Strain Fitness in Pantoea sp. MT58 around IAI47_10640

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
2,248,126	+		IAI47_10635	0.61	-0.6
2,248,126	+		IAI47_10635	0.61	+0.6
2,248,127	-		IAI47_10635	0.61	-0.2
2,248,201	+		IAI47_10635	0.64	+1.6
2,248,202	-		IAI47_10635	0.64	+0.4
2,248,202	-		IAI47_10635	0.64	-2.3
2,248,202	-		IAI47_10635	0.64	-1.0
2,248,202	-		IAI47_10635	0.64	+0.4
2,248,258	+		IAI47_10635	0.67	-0.6
2,248,258	+		IAI47_10635	0.67	-1.3
2,248,258	+		IAI47_10635	0.67	-0.6
2,248,259	-		IAI47_10635	0.67	+0.0
2,248,259	-		IAI47_10635	0.67	+0.3
2,248,259	-		IAI47_10635	0.67	+1.0
2,248,259	-		IAI47_10635	0.67	+0.3
2,248,261	+		IAI47_10635	0.67	-1.4
2,248,261	+		IAI47_10635	0.67	-0.5
2,248,261	+		IAI47_10635	0.67	+0.1
2,248,262	-		IAI47_10635	0.67	+0.2
2,248,262	-		IAI47_10635	0.67	-0.8
2,248,262	-		IAI47_10635	0.67	+1.0
2,248,328	-		IAI47_10635	0.70	-0.3
2,248,344	+		IAI47_10635	0.70	-1.8
2,248,344	+		IAI47_10635	0.70	+0.1
2,248,360	+		IAI47_10635	0.71	-2.0
2,248,361	-		IAI47_10635	0.71	+0.2
2,248,401	+		IAI47_10635	0.73	-1.5
2,248,401	+		IAI47_10635	0.73	-0.7
2,248,405	-		IAI47_10635	0.73	+0.4
2,248,422	-		IAI47_10635	0.74	+1.4
2,248,464	+		IAI47_10635	0.76	-1.5
2,248,465	-		IAI47_10635	0.76	-0.2
2,248,519	+		IAI47_10635	0.78	-0.4
2,248,519	+		IAI47_10635	0.78	-0.3
2,248,519	+		IAI47_10635	0.78	-0.3
2,248,519	+		IAI47_10635	0.78	+0.8
2,248,520	-		IAI47_10635	0.78	+3.2
2,248,520	-		IAI47_10635	0.78	-0.5
2,248,520	-		IAI47_10635	0.78	-0.2
2,248,520	-		IAI47_10635	0.78	+5.4
2,248,524	+		IAI47_10635	0.78	+1.6
2,248,524	+		IAI47_10635	0.78	-1.3
2,248,525	-		IAI47_10635	0.78	+0.3
2,248,542	+		IAI47_10635	0.79	-1.2
2,248,542	+		IAI47_10635	0.79	-0.5
2,248,542	+		IAI47_10635	0.79	-0.2
2,248,543	-		IAI47_10635	0.79	+3.8
2,248,543	-		IAI47_10635	0.79	-2.9
2,248,543	-		IAI47_10635	0.79	+0.6
2,248,758	+		IAI47_10635	0.89	+0.6
2,248,759	-		IAI47_10635	0.89	-1.1
2,248,759	-		IAI47_10635	0.89	-0.9
2,248,759	-		IAI47_10635	0.89	+1.2
2,248,761	+		IAI47_10635	0.89	-1.1
2,248,761	+		IAI47_10635	0.89	+0.3
2,248,761	+		IAI47_10635	0.89	-0.5
2,248,762	-		IAI47_10635	0.89	-0.8
2,248,762	-		IAI47_10635	0.89	-1.4
2,248,762	-		IAI47_10635	0.89	+0.5
2,248,762	-		IAI47_10635	0.89	-1.1
2,248,795	+				-0.8
2,248,796	-				+0.4
2,248,813	+				+1.2
2,248,814	-				-1.5
2,248,947	+				-0.4
2,248,947	+				+0.8
2,249,019	+				+0.2
2,249,019	+				-0.3
2,249,057	-				-1.5
2,249,069	+				+0.7
2,249,070	-				-0.4
2,249,102	-				+0.9
2,249,102	-				+0.3
2,249,102	-				+2.2
2,249,224	+				+0.4
2,249,242	+				-0.3
2,249,243	-				+0.1
2,249,243	-				-0.7
2,249,250	+				+1.3
2,249,251	-				+0.8
2,249,251	-				-1.9
2,249,321	+		IAI47_10640	0.13	+2.5
2,249,321	+		IAI47_10640	0.13	-0.7
2,249,321	+		IAI47_10640	0.13	+1.0
2,249,322	-		IAI47_10640	0.13	-0.7
2,249,485	+		IAI47_10640	0.23	+1.0
2,249,561	+		IAI47_10640	0.27	+1.6
2,249,562	-		IAI47_10640	0.27	-3.7
2,249,562	-		IAI47_10640	0.27	-1.4
2,249,562	-		IAI47_10640	0.27	-1.5
2,249,641	+		IAI47_10640	0.32	+0.4
2,249,641	+		IAI47_10640	0.32	+4.7
2,249,642	-		IAI47_10640	0.32	+4.6
2,249,677	+		IAI47_10640	0.34	-0.2
2,249,677	+		IAI47_10640	0.34	-0.5
2,249,680	+		IAI47_10640	0.34	+0.3
2,249,942	-		IAI47_10640	0.50	-0.8
2,249,968	+		IAI47_10640	0.52	+1.3
2,249,969	-		IAI47_10640	0.52	-0.2
2,249,969	-		IAI47_10640	0.52	-0.3
2,249,969	-		IAI47_10640	0.52	-1.4
2,250,059	+		IAI47_10640	0.57	+1.4
2,250,085	+		IAI47_10640	0.59	+0.4
2,250,085	+		IAI47_10640	0.59	-0.0
2,250,086	-		IAI47_10640	0.59	+0.3
2,250,086	-		IAI47_10640	0.59	-1.4
2,250,086	-		IAI47_10640	0.59	-0.0
2,250,112	+		IAI47_10640	0.60	+1.6
2,250,113	-		IAI47_10640	0.60	+0.2
2,250,172	+		IAI47_10640	0.64	-0.5
2,250,172	+		IAI47_10640	0.64	+0.1
2,250,173	-		IAI47_10640	0.64	-1.1
2,250,208	+		IAI47_10640	0.66	+0.0
2,250,208	+		IAI47_10640	0.66	+1.0
2,250,208	+		IAI47_10640	0.66	+0.0
2,250,209	-		IAI47_10640	0.66	-0.7
2,250,209	-		IAI47_10640	0.66	-1.1
2,250,209	-		IAI47_10640	0.66	+0.2
2,250,217	+		IAI47_10640	0.67	+1.4
2,250,218	-		IAI47_10640	0.67	+0.9
2,250,218	-		IAI47_10640	0.67	+1.1
2,250,218	-		IAI47_10640	0.67	-0.8
2,250,218	-		IAI47_10640	0.67	-2.4
2,250,229	+		IAI47_10640	0.67	+0.8
2,250,229	+		IAI47_10640	0.67	-0.7
2,250,229	+		IAI47_10640	0.67	-0.5
2,250,230	-		IAI47_10640	0.67	+0.9
2,250,230	-		IAI47_10640	0.67	-0.0
2,250,230	-		IAI47_10640	0.67	+1.6
2,250,230	-		IAI47_10640	0.67	-0.1
2,250,270	+		IAI47_10640	0.70	-1.6
2,250,270	+		IAI47_10640	0.70	+0.0
2,250,270	+		IAI47_10640	0.70	+0.3
2,250,270	+		IAI47_10640	0.70	-2.9
2,250,270	+		IAI47_10640	0.70	+0.7
2,250,271	-		IAI47_10640	0.70	+1.1
2,250,271	-		IAI47_10640	0.70	-0.4
2,250,271	-		IAI47_10640	0.70	-0.4
2,250,271	-		IAI47_10640	0.70	-0.2
2,250,271	-		IAI47_10640	0.70	-1.4
2,250,318	+		IAI47_10640	0.73	+0.5
2,250,319	-		IAI47_10640	0.73	-0.7
2,250,327	+		IAI47_10640	0.73	-1.2
2,250,328	-		IAI47_10640	0.73	-2.2
2,250,328	-		IAI47_10640	0.73	-1.7
2,250,341	+		IAI47_10640	0.74	+0.2
2,250,349	+		IAI47_10640	0.75	-0.4
2,250,350	-		IAI47_10640	0.75	+0.1
2,250,350	-		IAI47_10640	0.75	-1.4
2,250,384	+		IAI47_10640	0.77	-0.8
2,250,384	+		IAI47_10640	0.77	-0.7
2,250,454	+		IAI47_10640	0.81	-0.2
2,250,455	-		IAI47_10640	0.81	+1.0
2,250,526	+		IAI47_10640	0.85	+1.4
2,250,526	+		IAI47_10640	0.85	-1.1
2,250,526	+		IAI47_10640	0.85	-0.0
2,250,527	-		IAI47_10640	0.85	-0.4
2,250,587	-		IAI47_10640	0.89	+0.7
2,250,681	+				-1.7
2,250,682	-				+3.2
2,250,707	+				-0.0
2,250,708	-				-0.3
2,250,708	-				+0.4
2,250,712	+				+0.7
2,250,712	+				-0.4
2,250,712	+				-1.3
2,250,713	-				+0.3
2,250,713	-				+1.0
2,250,715	+				+0.9
2,250,715	+				-0.5
2,250,739	+				-1.7
2,250,740	-				-1.9
2,250,749	+				-1.9
2,250,749	+				-0.0
2,250,750	-				+0.7
2,250,750	-				+0.0
2,250,754	+				+0.6
2,250,763	+				-0.2
2,250,763	+				+3.3
2,250,763	+				-1.3
2,250,763	+				+0.9
2,250,763	+				+1.7
2,250,764	-				-0.6
2,250,764	-				+1.7
2,250,783	+				+0.4
2,250,783	+				-0.6
2,250,795	+				-1.4
2,250,795	+				-0.8
2,250,796	-				-0.6
2,250,824	-				-1.8
2,250,848	+				-2.0
2,250,898	+				-1.7
2,250,898	+				-1.0
2,250,899	-				-0.3
2,250,989	-				+0.3
2,250,998	+				-0.0
2,250,998	+				+2.5
2,250,998	+				+2.2
2,250,998	+				-1.4
2,250,998	+				-0.5
2,250,999	-				+0.2
2,250,999	-				-1.6
2,250,999	-				+1.0
2,250,999	-				-1.2
2,250,999	-				-0.3
2,251,021	+				-0.6
2,251,021	+				-0.7
2,251,022	-				-0.3
2,251,022	-				+0.2
2,251,022	-				+0.7
2,251,022	-				+1.1
2,251,022	-				-0.4
2,251,054	+				-0.0
2,251,054	+				-0.0
2,251,055	-				-0.7
2,251,150	+		IAI47_10645	0.13	-2.2
2,251,226	+		IAI47_10645	0.19	-0.8
2,251,226	+		IAI47_10645	0.19	-0.4
2,251,227	-		IAI47_10645	0.19	-0.2
2,251,227	-		IAI47_10645	0.19	+1.8
2,251,243	+		IAI47_10645	0.20	+2.8
2,251,244	-		IAI47_10645	0.20	+0.4
2,251,310	+		IAI47_10645	0.25	+1.4
2,251,310	+		IAI47_10645	0.25	-1.0
2,251,310	+		IAI47_10645	0.25	+0.0
2,251,310	+		IAI47_10645	0.25	-0.0
2,251,310	+		IAI47_10645	0.25	+2.5
2,251,311	-		IAI47_10645	0.25	+1.0
2,251,311	-		IAI47_10645	0.25	+0.8
2,251,358	+		IAI47_10645	0.29	+0.3
2,251,358	+		IAI47_10645	0.29	-0.0
2,251,358	+		IAI47_10645	0.29	+0.5
2,251,359	-		IAI47_10645	0.29	-0.4
2,251,359	-		IAI47_10645	0.29	-0.2
2,251,359	-		IAI47_10645	0.29	+0.8
2,251,360	+		IAI47_10645	0.29	-0.7
2,251,360	+		IAI47_10645	0.29	+0.5
2,251,361	-		IAI47_10645	0.29	-1.1
2,251,400	+		IAI47_10645	0.32	-0.8
2,251,400	+		IAI47_10645	0.32	-1.4
2,251,400	+		IAI47_10645	0.32	+1.1
2,251,400	+		IAI47_10645	0.32	+0.7
2,251,400	+		IAI47_10645	0.32	+0.5
2,251,400	+		IAI47_10645	0.32	+0.2
2,251,400	+		IAI47_10645	0.32	-0.4
2,251,400	-		IAI47_10645	0.32	+0.8
2,251,401	-		IAI47_10645	0.33	-0.8
2,251,401	-		IAI47_10645	0.33	+1.1
2,251,401	-		IAI47_10645	0.33	-0.2
2,251,401	-		IAI47_10645	0.33	-0.3
2,251,402	+		IAI47_10645	0.33	+0.5
2,251,429	+		IAI47_10645	0.35	-1.0
2,251,429	+		IAI47_10645	0.35	+1.8
2,251,429	+		IAI47_10645	0.35	+1.5
2,251,429	+		IAI47_10645	0.35	-0.8
2,251,430	-		IAI47_10645	0.35	+5.5
2,251,430	-		IAI47_10645	0.35	-1.4
2,251,430	-		IAI47_10645	0.35	-0.4
2,251,430	-		IAI47_10645	0.35	-2.0
2,251,430	-		IAI47_10645	0.35	+1.6
2,251,460	-		IAI47_10645	0.37	-0.4
2,251,460	-		IAI47_10645	0.37	+0.3
2,251,460	-		IAI47_10645	0.37	-0.9
2,251,468	+		IAI47_10645	0.38	+0.4
2,251,468	+		IAI47_10645	0.38	-2.4
2,251,469	-		IAI47_10645	0.38	+2.2
2,251,469	-		IAI47_10645	0.38	+1.3
2,251,483	+		IAI47_10645	0.39	-0.3
2,251,484	-		IAI47_10645	0.39	-1.6
2,251,484	-		IAI47_10645	0.39	+1.2
2,251,486	+		IAI47_10645	0.39	-0.2
2,251,486	+		IAI47_10645	0.39	+0.5
2,251,486	+		IAI47_10645	0.39	-0.8
2,251,486	+		IAI47_10645	0.39	-0.6
2,251,486	+		IAI47_10645	0.39	+0.0
2,251,486	+		IAI47_10645	0.39	-0.8
2,251,487	-		IAI47_10645	0.39	+0.7
2,251,487	-		IAI47_10645	0.39	+1.1
2,251,487	-		IAI47_10645	0.39	-0.9
2,251,487	-		IAI47_10645	0.39	+0.1
2,251,487	-		IAI47_10645	0.39	+1.3
2,251,537	+		IAI47_10645	0.43	+0.1
2,251,537	+		IAI47_10645	0.43	-0.5
2,251,538	-		IAI47_10645	0.43	-0.4
2,251,538	-		IAI47_10645	0.43	-1.8
2,251,538	-		IAI47_10645	0.43	+0.1
2,251,538	-		IAI47_10645	0.43	-0.1
2,251,624	+		IAI47_10645	0.50	+0.2
2,251,624	+		IAI47_10645	0.50	+1.8
2,251,624	+		IAI47_10645	0.50	-0.2
2,251,657	+		IAI47_10645	0.53	+2.2
2,251,657	+		IAI47_10645	0.53	-1.9
2,251,657	+		IAI47_10645	0.53	-2.3
2,251,657	+		IAI47_10645	0.53	-1.1
2,251,658	-		IAI47_10645	0.53	-0.6
2,251,658	-		IAI47_10645	0.53	-0.4
2,251,658	-		IAI47_10645	0.53	-0.3
2,251,687	+		IAI47_10645	0.55	-0.9
2,251,687	+		IAI47_10645	0.55	+1.8
2,251,687	+		IAI47_10645	0.55	-0.5
2,251,687	+		IAI47_10645	0.55	-0.1
2,251,688	-		IAI47_10645	0.55	-0.6
2,251,688	-		IAI47_10645	0.55	-0.2
2,251,688	-		IAI47_10645	0.55	-1.0
2,251,688	-		IAI47_10645	0.55	-0.7
2,251,688	-		IAI47_10645	0.55	+2.2
2,251,718	-		IAI47_10645	0.58	-1.1