Strain Fitness in Pantoea sp. MT58 around IAI47_00605

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00595 and IAI47_00600 are separated by 49 nucleotidesIAI47_00600 and IAI47_00605 are separated by 35 nucleotidesIAI47_00605 and IAI47_00610 are separated by 119 nucleotidesIAI47_00610 and IAI47_00615 overlap by 23 nucleotides IAI47_00595: IAI47_00595 - ribonuclease PH, at 132,138 to 132,854 _00595 IAI47_00600: IAI47_00600 - orotate phosphoribosyltransferase, at 132,904 to 133,545 _00600 IAI47_00605: IAI47_00605 - nucleoid occlusion factor SlmA, at 133,581 to 134,177 _00605 IAI47_00610: IAI47_00610 - dUTP diphosphatase, at 134,297 to 134,755 _00610 IAI47_00615: IAI47_00615 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 134,733 to 135,953 _00615 Position (kb) 133 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 132.588 kb on - strand, within IAI47_00595at 132.609 kb on - strand, within IAI47_00595at 132.609 kb on - strand, within IAI47_00595at 132.609 kb on - strand, within IAI47_00595at 132.666 kb on + strand, within IAI47_00595at 132.666 kb on + strand, within IAI47_00595at 132.666 kb on + strand, within IAI47_00595at 132.666 kb on + strand, within IAI47_00595at 132.666 kb on + strand, within IAI47_00595at 132.666 kb on + strand, within IAI47_00595at 132.666 kb on + strand, within IAI47_00595at 132.666 kb on + strand, within IAI47_00595at 132.667 kb on - strand, within IAI47_00595at 132.667 kb on - strand, within IAI47_00595at 132.667 kb on - strand, within IAI47_00595at 132.667 kb on - strand, within IAI47_00595at 132.667 kb on - strand, within IAI47_00595at 132.667 kb on - strand, within IAI47_00595at 132.667 kb on - strand, within IAI47_00595at 132.667 kb on - strand, within IAI47_00595at 132.857 kb on + strandat 132.857 kb on + strandat 132.857 kb on + strandat 132.857 kb on + strandat 132.857 kb on + strandat 132.857 kb on + strandat 132.857 kb on + strandat 132.858 kb on - strandat 132.858 kb on - strandat 132.858 kb on - strandat 132.858 kb on - strandat 132.888 kb on - strandat 132.927 kb on + strandat 132.928 kb on - strandat 132.928 kb on - strandat 132.990 kb on + strand, within IAI47_00600at 132.991 kb on - strand, within IAI47_00600at 133.000 kb on + strand, within IAI47_00600at 133.001 kb on - strand, within IAI47_00600at 133.009 kb on - strand, within IAI47_00600at 133.023 kb on + strand, within IAI47_00600at 133.040 kb on + strand, within IAI47_00600at 133.060 kb on + strand, within IAI47_00600at 133.061 kb on - strand, within IAI47_00600at 133.061 kb on - strand, within IAI47_00600at 133.117 kb on + strand, within IAI47_00600at 133.117 kb on + strand, within IAI47_00600at 133.117 kb on + strand, within IAI47_00600at 133.117 kb on + strand, within IAI47_00600at 133.117 kb on + strand, within IAI47_00600at 133.117 kb on + strand, within IAI47_00600at 133.117 kb on + strand, within IAI47_00600at 133.117 kb on + strand, within IAI47_00600at 133.118 kb on - strand, within IAI47_00600at 133.118 kb on - strand, within IAI47_00600at 133.118 kb on - strand, within IAI47_00600at 133.119 kb on + strand, within IAI47_00600at 133.119 kb on + strand, within IAI47_00600at 133.120 kb on - strand, within IAI47_00600at 133.120 kb on - strand, within IAI47_00600at 133.137 kb on + strand, within IAI47_00600at 133.137 kb on + strand, within IAI47_00600at 133.137 kb on + strand, within IAI47_00600at 133.137 kb on + strand, within IAI47_00600at 133.138 kb on - strand, within IAI47_00600at 133.187 kb on - strand, within IAI47_00600at 133.187 kb on - strand, within IAI47_00600at 133.187 kb on - strand, within IAI47_00600at 133.194 kb on + strand, within IAI47_00600at 133.194 kb on + strand, within IAI47_00600at 133.195 kb on - strand, within IAI47_00600at 133.201 kb on - strand, within IAI47_00600at 133.238 kb on + strand, within IAI47_00600at 133.238 kb on + strand, within IAI47_00600at 133.238 kb on + strand, within IAI47_00600at 133.238 kb on + strand, within IAI47_00600at 133.239 kb on - strand, within IAI47_00600at 133.317 kb on + strand, within IAI47_00600at 133.317 kb on + strand, within IAI47_00600at 133.317 kb on + strand, within IAI47_00600at 133.317 kb on + strand, within IAI47_00600at 133.318 kb on - strand, within IAI47_00600at 133.318 kb on - strand, within IAI47_00600at 133.320 kb on + strand, within IAI47_00600at 133.424 kb on - strand, within IAI47_00600at 133.431 kb on + strand, within IAI47_00600at 133.432 kb on - strand, within IAI47_00600at 133.432 kb on - strand, within IAI47_00600at 133.446 kb on + strand, within IAI47_00600at 133.446 kb on + strand, within IAI47_00600at 133.446 kb on + strand, within IAI47_00600at 133.447 kb on - strand, within IAI47_00600at 133.447 kb on - strand, within IAI47_00600at 133.449 kb on + strand, within IAI47_00600at 133.449 kb on + strand, within IAI47_00600at 133.522 kb on + strandat 133.523 kb on - strandat 133.523 kb on - strandat 133.523 kb on - strandat 133.534 kb on + strandat 133.534 kb on + strandat 133.543 kb on + strandat 133.544 kb on - strandat 133.582 kb on + strandat 133.582 kb on + strandat 133.583 kb on - strandat 133.583 kb on - strandat 133.583 kb on - strandat 133.583 kb on - strandat 133.583 kb on - strandat 133.583 kb on - strandat 133.583 kb on - strandat 133.583 kb on - strandat 133.587 kb on + strandat 133.588 kb on - strandat 133.660 kb on + strand, within IAI47_00605at 133.660 kb on + strand, within IAI47_00605at 133.661 kb on - strand, within IAI47_00605at 133.661 kb on - strand, within IAI47_00605at 133.661 kb on - strand, within IAI47_00605at 133.661 kb on - strand, within IAI47_00605at 133.805 kb on + strand, within IAI47_00605at 133.805 kb on + strand, within IAI47_00605at 133.805 kb on + strand, within IAI47_00605at 133.805 kb on + strand, within IAI47_00605at 133.806 kb on - strand, within IAI47_00605at 133.806 kb on - strand, within IAI47_00605at 133.806 kb on - strand, within IAI47_00605at 133.806 kb on - strand, within IAI47_00605at 133.806 kb on - strand, within IAI47_00605at 133.806 kb on - strand, within IAI47_00605at 133.854 kb on + strand, within IAI47_00605at 133.854 kb on + strand, within IAI47_00605at 133.854 kb on + strand, within IAI47_00605at 133.855 kb on - strand, within IAI47_00605at 133.875 kb on - strand, within IAI47_00605at 133.875 kb on - strand, within IAI47_00605at 133.875 kb on - strand, within IAI47_00605at 133.997 kb on + strand, within IAI47_00605at 133.998 kb on - strand, within IAI47_00605at 134.032 kb on + strand, within IAI47_00605at 134.033 kb on - strand, within IAI47_00605at 134.183 kb on + strandat 134.183 kb on + strandat 134.204 kb on + strandat 134.204 kb on + strandat 134.205 kb on - strandat 134.208 kb on + strandat 134.208 kb on + strandat 134.208 kb on + strandat 134.209 kb on - strandat 134.209 kb on - strandat 134.221 kb on + strandat 134.221 kb on + strandat 134.221 kb on + strandat 134.221 kb on + strandat 134.221 kb on + strandat 134.221 kb on + strandat 134.222 kb on - strandat 134.222 kb on - strandat 134.222 kb on - strandat 134.222 kb on - strandat 134.222 kb on - strandat 134.265 kb on + strandat 134.266 kb on - strandat 134.274 kb on + strandat 134.274 kb on + strandat 134.275 kb on - strandat 134.275 kb on - strandat 134.275 kb on - strandat 134.275 kb on - strandat 134.288 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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132,588 - IAI47_00595 0.63 -0.1
132,609 - IAI47_00595 0.66 +0.4
132,609 - IAI47_00595 0.66 +1.4
132,609 - IAI47_00595 0.66 -0.7
132,666 + IAI47_00595 0.74 +3.1
132,666 + IAI47_00595 0.74 +0.3
132,666 + IAI47_00595 0.74 -0.9
132,666 + IAI47_00595 0.74 -0.6
132,666 + IAI47_00595 0.74 -0.1
132,666 + IAI47_00595 0.74 -0.5
132,666 + IAI47_00595 0.74 -0.7
132,666 + IAI47_00595 0.74 -1.6
132,667 - IAI47_00595 0.74 -1.5
132,667 - IAI47_00595 0.74 -1.0
132,667 - IAI47_00595 0.74 -0.6
132,667 - IAI47_00595 0.74 +0.6
132,667 - IAI47_00595 0.74 +1.9
132,667 - IAI47_00595 0.74 +0.7
132,667 - IAI47_00595 0.74 -1.2
132,667 - IAI47_00595 0.74 -2.1
132,857 + -0.8
132,857 + +0.3
132,857 + +0.3
132,857 + +0.1
132,857 + -0.4
132,857 + +0.5
132,857 + +0.3
132,858 - +0.6
132,858 - -0.4
132,858 - -0.4
132,858 - -1.5
132,888 - +0.6
132,927 + -1.8
132,928 - -1.1
132,928 - +1.6
132,990 + IAI47_00600 0.13 +0.1
132,991 - IAI47_00600 0.14 -0.2
133,000 + IAI47_00600 0.15 +0.1
133,001 - IAI47_00600 0.15 +1.1
133,009 - IAI47_00600 0.16 +0.6
133,023 + IAI47_00600 0.19 -1.3
133,040 + IAI47_00600 0.21 +0.4
133,060 + IAI47_00600 0.24 +1.2
133,061 - IAI47_00600 0.24 -0.1
133,061 - IAI47_00600 0.24 -0.4
133,117 + IAI47_00600 0.33 -0.6
133,117 + IAI47_00600 0.33 -1.3
133,117 + IAI47_00600 0.33 -3.0
133,117 + IAI47_00600 0.33 -1.4
133,117 + IAI47_00600 0.33 +1.1
133,117 + IAI47_00600 0.33 -0.8
133,117 + IAI47_00600 0.33 +0.2
133,117 + IAI47_00600 0.33 -1.5
133,118 - IAI47_00600 0.33 -0.7
133,118 - IAI47_00600 0.33 +0.5
133,118 - IAI47_00600 0.33 -1.3
133,119 + IAI47_00600 0.33 +0.0
133,119 + IAI47_00600 0.33 -1.2
133,120 - IAI47_00600 0.34 -0.5
133,120 - IAI47_00600 0.34 -0.2
133,137 + IAI47_00600 0.36 +0.1
133,137 + IAI47_00600 0.36 -1.8
133,137 + IAI47_00600 0.36 +0.3
133,137 + IAI47_00600 0.36 -0.6
133,138 - IAI47_00600 0.36 -0.1
133,187 - IAI47_00600 0.44 -2.1
133,187 - IAI47_00600 0.44 -0.0
133,187 - IAI47_00600 0.44 -2.6
133,194 + IAI47_00600 0.45 +0.6
133,194 + IAI47_00600 0.45 -2.0
133,195 - IAI47_00600 0.45 +1.6
133,201 - IAI47_00600 0.46 -0.1
133,238 + IAI47_00600 0.52 -0.2
133,238 + IAI47_00600 0.52 -0.2
133,238 + IAI47_00600 0.52 -0.6
133,238 + IAI47_00600 0.52 +1.8
133,239 - IAI47_00600 0.52 -0.9
133,317 + IAI47_00600 0.64 -0.3
133,317 + IAI47_00600 0.64 -0.9
133,317 + IAI47_00600 0.64 -1.0
133,317 + IAI47_00600 0.64 -2.0
133,318 - IAI47_00600 0.64 -0.6
133,318 - IAI47_00600 0.64 -0.9
133,320 + IAI47_00600 0.65 -1.0
133,424 - IAI47_00600 0.81 -2.1
133,431 + IAI47_00600 0.82 -0.7
133,432 - IAI47_00600 0.82 -0.5
133,432 - IAI47_00600 0.82 -0.8
133,446 + IAI47_00600 0.84 +0.1
133,446 + IAI47_00600 0.84 -1.1
133,446 + IAI47_00600 0.84 -1.0
133,447 - IAI47_00600 0.85 -0.6
133,447 - IAI47_00600 0.85 -0.8
133,449 + IAI47_00600 0.85 -1.5
133,449 + IAI47_00600 0.85 -0.6
133,522 + -1.2
133,523 - +0.0
133,523 - -0.7
133,523 - -0.4
133,534 + +0.5
133,534 + -1.2
133,543 + -0.4
133,544 - -0.4
133,582 + -0.6
133,582 + -0.1
133,583 - +0.5
133,583 - -0.3
133,583 - +0.2
133,583 - -2.0
133,583 - -0.6
133,583 - -1.0
133,583 - +0.3
133,583 - -0.6
133,587 + -0.2
133,588 - +0.2
133,660 + IAI47_00605 0.13 -0.1
133,660 + IAI47_00605 0.13 -0.1
133,661 - IAI47_00605 0.13 +0.3
133,661 - IAI47_00605 0.13 -0.3
133,661 - IAI47_00605 0.13 -1.2
133,661 - IAI47_00605 0.13 +0.6
133,805 + IAI47_00605 0.38 +0.2
133,805 + IAI47_00605 0.38 +0.3
133,805 + IAI47_00605 0.38 -0.5
133,805 + IAI47_00605 0.38 -0.5
133,806 - IAI47_00605 0.38 +1.6
133,806 - IAI47_00605 0.38 -0.2
133,806 - IAI47_00605 0.38 +0.4
133,806 - IAI47_00605 0.38 -1.0
133,806 - IAI47_00605 0.38 +0.5
133,806 - IAI47_00605 0.38 +0.2
133,854 + IAI47_00605 0.46 +0.2
133,854 + IAI47_00605 0.46 -1.4
133,854 + IAI47_00605 0.46 -0.9
133,855 - IAI47_00605 0.46 +1.2
133,875 - IAI47_00605 0.49 -0.3
133,875 - IAI47_00605 0.49 +1.4
133,875 - IAI47_00605 0.49 +0.6
133,997 + IAI47_00605 0.70 -1.1
133,998 - IAI47_00605 0.70 +0.6
134,032 + IAI47_00605 0.76 -0.6
134,033 - IAI47_00605 0.76 -1.4
134,183 + -1.3
134,183 + -0.9
134,204 + +0.8
134,204 + +0.2
134,205 - -2.0
134,208 + -0.6
134,208 + -0.7
134,208 + -1.1
134,209 - +2.0
134,209 - -1.5
134,221 + -1.8
134,221 + -2.0
134,221 + -0.3
134,221 + -1.1
134,221 + -2.4
134,221 + +1.0
134,222 - -1.3
134,222 - -1.8
134,222 - +0.1
134,222 - -1.4
134,222 - -0.0
134,265 + +0.1
134,266 - +3.3
134,274 + +0.4
134,274 + -2.5
134,275 - +0.3
134,275 - +0.6
134,275 - +0.3
134,275 - -0.1
134,288 + +0.6

Or see this region's nucleotide sequence