Strain Fitness in Rahnella sp. WP5 around EX31_RS18510

Experiment: L-Glutamine (N); ShewMM media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18505 and EX31_RS18510 are separated by 198 nucleotidesEX31_RS18510 and EX31_RS18515 are separated by 106 nucleotides EX31_RS18505: EX31_RS18505 - molybdopterin-dependent oxidoreductase, at 271,408 to 273,377 _RS18505 EX31_RS18510: EX31_RS18510 - serine--tRNA ligase, at 273,576 to 274,868 _RS18510 EX31_RS18515: EX31_RS18515 - replication-associated recombination protein A, at 274,975 to 276,318 _RS18515 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2 3at 272.589 kb on - strand, within EX31_RS18505at 272.590 kb on + strand, within EX31_RS18505at 272.590 kb on + strand, within EX31_RS18505at 272.590 kb on + strand, within EX31_RS18505at 272.590 kb on + strand, within EX31_RS18505at 272.590 kb on + strand, within EX31_RS18505at 272.591 kb on - strand, within EX31_RS18505at 272.591 kb on - strand, within EX31_RS18505at 272.591 kb on - strand, within EX31_RS18505at 272.591 kb on - strand, within EX31_RS18505at 272.591 kb on - strand, within EX31_RS18505at 272.624 kb on + strand, within EX31_RS18505at 272.658 kb on - strand, within EX31_RS18505at 272.721 kb on - strand, within EX31_RS18505at 272.721 kb on - strand, within EX31_RS18505at 272.722 kb on + strand, within EX31_RS18505at 272.765 kb on + strand, within EX31_RS18505at 272.765 kb on + strand, within EX31_RS18505at 272.766 kb on - strand, within EX31_RS18505at 272.857 kb on - strand, within EX31_RS18505at 272.857 kb on - strand, within EX31_RS18505at 272.857 kb on - strand, within EX31_RS18505at 272.872 kb on + strand, within EX31_RS18505at 272.873 kb on - strand, within EX31_RS18505at 272.873 kb on - strand, within EX31_RS18505at 272.873 kb on - strand, within EX31_RS18505at 272.879 kb on + strand, within EX31_RS18505at 272.880 kb on - strand, within EX31_RS18505at 272.880 kb on - strand, within EX31_RS18505at 272.880 kb on - strand, within EX31_RS18505at 272.880 kb on - strand, within EX31_RS18505at 272.880 kb on - strand, within EX31_RS18505at 272.881 kb on + strand, within EX31_RS18505at 272.881 kb on + strand, within EX31_RS18505at 272.881 kb on + strand, within EX31_RS18505at 272.881 kb on + strand, within EX31_RS18505at 272.881 kb on + strand, within EX31_RS18505at 272.882 kb on - strand, within EX31_RS18505at 272.882 kb on - strand, within EX31_RS18505at 272.882 kb on - strand, within EX31_RS18505at 272.883 kb on + strand, within EX31_RS18505at 272.912 kb on + strand, within EX31_RS18505at 272.913 kb on - strand, within EX31_RS18505at 272.958 kb on - strand, within EX31_RS18505at 272.973 kb on - strand, within EX31_RS18505at 273.044 kb on + strand, within EX31_RS18505at 273.044 kb on + strand, within EX31_RS18505at 273.085 kb on + strand, within EX31_RS18505at 273.085 kb on + strand, within EX31_RS18505at 273.086 kb on - strand, within EX31_RS18505at 273.089 kb on + strand, within EX31_RS18505at 273.089 kb on + strand, within EX31_RS18505at 273.090 kb on - strand, within EX31_RS18505at 273.090 kb on - strand, within EX31_RS18505at 273.121 kb on + strand, within EX31_RS18505at 273.121 kb on + strand, within EX31_RS18505at 273.122 kb on - strand, within EX31_RS18505at 273.138 kb on + strand, within EX31_RS18505at 273.138 kb on + strand, within EX31_RS18505at 273.138 kb on + strand, within EX31_RS18505at 273.138 kb on + strand, within EX31_RS18505at 273.138 kb on + strand, within EX31_RS18505at 273.138 kb on + strand, within EX31_RS18505at 273.138 kb on + strand, within EX31_RS18505at 273.138 kb on + strand, within EX31_RS18505at 273.139 kb on - strand, within EX31_RS18505at 273.139 kb on - strand, within EX31_RS18505at 273.139 kb on - strand, within EX31_RS18505at 273.151 kb on - strand, within EX31_RS18505at 273.200 kb on + strandat 273.201 kb on - strandat 273.214 kb on - strandat 273.270 kb on + strandat 273.336 kb on - strandat 273.422 kb on + strandat 273.425 kb on + strandat 273.425 kb on + strandat 273.429 kb on + strandat 273.429 kb on + strandat 273.429 kb on + strandat 273.429 kb on + strandat 273.430 kb on - strandat 273.430 kb on - strandat 273.430 kb on - strandat 273.432 kb on + strandat 273.433 kb on - strandat 273.433 kb on - strandat 273.456 kb on + strandat 273.504 kb on + strandat 273.504 kb on + strandat 273.504 kb on + strandat 273.504 kb on + strandat 273.505 kb on - strandat 273.505 kb on - strandat 273.537 kb on + strandat 273.558 kb on - strandat 273.567 kb on - strandat 273.569 kb on - strandat 273.569 kb on - strandat 274.946 kb on - strandat 274.946 kb on - strandat 274.960 kb on - strandat 274.977 kb on - strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.075 kb on + strandat 275.076 kb on - strandat 275.105 kb on + strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.124 kb on - strand, within EX31_RS18515at 275.124 kb on - strand, within EX31_RS18515at 275.124 kb on - strand, within EX31_RS18515at 275.200 kb on - strand, within EX31_RS18515at 275.200 kb on - strand, within EX31_RS18515at 275.270 kb on + strand, within EX31_RS18515at 275.270 kb on + strand, within EX31_RS18515at 275.271 kb on - strand, within EX31_RS18515at 275.272 kb on + strand, within EX31_RS18515at 275.273 kb on - strand, within EX31_RS18515at 275.273 kb on - strand, within EX31_RS18515at 275.280 kb on + strand, within EX31_RS18515at 275.280 kb on + strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.304 kb on - strand, within EX31_RS18515at 275.304 kb on - strand, within EX31_RS18515at 275.356 kb on - strand, within EX31_RS18515at 275.356 kb on - strand, within EX31_RS18515at 275.450 kb on + strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.492 kb on + strand, within EX31_RS18515at 275.493 kb on - strand, within EX31_RS18515at 275.493 kb on - strand, within EX31_RS18515at 275.529 kb on + strand, within EX31_RS18515at 275.530 kb on - strand, within EX31_RS18515at 275.553 kb on - strand, within EX31_RS18515at 275.568 kb on + strand, within EX31_RS18515at 275.612 kb on - strand, within EX31_RS18515at 275.832 kb on + strand, within EX31_RS18515at 275.832 kb on + strand, within EX31_RS18515at 275.836 kb on + strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
remove
272,589 - EX31_RS18505 0.60 -0.6
272,590 + EX31_RS18505 0.60 -0.1
272,590 + EX31_RS18505 0.60 -1.7
272,590 + EX31_RS18505 0.60 -0.2
272,590 + EX31_RS18505 0.60 -0.8
272,590 + EX31_RS18505 0.60 -0.6
272,591 - EX31_RS18505 0.60 +0.0
272,591 - EX31_RS18505 0.60 +0.4
272,591 - EX31_RS18505 0.60 +1.2
272,591 - EX31_RS18505 0.60 -1.3
272,591 - EX31_RS18505 0.60 -0.4
272,624 + EX31_RS18505 0.62 -0.2
272,658 - EX31_RS18505 0.63 +0.1
272,721 - EX31_RS18505 0.67 -1.5
272,721 - EX31_RS18505 0.67 +0.6
272,722 + EX31_RS18505 0.67 +1.2
272,765 + EX31_RS18505 0.69 +1.6
272,765 + EX31_RS18505 0.69 +0.8
272,766 - EX31_RS18505 0.69 -1.6
272,857 - EX31_RS18505 0.74 -0.4
272,857 - EX31_RS18505 0.74 +0.1
272,857 - EX31_RS18505 0.74 +2.5
272,872 + EX31_RS18505 0.74 +1.8
272,873 - EX31_RS18505 0.74 +0.4
272,873 - EX31_RS18505 0.74 +0.9
272,873 - EX31_RS18505 0.74 -0.6
272,879 + EX31_RS18505 0.75 -0.5
272,880 - EX31_RS18505 0.75 +0.5
272,880 - EX31_RS18505 0.75 -0.9
272,880 - EX31_RS18505 0.75 +1.2
272,880 - EX31_RS18505 0.75 +1.7
272,880 - EX31_RS18505 0.75 -0.2
272,881 + EX31_RS18505 0.75 -0.5
272,881 + EX31_RS18505 0.75 -0.1
272,881 + EX31_RS18505 0.75 -0.6
272,881 + EX31_RS18505 0.75 +0.3
272,881 + EX31_RS18505 0.75 +1.0
272,882 - EX31_RS18505 0.75 +2.2
272,882 - EX31_RS18505 0.75 -0.8
272,882 - EX31_RS18505 0.75 +0.8
272,883 + EX31_RS18505 0.75 -1.3
272,912 + EX31_RS18505 0.76 +3.0
272,913 - EX31_RS18505 0.76 +0.1
272,958 - EX31_RS18505 0.79 -0.2
272,973 - EX31_RS18505 0.79 -0.0
273,044 + EX31_RS18505 0.83 -1.3
273,044 + EX31_RS18505 0.83 +2.5
273,085 + EX31_RS18505 0.85 -0.6
273,085 + EX31_RS18505 0.85 +0.6
273,086 - EX31_RS18505 0.85 -0.3
273,089 + EX31_RS18505 0.85 -1.6
273,089 + EX31_RS18505 0.85 -0.4
273,090 - EX31_RS18505 0.85 -1.5
273,090 - EX31_RS18505 0.85 -0.8
273,121 + EX31_RS18505 0.87 -0.5
273,121 + EX31_RS18505 0.87 +1.8
273,122 - EX31_RS18505 0.87 -0.4
273,138 + EX31_RS18505 0.88 -2.0
273,138 + EX31_RS18505 0.88 +0.3
273,138 + EX31_RS18505 0.88 +0.2
273,138 + EX31_RS18505 0.88 -0.2
273,138 + EX31_RS18505 0.88 +0.4
273,138 + EX31_RS18505 0.88 +1.0
273,138 + EX31_RS18505 0.88 +1.6
273,138 + EX31_RS18505 0.88 -1.1
273,139 - EX31_RS18505 0.88 +0.5
273,139 - EX31_RS18505 0.88 +0.3
273,139 - EX31_RS18505 0.88 -0.3
273,151 - EX31_RS18505 0.88 +0.6
273,200 + -0.0
273,201 - -1.4
273,214 - +0.8
273,270 + +0.4
273,336 - -0.1
273,422 + -0.7
273,425 + -1.6
273,425 + -0.4
273,429 + -0.1
273,429 + -0.3
273,429 + +0.0
273,429 + -0.4
273,430 - -2.1
273,430 - +1.3
273,430 - -0.3
273,432 + -0.3
273,433 - +0.5
273,433 - +3.2
273,456 + -1.0
273,504 + +0.3
273,504 + +0.6
273,504 + -0.8
273,504 + +1.1
273,505 - -0.3
273,505 - +1.1
273,537 + +0.9
273,558 - -0.4
273,567 - -1.1
273,569 - -0.4
273,569 - +0.4
274,946 - -0.3
274,946 - +0.6
274,960 - -1.1
274,977 - -0.9
275,072 + -0.7
275,072 + -1.2
275,072 + +1.9
275,072 + -1.8
275,073 - -0.4
275,073 - +0.6
275,073 - +1.8
275,073 - +0.7
275,073 - +0.2
275,075 + -0.1
275,076 - +0.3
275,105 + +0.4
275,106 - +0.1
275,106 - -0.0
275,106 - -0.2
275,106 - -1.4
275,124 - EX31_RS18515 0.11 -1.4
275,124 - EX31_RS18515 0.11 -0.5
275,124 - EX31_RS18515 0.11 +0.6
275,200 - EX31_RS18515 0.17 +2.2
275,200 - EX31_RS18515 0.17 +2.2
275,270 + EX31_RS18515 0.22 -0.5
275,270 + EX31_RS18515 0.22 -0.6
275,271 - EX31_RS18515 0.22 +0.2
275,272 + EX31_RS18515 0.22 -0.3
275,273 - EX31_RS18515 0.22 +0.3
275,273 - EX31_RS18515 0.22 -0.3
275,280 + EX31_RS18515 0.23 -0.8
275,280 + EX31_RS18515 0.23 +2.2
275,281 - EX31_RS18515 0.23 -1.1
275,281 - EX31_RS18515 0.23 +0.4
275,281 - EX31_RS18515 0.23 +0.8
275,281 - EX31_RS18515 0.23 -0.2
275,304 - EX31_RS18515 0.24 -0.8
275,304 - EX31_RS18515 0.24 -1.8
275,356 - EX31_RS18515 0.28 +0.3
275,356 - EX31_RS18515 0.28 -0.4
275,450 + EX31_RS18515 0.35 -0.1
275,451 - EX31_RS18515 0.35 +0.3
275,451 - EX31_RS18515 0.35 +0.3
275,451 - EX31_RS18515 0.35 +0.9
275,451 - EX31_RS18515 0.35 +1.3
275,492 + EX31_RS18515 0.38 -1.1
275,493 - EX31_RS18515 0.39 -0.3
275,493 - EX31_RS18515 0.39 +0.7
275,529 + EX31_RS18515 0.41 +0.5
275,530 - EX31_RS18515 0.41 +0.1
275,553 - EX31_RS18515 0.43 -0.3
275,568 + EX31_RS18515 0.44 -0.2
275,612 - EX31_RS18515 0.47 -0.6
275,832 + EX31_RS18515 0.64 +2.2
275,832 + EX31_RS18515 0.64 -0.1
275,836 + EX31_RS18515 0.64 -0.4
275,837 - EX31_RS18515 0.64 -0.4
275,837 - EX31_RS18515 0.64 -1.0
275,837 - EX31_RS18515 0.64 -0.3
275,837 - EX31_RS18515 0.64 +0.5
275,837 - EX31_RS18515 0.64 +0.4
275,840 + EX31_RS18515 0.64 +0.6
275,840 + EX31_RS18515 0.64 +0.9
275,840 + EX31_RS18515 0.64 +0.2
275,841 - EX31_RS18515 0.64 -0.1
275,841 - EX31_RS18515 0.64 +0.5
275,841 - EX31_RS18515 0.64 -0.2

Or see this region's nucleotide sequence