Strain Fitness in Pantoea sp. MT58 around IAI47_11390

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
2,407,962	-		IAI47_11385	0.78	-1.9
2,407,962	-		IAI47_11385	0.78	-0.3
2,407,963	+		IAI47_11385	0.78	+2.2
2,407,964	-		IAI47_11385	0.78	-0.8
2,407,964	-		IAI47_11385	0.78	-0.4
2,407,964	-		IAI47_11385	0.78	+0.4
2,407,964	-		IAI47_11385	0.78	-1.0
2,407,964	-		IAI47_11385	0.78	-1.9
2,407,980	-		IAI47_11385	0.78	+2.5
2,408,105	+		IAI47_11385	0.81	-0.7
2,408,275	+		IAI47_11385	0.85	+1.1
2,408,283	+		IAI47_11385	0.85	-1.3
2,408,283	+		IAI47_11385	0.85	-1.2
2,408,283	+		IAI47_11385	0.85	+0.5
2,408,283	+		IAI47_11385	0.85	+0.7
2,408,283	+		IAI47_11385	0.85	-0.9
2,408,283	+		IAI47_11385	0.85	-0.0
2,408,284	-		IAI47_11385	0.85	+1.7
2,408,284	-		IAI47_11385	0.85	-2.4
2,408,284	-		IAI47_11385	0.85	-1.3
2,408,284	-		IAI47_11385	0.85	+0.3
2,408,306	+		IAI47_11385	0.86	-0.3
2,408,307	-		IAI47_11385	0.86	-1.5
2,408,340	-		IAI47_11385	0.86	+1.6
2,408,368	+		IAI47_11385	0.87	-1.3
2,408,368	+		IAI47_11385	0.87	+0.7
2,408,369	-		IAI47_11385	0.87	+0.8
2,408,369	-		IAI47_11385	0.87	+0.4
2,408,447	+		IAI47_11385	0.89	+0.4
2,408,447	-		IAI47_11385	0.89	-0.2
2,408,448	-		IAI47_11385	0.89	-0.3
2,408,448	-		IAI47_11385	0.89	+0.1
2,408,448	-		IAI47_11385	0.89	-2.3
2,408,448	-		IAI47_11385	0.89	-0.3
2,408,448	-		IAI47_11385	0.89	-0.8
2,408,503	+				-0.3
2,408,583	+				-0.2
2,408,595	+				-0.2
2,408,595	+				-1.4
2,408,595	+				-0.8
2,408,596	-				-0.6
2,408,596	-				+2.5
2,408,596	-				+0.1
2,408,596	-				-1.3
2,408,599	+				-1.1
2,408,600	-				+4.3
2,408,600	-				-0.8
2,408,649	+				-0.9
2,408,649	+				-1.2
2,408,650	-				-1.8
2,408,650	-				-0.9
2,408,650	-				+0.1
2,408,715	+				-1.1
2,408,715	+				-0.8
2,408,716	-				+0.9
2,408,716	-				-1.0
2,408,716	-				-0.7
2,408,751	-				+1.4
2,408,845	+				-0.5
2,408,846	-				+0.5
2,408,846	-				+0.3
2,408,936	+				-1.4
2,408,936	+				-1.1
2,408,936	+				-3.1
2,408,937	-				+1.0
2,408,937	-				+0.3
2,408,937	-				-0.3
2,408,937	-				-2.4
2,408,937	-				-0.7
2,408,937	-				+0.0
2,408,941	+				-0.4
2,408,941	+				+2.0
2,408,941	+				+0.2
2,408,942	-				-0.9
2,408,942	-				+1.1
2,408,978	+				+0.2
2,408,978	+				-2.1
2,408,979	-				-0.3
2,408,979	-				-0.7
2,409,046	-		IAI47_11390	0.24	+0.7
2,409,116	+		IAI47_11390	0.40	-0.4
2,409,117	-		IAI47_11390	0.40	+0.7
2,409,117	-		IAI47_11390	0.40	-0.9
2,409,138	+		IAI47_11390	0.45	+0.7
2,409,138	+		IAI47_11390	0.45	+0.6
2,409,139	-		IAI47_11390	0.45	-1.3
2,409,139	-		IAI47_11390	0.45	-2.0
2,409,146	+		IAI47_11390	0.47	-0.3
2,409,146	+		IAI47_11390	0.47	+0.1
2,409,146	+		IAI47_11390	0.47	+0.1
2,409,146	+		IAI47_11390	0.47	-0.2
2,409,147	-		IAI47_11390	0.47	-0.0
2,409,147	-		IAI47_11390	0.47	+0.7
2,409,147	-		IAI47_11390	0.47	-0.3
2,409,150	+		IAI47_11390	0.48	-0.8
2,409,150	+		IAI47_11390	0.48	-0.9
2,409,151	-		IAI47_11390	0.48	-0.1
2,409,151	-		IAI47_11390	0.48	+2.4
2,409,151	-		IAI47_11390	0.48	-0.6
2,409,151	-		IAI47_11390	0.48	+0.2
2,409,151	-		IAI47_11390	0.48	-1.1
2,409,169	-		IAI47_11390	0.52	+1.4
2,409,260	+		IAI47_11390	0.73	+1.3
2,409,260	+		IAI47_11390	0.73	-1.9
2,409,273	+		IAI47_11390	0.76	+0.4
2,409,273	+		IAI47_11390	0.76	-0.5
2,409,274	-		IAI47_11390	0.76	-1.2
2,409,311	+		IAI47_11390	0.84	-0.6
2,409,311	+		IAI47_11390	0.84	-0.8
2,409,373	+				+0.7
2,409,374	-				-0.9
2,409,380	+				-2.2
2,409,384	-				+0.1
2,409,418	+				-0.2
2,409,419	-				+0.4
2,409,421	+				+0.3
2,409,539	+		IAI47_11395	0.28	-1.7
2,409,539	+		IAI47_11395	0.28	-0.3
2,409,540	-		IAI47_11395	0.28	-0.0
2,409,540	-		IAI47_11395	0.28	-1.0
2,409,540	-		IAI47_11395	0.28	+5.3
2,409,552	-		IAI47_11395	0.31	-0.9
2,409,572	+		IAI47_11395	0.37	-0.1
2,409,572	+		IAI47_11395	0.37	+0.0
2,409,573	-		IAI47_11395	0.37	+0.7
2,409,573	-		IAI47_11395	0.37	+0.4
2,409,579	-		IAI47_11395	0.39	+1.5
2,409,579	-		IAI47_11395	0.39	+0.5
2,409,579	-		IAI47_11395	0.39	+0.2
2,409,579	-		IAI47_11395	0.39	-1.7
2,409,580	+		IAI47_11395	0.39	-1.2
2,409,581	-		IAI47_11395	0.39	-0.0
2,409,674	+		IAI47_11395	0.65	-1.9
2,409,675	-		IAI47_11395	0.65	-1.2
2,409,681	+		IAI47_11395	0.67	-0.1
2,409,681	+		IAI47_11395	0.67	-0.2
2,409,682	-		IAI47_11395	0.67	-1.3
2,409,682	-		IAI47_11395	0.67	+2.7
2,409,687	+		IAI47_11395	0.68	-1.2
2,409,687	+		IAI47_11395	0.68	-1.5
2,409,688	-		IAI47_11395	0.69	-0.7
2,409,688	-		IAI47_11395	0.69	-0.9
2,409,744	+		IAI47_11395	0.84	-0.5
2,409,745	-		IAI47_11395	0.84	+0.8
2,409,782	-				-0.3
2,409,801	+				+0.6
2,409,801	+				-1.4
2,409,805	+				+0.3
2,409,806	-				+0.7
2,409,806	-				+0.0
2,409,843	+				-2.4
2,409,844	-				+0.6
2,409,844	-				-0.8
2,409,851	-				+0.0
2,409,851	-				-0.1
2,409,870	+				-0.7
2,409,914	+				-1.5
2,409,915	-				-0.0
2,409,917	+				-0.9
2,409,917	+				-0.6
2,409,918	-				+0.3
2,409,974	-		IAI47_11400	0.15	+0.9
2,409,976	+		IAI47_11400	0.16	+1.0
2,409,976	+		IAI47_11400	0.16	+1.3
2,409,977	-		IAI47_11400	0.16	-1.5
2,409,978	+		IAI47_11400	0.16	-2.8
2,409,978	+		IAI47_11400	0.16	-0.9
2,409,978	+		IAI47_11400	0.16	-0.1
2,410,021	+		IAI47_11400	0.24	+0.2
2,410,021	+		IAI47_11400	0.24	-0.2
2,410,022	-		IAI47_11400	0.24	+0.1
2,410,022	-		IAI47_11400	0.24	-1.3
2,410,022	-		IAI47_11400	0.24	-1.7
2,410,025	+		IAI47_11400	0.24	-1.4
2,410,025	+		IAI47_11400	0.24	+0.0
2,410,026	-		IAI47_11400	0.25	-0.6
2,410,109	+		IAI47_11400	0.39	-0.5
2,410,109	+		IAI47_11400	0.39	-1.3
2,410,110	-		IAI47_11400	0.40	-1.2
2,410,110	-		IAI47_11400	0.40	+0.7
2,410,110	-		IAI47_11400	0.40	-1.3
2,410,114	+		IAI47_11400	0.40	-2.8
2,410,114	+		IAI47_11400	0.40	-2.6
2,410,114	+		IAI47_11400	0.40	+0.9
2,410,114	+		IAI47_11400	0.40	-0.8
2,410,115	-		IAI47_11400	0.40	-0.7
2,410,115	-		IAI47_11400	0.40	+0.4
2,410,115	-		IAI47_11400	0.40	-2.2
2,410,162	+		IAI47_11400	0.49	+1.5
2,410,163	-		IAI47_11400	0.49	-0.7
2,410,180	+		IAI47_11400	0.52	-0.9
2,410,180	+		IAI47_11400	0.52	-0.2
2,410,180	+		IAI47_11400	0.52	+0.9
2,410,181	-		IAI47_11400	0.52	-0.2
2,410,181	-		IAI47_11400	0.52	+0.5
2,410,181	-		IAI47_11400	0.52	-1.7
2,410,181	-		IAI47_11400	0.52	-1.3
2,410,192	+		IAI47_11400	0.54	-2.5
2,410,192	+		IAI47_11400	0.54	+1.1
2,410,193	-		IAI47_11400	0.54	-0.4
2,410,193	-		IAI47_11400	0.54	+0.8
2,410,196	-		IAI47_11400	0.55	-0.9
2,410,196	-		IAI47_11400	0.55	-1.9
2,410,196	-		IAI47_11400	0.55	-0.5
2,410,196	-		IAI47_11400	0.55	+0.2
2,410,196	-		IAI47_11400	0.55	-1.3
2,410,196	-		IAI47_11400	0.55	-1.4
2,410,196	-		IAI47_11400	0.55	-0.5
2,410,196	-		IAI47_11400	0.55	-0.2
2,410,199	+		IAI47_11400	0.55	+0.1
2,410,199	+		IAI47_11400	0.55	+0.2
2,410,199	+		IAI47_11400	0.55	-1.4
2,410,200	-		IAI47_11400	0.56	-0.1
2,410,200	-		IAI47_11400	0.56	-1.1
2,410,200	-		IAI47_11400	0.56	-0.6
2,410,200	-		IAI47_11400	0.56	-0.5
2,410,200	-		IAI47_11400	0.56	-0.6
2,410,200	-		IAI47_11400	0.56	-0.8
2,410,200	-		IAI47_11400	0.56	-0.3
2,410,201	+		IAI47_11400	0.56	+1.1
2,410,201	+		IAI47_11400	0.56	+1.8
2,410,201	+		IAI47_11400	0.56	-0.3
2,410,202	-		IAI47_11400	0.56	+1.2
2,410,286	+		IAI47_11400	0.71	+0.9
2,410,286	+		IAI47_11400	0.71	+0.1
2,410,286	+		IAI47_11400	0.71	+0.4
2,410,293	+		IAI47_11400	0.72	+1.9
2,410,293	+		IAI47_11400	0.72	-0.2
2,410,293	+		IAI47_11400	0.72	-2.3
2,410,294	-		IAI47_11400	0.72	+0.3
2,410,294	-		IAI47_11400	0.72	-0.5
2,410,298	+		IAI47_11400	0.73	-0.9
2,410,299	-		IAI47_11400	0.73	+0.9
2,410,299	-		IAI47_11400	0.73	-1.9
2,410,325	+		IAI47_11400	0.78	+0.7
2,410,341	+		IAI47_11400	0.81	-1.3