Strain Fitness in Rahnella sp. WP5 around EX31_RS14325

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14315 and EX31_RS14320 are separated by 152 nucleotidesEX31_RS14320 and EX31_RS14325 overlap by 4 nucleotidesEX31_RS14325 and EX31_RS14330 are separated by 37 nucleotidesEX31_RS14330 and EX31_RS14335 are separated by 52 nucleotides EX31_RS14315: EX31_RS14315 - periplasmic heavy metal sensor, at 45,224 to 45,733 _RS14315 EX31_RS14320: EX31_RS14320 - envelope stress response regulator transcription factor CpxR, at 45,886 to 46,587 _RS14320 EX31_RS14325: EX31_RS14325 - envelope stress sensor histidine kinase CpxA, at 46,584 to 47,954 _RS14325 EX31_RS14330: EX31_RS14330 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 47,992 to 48,465 _RS14330 EX31_RS14335: EX31_RS14335 - serine O-acetyltransferase, at 48,518 to 49,339 _RS14335 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 45.625 kb on + strand, within EX31_RS14315at 45.625 kb on + strand, within EX31_RS14315at 45.626 kb on - strand, within EX31_RS14315at 45.626 kb on - strand, within EX31_RS14315at 45.626 kb on - strand, within EX31_RS14315at 45.626 kb on - strand, within EX31_RS14315at 45.626 kb on - strand, within EX31_RS14315at 45.727 kb on + strandat 45.727 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.738 kb on + strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.745 kb on - strandat 45.754 kb on - strandat 45.786 kb on + strandat 45.820 kb on + strandat 45.820 kb on + strandat 45.820 kb on + strandat 45.820 kb on + strandat 45.821 kb on - strandat 45.830 kb on + strandat 45.830 kb on + strandat 45.830 kb on + strandat 45.830 kb on + strandat 45.831 kb on - strandat 45.831 kb on - strandat 45.831 kb on - strandat 45.861 kb on + strandat 45.861 kb on + strandat 45.861 kb on + strandat 45.862 kb on - strandat 45.872 kb on + strandat 45.878 kb on + strandat 45.878 kb on + strandat 45.882 kb on + strandat 45.882 kb on + strandat 45.882 kb on + strandat 45.883 kb on - strandat 45.902 kb on + strandat 45.902 kb on + strandat 45.998 kb on + strand, within EX31_RS14320at 46.011 kb on + strand, within EX31_RS14320at 46.110 kb on + strand, within EX31_RS14320at 46.110 kb on + strand, within EX31_RS14320at 46.136 kb on + strand, within EX31_RS14320at 46.192 kb on - strand, within EX31_RS14320at 46.304 kb on + strand, within EX31_RS14320at 46.476 kb on + strand, within EX31_RS14320at 46.588 kb on + strandat 46.589 kb on - strandat 46.599 kb on - strandat 46.607 kb on + strandat 46.607 kb on + strandat 46.607 kb on + strandat 46.607 kb on + strandat 46.608 kb on - strandat 46.640 kb on - strandat 46.640 kb on - strandat 46.654 kb on + strandat 46.654 kb on + strandat 46.655 kb on - strandat 46.655 kb on - strandat 46.655 kb on - strandat 46.658 kb on - strandat 46.688 kb on + strandat 46.897 kb on + strand, within EX31_RS14325at 46.897 kb on + strand, within EX31_RS14325at 46.897 kb on + strand, within EX31_RS14325at 46.897 kb on + strand, within EX31_RS14325at 46.898 kb on - strand, within EX31_RS14325at 46.898 kb on - strand, within EX31_RS14325at 46.898 kb on - strand, within EX31_RS14325at 46.898 kb on - strand, within EX31_RS14325at 46.898 kb on - strand, within EX31_RS14325at 46.898 kb on - strand, within EX31_RS14325at 46.901 kb on + strand, within EX31_RS14325at 46.901 kb on + strand, within EX31_RS14325at 46.901 kb on + strand, within EX31_RS14325at 47.004 kb on + strand, within EX31_RS14325at 47.005 kb on - strand, within EX31_RS14325at 47.005 kb on - strand, within EX31_RS14325at 47.157 kb on - strand, within EX31_RS14325at 47.157 kb on - strand, within EX31_RS14325at 47.157 kb on - strand, within EX31_RS14325at 47.157 kb on - strand, within EX31_RS14325at 47.290 kb on + strand, within EX31_RS14325at 47.290 kb on + strand, within EX31_RS14325at 47.291 kb on - strand, within EX31_RS14325at 47.291 kb on - strand, within EX31_RS14325at 47.291 kb on - strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.332 kb on + strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.333 kb on - strand, within EX31_RS14325at 47.337 kb on - strand, within EX31_RS14325at 47.337 kb on - strand, within EX31_RS14325at 47.464 kb on + strand, within EX31_RS14325at 47.481 kb on - strand, within EX31_RS14325at 47.481 kb on - strand, within EX31_RS14325at 47.481 kb on - strand, within EX31_RS14325at 47.492 kb on - strand, within EX31_RS14325at 47.492 kb on - strand, within EX31_RS14325at 47.727 kb on - strand, within EX31_RS14325at 47.887 kb on + strandat 47.888 kb on - strandat 47.888 kb on - strandat 47.963 kb on + strandat 47.964 kb on - strandat 47.978 kb on + strandat 47.979 kb on - strandat 47.997 kb on + strandat 47.997 kb on + strandat 47.997 kb on + strandat 47.997 kb on + strandat 47.997 kb on + strandat 47.998 kb on - strandat 47.998 kb on - strandat 47.998 kb on - strandat 47.998 kb on - strandat 48.008 kb on + strandat 48.008 kb on + strandat 48.009 kb on - strandat 48.143 kb on - strand, within EX31_RS14330at 48.143 kb on - strand, within EX31_RS14330at 48.159 kb on + strand, within EX31_RS14330at 48.160 kb on - strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.161 kb on + strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.162 kb on - strand, within EX31_RS14330at 48.178 kb on + strand, within EX31_RS14330at 48.178 kb on + strand, within EX31_RS14330at 48.178 kb on + strand, within EX31_RS14330at 48.178 kb on + strand, within EX31_RS14330at 48.179 kb on - strand, within EX31_RS14330at 48.179 kb on - strand, within EX31_RS14330at 48.179 kb on - strand, within EX31_RS14330at 48.262 kb on + strand, within EX31_RS14330at 48.262 kb on + strand, within EX31_RS14330at 48.263 kb on - strand, within EX31_RS14330at 48.263 kb on - strand, within EX31_RS14330at 48.263 kb on - strand, within EX31_RS14330at 48.318 kb on + strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.319 kb on - strand, within EX31_RS14330at 48.360 kb on + strand, within EX31_RS14330at 48.361 kb on - strand, within EX31_RS14330at 48.415 kb on + strand, within EX31_RS14330at 48.415 kb on + strand, within EX31_RS14330at 48.416 kb on - strand, within EX31_RS14330at 48.416 kb on - strand, within EX31_RS14330at 48.464 kb on - strandat 48.553 kb on + strandat 48.553 kb on + strandat 48.554 kb on - strandat 48.574 kb on + strandat 48.575 kb on - strandat 48.707 kb on - strand, within EX31_RS14335at 48.707 kb on - strand, within EX31_RS14335at 48.757 kb on + strand, within EX31_RS14335at 48.788 kb on - strand, within EX31_RS14335at 48.819 kb on - strand, within EX31_RS14335at 48.910 kb on + strand, within EX31_RS14335at 48.911 kb on - strand, within EX31_RS14335at 48.914 kb on + strand, within EX31_RS14335

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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45,625 + EX31_RS14315 0.79 +0.2
45,625 + EX31_RS14315 0.79 -0.7
45,626 - EX31_RS14315 0.79 +0.8
45,626 - EX31_RS14315 0.79 -0.7
45,626 - EX31_RS14315 0.79 +0.1
45,626 - EX31_RS14315 0.79 +0.5
45,626 - EX31_RS14315 0.79 -0.3
45,727 + +0.2
45,727 + -0.3
45,738 + +0.0
45,738 + +0.3
45,738 + +0.8
45,738 + +0.5
45,738 + +0.3
45,738 + +0.8
45,738 + +0.3
45,738 + +0.3
45,738 + -0.6
45,738 + -0.5
45,739 - +0.4
45,739 - +0.8
45,739 - +0.2
45,739 - -0.8
45,739 - +0.9
45,739 - +0.0
45,739 - +0.4
45,739 - -0.1
45,745 - +0.1
45,754 - -0.1
45,786 + -0.1
45,820 + +0.3
45,820 + -0.1
45,820 + -1.3
45,820 + +0.2
45,821 - +0.5
45,830 + +0.4
45,830 + -0.6
45,830 + +0.4
45,830 + +0.2
45,831 - +1.4
45,831 - +0.5
45,831 - +0.7
45,861 + -1.4
45,861 + -0.6
45,861 + -0.2
45,862 - +0.6
45,872 + +0.9
45,878 + +0.6
45,878 + -1.6
45,882 + +3.1
45,882 + +0.7
45,882 + +3.6
45,883 - -0.6
45,902 + +0.0
45,902 + +1.4
45,998 + EX31_RS14320 0.16 +1.6
46,011 + EX31_RS14320 0.18 +0.6
46,110 + EX31_RS14320 0.32 +1.4
46,110 + EX31_RS14320 0.32 -0.7
46,136 + EX31_RS14320 0.36 +2.2
46,192 - EX31_RS14320 0.44 +1.0
46,304 + EX31_RS14320 0.60 -0.5
46,476 + EX31_RS14320 0.84 +0.2
46,588 + -0.7
46,589 - -1.4
46,599 - -3.1
46,607 + +0.1
46,607 + -0.8
46,607 + -2.0
46,607 + -1.9
46,608 - -1.8
46,640 - -0.9
46,640 - -2.0
46,654 + -0.9
46,654 + -1.2
46,655 - -2.1
46,655 - -0.7
46,655 - -1.9
46,658 - +0.4
46,688 + -1.2
46,897 + EX31_RS14325 0.23 -2.2
46,897 + EX31_RS14325 0.23 -1.5
46,897 + EX31_RS14325 0.23 -1.9
46,897 + EX31_RS14325 0.23 -0.3
46,898 - EX31_RS14325 0.23 -2.0
46,898 - EX31_RS14325 0.23 -0.4
46,898 - EX31_RS14325 0.23 -0.8
46,898 - EX31_RS14325 0.23 -0.4
46,898 - EX31_RS14325 0.23 -0.8
46,898 - EX31_RS14325 0.23 -0.1
46,901 + EX31_RS14325 0.23 -0.3
46,901 + EX31_RS14325 0.23 -2.9
46,901 + EX31_RS14325 0.23 -3.0
47,004 + EX31_RS14325 0.31 -0.3
47,005 - EX31_RS14325 0.31 -1.2
47,005 - EX31_RS14325 0.31 -1.5
47,157 - EX31_RS14325 0.42 -1.4
47,157 - EX31_RS14325 0.42 -2.6
47,157 - EX31_RS14325 0.42 -3.0
47,157 - EX31_RS14325 0.42 -1.5
47,290 + EX31_RS14325 0.51 -1.5
47,290 + EX31_RS14325 0.51 -1.5
47,291 - EX31_RS14325 0.52 -2.1
47,291 - EX31_RS14325 0.52 +0.0
47,291 - EX31_RS14325 0.52 -3.0
47,332 + EX31_RS14325 0.55 -2.4
47,332 + EX31_RS14325 0.55 -0.6
47,332 + EX31_RS14325 0.55 -0.7
47,332 + EX31_RS14325 0.55 -1.8
47,332 + EX31_RS14325 0.55 -1.4
47,332 + EX31_RS14325 0.55 -1.3
47,332 + EX31_RS14325 0.55 -0.3
47,332 + EX31_RS14325 0.55 -2.8
47,332 + EX31_RS14325 0.55 -1.2
47,332 + EX31_RS14325 0.55 -1.4
47,332 + EX31_RS14325 0.55 -0.7
47,333 - EX31_RS14325 0.55 -0.7
47,333 - EX31_RS14325 0.55 -0.9
47,333 - EX31_RS14325 0.55 -1.3
47,333 - EX31_RS14325 0.55 -1.7
47,333 - EX31_RS14325 0.55 -2.6
47,333 - EX31_RS14325 0.55 -1.9
47,333 - EX31_RS14325 0.55 -1.7
47,333 - EX31_RS14325 0.55 -1.1
47,333 - EX31_RS14325 0.55 -2.0
47,333 - EX31_RS14325 0.55 -2.7
47,333 - EX31_RS14325 0.55 -0.6
47,337 - EX31_RS14325 0.55 -2.4
47,337 - EX31_RS14325 0.55 -1.9
47,464 + EX31_RS14325 0.64 +2.6
47,481 - EX31_RS14325 0.65 -0.8
47,481 - EX31_RS14325 0.65 -1.5
47,481 - EX31_RS14325 0.65 -2.6
47,492 - EX31_RS14325 0.66 -1.2
47,492 - EX31_RS14325 0.66 -2.0
47,727 - EX31_RS14325 0.83 -0.5
47,887 + -0.8
47,888 - -0.8
47,888 - +0.2
47,963 + +0.8
47,964 - -0.6
47,978 + -0.0
47,979 - +0.2
47,997 + +0.2
47,997 + -0.2
47,997 + +1.5
47,997 + +0.2
47,997 + -1.3
47,998 - -0.1
47,998 - -1.2
47,998 - +1.1
47,998 - +0.2
48,008 + -1.2
48,008 + -0.1
48,009 - +0.6
48,143 - EX31_RS14330 0.32 -0.2
48,143 - EX31_RS14330 0.32 +0.9
48,159 + EX31_RS14330 0.35 +0.3
48,160 - EX31_RS14330 0.35 +0.9
48,161 + EX31_RS14330 0.36 +1.0
48,161 + EX31_RS14330 0.36 +0.1
48,161 + EX31_RS14330 0.36 +0.9
48,161 + EX31_RS14330 0.36 +0.3
48,161 + EX31_RS14330 0.36 +0.3
48,161 + EX31_RS14330 0.36 +0.4
48,161 + EX31_RS14330 0.36 -0.4
48,161 + EX31_RS14330 0.36 -0.5
48,161 + EX31_RS14330 0.36 -0.2
48,161 + EX31_RS14330 0.36 -0.3
48,161 + EX31_RS14330 0.36 +0.4
48,161 + EX31_RS14330 0.36 -0.2
48,161 + EX31_RS14330 0.36 -0.6
48,161 + EX31_RS14330 0.36 -2.2
48,161 + EX31_RS14330 0.36 -0.6
48,161 + EX31_RS14330 0.36 +0.0
48,161 + EX31_RS14330 0.36 +1.4
48,161 + EX31_RS14330 0.36 -0.3
48,161 + EX31_RS14330 0.36 -0.8
48,162 - EX31_RS14330 0.36 -0.3
48,162 - EX31_RS14330 0.36 -0.1
48,162 - EX31_RS14330 0.36 -0.4
48,162 - EX31_RS14330 0.36 -0.2
48,162 - EX31_RS14330 0.36 -0.3
48,162 - EX31_RS14330 0.36 +0.0
48,162 - EX31_RS14330 0.36 -2.5
48,162 - EX31_RS14330 0.36 +1.3
48,162 - EX31_RS14330 0.36 +0.2
48,162 - EX31_RS14330 0.36 -0.1
48,162 - EX31_RS14330 0.36 -0.1
48,162 - EX31_RS14330 0.36 -1.2
48,162 - EX31_RS14330 0.36 +1.2
48,162 - EX31_RS14330 0.36 -0.0
48,178 + EX31_RS14330 0.39 -0.2
48,178 + EX31_RS14330 0.39 +0.3
48,178 + EX31_RS14330 0.39 -1.3
48,178 + EX31_RS14330 0.39 -0.2
48,179 - EX31_RS14330 0.39 +1.0
48,179 - EX31_RS14330 0.39 +1.0
48,179 - EX31_RS14330 0.39 -0.5
48,262 + EX31_RS14330 0.57 +0.9
48,262 + EX31_RS14330 0.57 +0.1
48,263 - EX31_RS14330 0.57 -0.1
48,263 - EX31_RS14330 0.57 -1.3
48,263 - EX31_RS14330 0.57 -0.4
48,318 + EX31_RS14330 0.69 -1.0
48,319 - EX31_RS14330 0.69 -0.2
48,319 - EX31_RS14330 0.69 +0.2
48,319 - EX31_RS14330 0.69 -0.4
48,319 - EX31_RS14330 0.69 +0.5
48,319 - EX31_RS14330 0.69 -0.4
48,360 + EX31_RS14330 0.78 -1.0
48,361 - EX31_RS14330 0.78 +0.4
48,415 + EX31_RS14330 0.89 -1.6
48,415 + EX31_RS14330 0.89 +0.0
48,416 - EX31_RS14330 0.89 +0.2
48,416 - EX31_RS14330 0.89 -0.8
48,464 - -0.1
48,553 + -3.5
48,553 + -2.8
48,554 - +0.2
48,574 + -1.7
48,575 - +0.0
48,707 - EX31_RS14335 0.23 +1.0
48,707 - EX31_RS14335 0.23 -0.6
48,757 + EX31_RS14335 0.29 +1.6
48,788 - EX31_RS14335 0.33 +0.6
48,819 - EX31_RS14335 0.37 -0.2
48,910 + EX31_RS14335 0.48 +0.3
48,911 - EX31_RS14335 0.48 +0.3
48,914 + EX31_RS14335 0.48 -0.7

Or see this region's nucleotide sequence