2
3,877,430 - IAI47_18225 0.13 -0.2
3,877,430 - IAI47_18225 0.13 +0.5
3,877,430 - IAI47_18225 0.13 +0.7
3,877,430 - IAI47_18225 0.13 +0.4
3,877,430 - IAI47_18225 0.13 +0.5
3,877,430 - IAI47_18225 0.13 +0.8
3,877,430 - IAI47_18225 0.13 -0.3
3,877,431 + IAI47_18225 0.13 -0.3
3,877,431 + IAI47_18225 0.13 -1.3
3,877,431 + IAI47_18225 0.13 -0.3
3,877,431 + IAI47_18225 0.13 -0.7
3,877,431 + IAI47_18225 0.13 +1.4
3,877,431 + IAI47_18225 0.13 -1.8
3,877,431 + IAI47_18225 0.13 +0.4
3,877,431 + IAI47_18225 0.13 +0.1
3,877,431 + IAI47_18225 0.13 +0.4
3,877,431 + IAI47_18225 0.13 -1.4
3,877,431 + IAI47_18225 0.13 -0.9
3,877,431 + IAI47_18225 0.13 -0.2
3,877,431 + IAI47_18225 0.13 +0.3
3,877,431 + IAI47_18225 0.13 -1.4
3,877,432 - IAI47_18225 0.13 -0.8
3,877,432 - IAI47_18225 0.13 +0.4
3,877,432 - IAI47_18225 0.13 +2.7
3,877,432 - IAI47_18225 0.13 +0.1
3,877,432 - IAI47_18225 0.13 -3.4
3,877,432 - IAI47_18225 0.13 +1.4
3,877,432 - IAI47_18225 0.13 -0.1
3,877,432 - IAI47_18225 0.13 -0.5
3,877,432 - IAI47_18225 0.13 +1.2
3,877,432 - IAI47_18225 0.13 -0.4
3,877,432 - IAI47_18225 0.13 -0.0
3,877,451 + IAI47_18225 0.14 +0.0
3,877,451 + IAI47_18225 0.14 -0.3
3,877,451 + IAI47_18225 0.14 +0.4
3,877,452 - IAI47_18225 0.14 +0.6
3,877,454 + IAI47_18225 0.14 +0.5
3,877,454 + IAI47_18225 0.14 +1.0
3,877,454 + IAI47_18225 0.14 +0.2
3,877,454 + IAI47_18225 0.14 +1.7
3,877,454 + IAI47_18225 0.14 -0.2
3,877,454 + IAI47_18225 0.14 +0.5
3,877,454 + IAI47_18225 0.14 -1.1
3,877,454 + IAI47_18225 0.14 -0.9
3,877,454 + IAI47_18225 0.14 +0.4
3,877,454 + IAI47_18225 0.14 +1.0
3,877,455 - IAI47_18225 0.14 -1.6
3,877,455 - IAI47_18225 0.14 +0.0
3,877,455 - IAI47_18225 0.14 +0.6
3,877,455 - IAI47_18225 0.14 +1.4
3,877,455 - IAI47_18225 0.14 -0.5
3,877,455 - IAI47_18225 0.14 -0.1
3,877,455 - IAI47_18225 0.14 +0.5
3,877,455 - IAI47_18225 0.14 +0.9
3,877,455 - IAI47_18225 0.14 +0.3
3,877,455 - IAI47_18225 0.14 +0.3
3,877,491 + IAI47_18225 0.17 -0.7
3,877,491 + IAI47_18225 0.17 -2.4
3,877,492 - IAI47_18225 0.17 +2.7
3,877,493 - IAI47_18225 0.17 -0.8
3,877,498 - IAI47_18225 0.18 +0.0
3,877,540 + IAI47_18225 0.21 -0.5
3,877,540 + IAI47_18225 0.21 -2.3
3,877,541 - IAI47_18225 0.21 -0.9
3,877,541 - IAI47_18225 0.21 -0.6
3,877,541 - IAI47_18225 0.21 +1.1
3,877,597 + IAI47_18225 0.25 -0.7
3,877,597 + IAI47_18225 0.25 -1.0
3,877,598 - IAI47_18225 0.25 -0.7
3,877,598 - IAI47_18225 0.25 -0.9
3,877,598 - IAI47_18225 0.25 -0.6
3,877,598 - IAI47_18225 0.25 -0.9
3,877,598 - IAI47_18225 0.25 +1.8

Or see this region's nucleotide sequence