Strain Fitness in Pantoea sp. MT58 around IAI47_13005

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
2,749,695	+		IAI47_12995	0.75	-0.9
2,749,695	+		IAI47_12995	0.75	+3.6
2,749,695	+		IAI47_12995	0.75	+1.1
2,749,696	-		IAI47_12995	0.75	+0.6
2,749,696	-		IAI47_12995	0.75	-0.0
2,749,764	+		IAI47_12995	0.84	-1.4
2,749,764	+		IAI47_12995	0.84	+0.3
2,749,764	+		IAI47_12995	0.84	-0.1
2,749,765	-		IAI47_12995	0.84	-1.7
2,749,765	-		IAI47_12995	0.84	+4.9
2,749,786	+		IAI47_12995	0.87	+2.0
2,749,786	+		IAI47_12995	0.87	+1.0
2,749,786	+		IAI47_12995	0.87	-0.8
2,749,787	-		IAI47_12995	0.87	-0.4
2,749,787	-		IAI47_12995	0.87	+0.4
2,749,787	-		IAI47_12995	0.87	+1.5
2,749,787	-		IAI47_12995	0.87	-1.3
2,749,787	-		IAI47_12995	0.87	-1.1
2,749,833	+				+1.6
2,749,834	-				-0.6
2,749,865	-				-0.3
2,749,876	+				+0.0
2,749,876	+				-1.0
2,749,876	+				+0.3
2,749,877	-				+1.6
2,749,907	+				-1.6
2,749,907	+				-0.5
2,749,984	+		IAI47_13000	0.12	-1.8
2,749,985	-		IAI47_13000	0.12	+0.5
2,749,985	-		IAI47_13000	0.12	+4.4
2,749,999	+		IAI47_13000	0.14	+2.2
2,749,999	+		IAI47_13000	0.14	-1.2
2,749,999	+		IAI47_13000	0.14	+0.7
2,749,999	+		IAI47_13000	0.14	+1.7
2,750,000	-		IAI47_13000	0.14	-0.3
2,750,000	-		IAI47_13000	0.14	+5.5
2,750,000	-		IAI47_13000	0.14	-2.1
2,750,000	-		IAI47_13000	0.14	+3.0
2,750,000	-		IAI47_13000	0.14	-1.6
2,750,000	-		IAI47_13000	0.14	-0.5
2,750,000	-		IAI47_13000	0.14	+1.3
2,750,000	-		IAI47_13000	0.14	+0.4
2,750,013	+		IAI47_13000	0.16	+0.7
2,750,014	-		IAI47_13000	0.16	-1.1
2,750,014	-		IAI47_13000	0.16	-0.3
2,750,014	-		IAI47_13000	0.16	+0.2
2,750,014	-		IAI47_13000	0.16	-1.8
2,750,058	+		IAI47_13000	0.22	-2.0
2,750,058	+		IAI47_13000	0.22	+0.6
2,750,058	+		IAI47_13000	0.22	-1.4
2,750,058	+		IAI47_13000	0.22	+0.2
2,750,058	+		IAI47_13000	0.22	+0.4
2,750,059	-		IAI47_13000	0.23	+0.4
2,750,059	-		IAI47_13000	0.23	-1.6
2,750,158	+		IAI47_13000	0.36	-0.4
2,750,160	+		IAI47_13000	0.36	-0.2
2,750,203	+		IAI47_13000	0.42	+0.6
2,750,203	+		IAI47_13000	0.42	+0.7
2,750,203	+		IAI47_13000	0.42	-1.2
2,750,203	+		IAI47_13000	0.42	+0.7
2,750,203	+		IAI47_13000	0.42	+1.4
2,750,203	+		IAI47_13000	0.42	+0.9
2,750,203	+		IAI47_13000	0.42	+0.3
2,750,204	-		IAI47_13000	0.42	+1.6
2,750,204	-		IAI47_13000	0.42	-3.3
2,750,204	-		IAI47_13000	0.42	-1.1
2,750,206	+		IAI47_13000	0.43	-0.6
2,750,207	-		IAI47_13000	0.43	-0.3
2,750,241	+		IAI47_13000	0.47	-0.9
2,750,241	+		IAI47_13000	0.47	-0.5
2,750,242	-		IAI47_13000	0.48	+0.6
2,750,242	-		IAI47_13000	0.48	-0.7
2,750,311	+		IAI47_13000	0.57	-0.0
2,750,311	+		IAI47_13000	0.57	+0.4
2,750,311	+		IAI47_13000	0.57	+0.4
2,750,311	+		IAI47_13000	0.57	-0.0
2,750,312	-		IAI47_13000	0.57	-0.2
2,750,312	-		IAI47_13000	0.57	-1.0
2,750,359	+		IAI47_13000	0.64	+0.4
2,750,360	-		IAI47_13000	0.64	+1.1
2,750,360	-		IAI47_13000	0.64	-0.3
2,750,406	-		IAI47_13000	0.70	-0.2
2,750,473	-		IAI47_13000	0.79	+0.6
2,750,479	-		IAI47_13000	0.80	+1.3
2,750,484	+		IAI47_13000	0.81	+1.8
2,750,484	+		IAI47_13000	0.81	-0.6
2,750,484	+		IAI47_13000	0.81	+1.1
2,750,484	+		IAI47_13000	0.81	-1.6
2,750,484	+		IAI47_13000	0.81	+1.0
2,750,484	+		IAI47_13000	0.81	+2.9
2,750,485	-		IAI47_13000	0.81	+2.4
2,750,485	-		IAI47_13000	0.81	+0.1
2,750,485	-		IAI47_13000	0.81	-0.0
2,750,492	-		IAI47_13000	0.82	+0.8
2,750,492	-		IAI47_13000	0.82	-0.6
2,750,492	-		IAI47_13000	0.82	+0.6
2,750,499	+		IAI47_13000	0.83	-1.3
2,750,512	-		IAI47_13000	0.84	-0.3
2,750,530	-		IAI47_13000	0.87	+1.9
2,750,530	-		IAI47_13000	0.87	-0.9
2,750,569	-				-1.6
2,750,587	-				+0.6
2,750,590	+				+1.2
2,750,590	+				-0.3
2,750,590	+				-0.0
2,750,591	-				-0.4
2,750,591	-				-0.8
2,750,591	-				+1.8
2,750,591	-				+3.0
2,750,602	+				+0.9
2,750,602	+				-0.5
2,750,602	+				+4.0
2,750,603	-				-0.3
2,750,603	-				+0.3
2,750,623	+				-1.7
2,750,623	+				+1.1
2,750,623	+				-0.3
2,750,624	-				+1.1
2,750,826	+		IAI47_13005	0.27	+1.1
2,750,827	-		IAI47_13005	0.27	+0.1
2,750,827	-		IAI47_13005	0.27	+0.7
2,750,827	-		IAI47_13005	0.27	-1.1
2,750,827	-		IAI47_13005	0.27	+2.4
2,750,827	-		IAI47_13005	0.27	-0.6
2,750,830	+		IAI47_13005	0.28	-1.0
2,750,895	+		IAI47_13005	0.37	+0.7
2,750,895	+		IAI47_13005	0.37	-1.8
2,750,896	-		IAI47_13005	0.37	+0.9
2,750,896	-		IAI47_13005	0.37	-0.3
2,750,896	-		IAI47_13005	0.37	+0.6
2,750,896	-		IAI47_13005	0.37	+0.7
2,750,974	+		IAI47_13005	0.48	-0.8
2,750,974	+		IAI47_13005	0.48	+2.4
2,750,974	+		IAI47_13005	0.48	+0.1
2,751,012	+		IAI47_13005	0.53	+0.0
2,751,012	+		IAI47_13005	0.53	-1.8
2,751,013	-		IAI47_13005	0.53	+1.4
2,751,090	+		IAI47_13005	0.64	+2.4
2,751,091	-		IAI47_13005	0.64	+1.6
2,751,091	-		IAI47_13005	0.64	-1.4
2,751,149	+		IAI47_13005	0.72	-1.3
2,751,150	-		IAI47_13005	0.72	+0.1
2,751,156	+		IAI47_13005	0.73	-0.3
2,751,210	+		IAI47_13005	0.81	+0.4
2,751,210	+		IAI47_13005	0.81	-1.0
2,751,210	+		IAI47_13005	0.81	+3.5
2,751,210	+		IAI47_13005	0.81	+0.3
2,751,211	-		IAI47_13005	0.81	+6.1
2,751,211	-		IAI47_13005	0.81	+1.3
2,751,211	-		IAI47_13005	0.81	+0.1
2,751,211	-		IAI47_13005	0.81	-0.6
2,751,211	-		IAI47_13005	0.81	-0.0
2,751,217	-		IAI47_13005	0.82	-0.0
2,751,237	+		IAI47_13005	0.84	-0.6
2,751,238	-		IAI47_13005	0.85	+0.2
2,751,266	-		IAI47_13005	0.88	+0.9
2,751,276	+		IAI47_13005	0.90	-1.1
2,751,276	+		IAI47_13005	0.90	+3.5
2,751,276	+		IAI47_13005	0.90	+0.2
2,751,276	+		IAI47_13005	0.90	-0.8
2,751,277	-				+0.1
2,751,277	-				-0.3
2,751,277	-				+0.0
2,751,277	-				+4.1
2,751,277	-				-0.3
2,751,357	+				-0.9
2,751,357	+				-0.0
2,751,358	-				-1.8
2,751,358	-				+1.4
2,751,479	+		IAI47_13010	0.20	-0.5
2,751,480	-		IAI47_13010	0.20	-0.3
2,751,480	-		IAI47_13010	0.20	-1.5
2,751,500	+		IAI47_13010	0.23	+0.2
2,751,501	-		IAI47_13010	0.23	+1.4
2,751,501	-		IAI47_13010	0.23	-0.9
2,751,501	-		IAI47_13010	0.23	-2.7
2,751,549	+		IAI47_13010	0.30	+3.0
2,751,549	+		IAI47_13010	0.30	-0.7
2,751,549	+		IAI47_13010	0.30	-0.1
2,751,549	+		IAI47_13010	0.30	-1.1
2,751,549	+		IAI47_13010	0.30	+0.6
2,751,550	-		IAI47_13010	0.30	+1.8
2,751,550	-		IAI47_13010	0.30	+0.4
2,751,552	+		IAI47_13010	0.30	-1.4
2,751,553	-		IAI47_13010	0.31	-0.0
2,751,660	+		IAI47_13010	0.47	-1.0
2,751,661	-		IAI47_13010	0.47	+0.7
2,751,661	-		IAI47_13010	0.47	+0.0
2,751,661	-		IAI47_13010	0.47	-0.7
2,751,679	-		IAI47_13010	0.49	+1.3
2,751,771	+		IAI47_13010	0.63	-1.1
2,751,771	+		IAI47_13010	0.63	-2.1
2,751,771	+		IAI47_13010	0.63	+1.1
2,751,772	-		IAI47_13010	0.63	-1.1
2,751,780	-		IAI47_13010	0.65	+0.6
2,751,780	-		IAI47_13010	0.65	+0.2
2,751,798	+		IAI47_13010	0.67	+0.9
2,751,798	+		IAI47_13010	0.67	-0.6
2,751,799	-		IAI47_13010	0.67	-1.0
2,751,799	-		IAI47_13010	0.67	+0.7
2,751,799	-		IAI47_13010	0.67	-0.8
2,751,799	-		IAI47_13010	0.67	-0.6
2,751,824	+		IAI47_13010	0.71	-0.1
2,751,825	-		IAI47_13010	0.71	-0.5
2,751,843	+		IAI47_13010	0.74	-2.9
2,751,843	+		IAI47_13010	0.74	+0.1
2,751,843	+		IAI47_13010	0.74	+0.1
2,751,843	+		IAI47_13010	0.74	+0.3
2,751,888	+		IAI47_13010	0.81	+0.3
2,751,889	-		IAI47_13010	0.81	+1.2
2,751,900	+		IAI47_13010	0.83	+0.6
2,751,900	+		IAI47_13010	0.83	+1.0
2,751,900	+		IAI47_13010	0.83	-0.9
2,751,900	+		IAI47_13010	0.83	-1.1
2,751,900	+		IAI47_13010	0.83	-1.6
2,751,901	-		IAI47_13010	0.83	-0.2
2,751,901	-		IAI47_13010	0.83	+0.0
2,751,901	-		IAI47_13010	0.83	-0.1
2,751,901	-		IAI47_13010	0.83	-1.0
2,751,901	-		IAI47_13010	0.83	-0.4
2,751,910	-		IAI47_13010	0.84	+0.3
2,751,915	+		IAI47_13010	0.85	-0.7
2,751,916	-		IAI47_13010	0.85	-1.0
2,751,916	-		IAI47_13010	0.85	-2.0
2,751,916	-		IAI47_13010	0.85	+0.6
2,751,916	-		IAI47_13010	0.85	-0.3
2,751,936	+		IAI47_13010	0.88	+0.1
2,751,956	-				-1.5
2,752,010	+				-0.1
2,752,062	-				+1.8
2,752,092	+				+0.6
2,752,092	+				-2.3
2,752,092	+				+0.4
2,752,092	+				-0.1
2,752,093	-				-1.2
2,752,128	+				-0.5
2,752,146	+				+0.3
2,752,147	-				-0.3
2,752,170	+				+0.0
2,752,170	+				-0.3
2,752,170	+				-0.5
2,752,171	-				-1.5
2,752,171	-				-0.8
2,752,171	-				+0.7
2,752,171	-				-0.7
2,752,222	+		IAI47_13015	0.12	-1.1
2,752,222	+		IAI47_13015	0.12	-0.4
2,752,222	+		IAI47_13015	0.12	-0.4
2,752,222	+		IAI47_13015	0.12	+0.4
2,752,222	+		IAI47_13015	0.12	-0.7
2,752,223	-		IAI47_13015	0.12	-0.5
2,752,223	-		IAI47_13015	0.12	-0.5
2,752,223	-		IAI47_13015	0.12	-0.7
2,752,223	-		IAI47_13015	0.12	-0.5
2,752,254	+		IAI47_13015	0.17	-0.4
2,752,255	-		IAI47_13015	0.17	-2.3
2,752,255	-		IAI47_13015	0.17	-0.5
2,752,323	+		IAI47_13015	0.26	-0.5
2,752,324	-		IAI47_13015	0.26	+0.9