Strain Fitness in Rahnella sp. WP5 around EX31_RS10535

Experiment: L-Glutamine (N); ShewMM media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS10530 and EX31_RS10535 are separated by 744 nucleotidesEX31_RS10535 and EX31_RS10540 overlap by 1 nucleotidesEX31_RS10540 and EX31_RS10545 are separated by 1 nucleotides EX31_RS10530: EX31_RS10530 - anti-adapter protein IraP, at 20,394 to 20,735 _RS10530 EX31_RS10535: EX31_RS10535 - GtrA family protein, at 21,480 to 21,839 _RS10535 EX31_RS10540: EX31_RS10540 - glycosyltransferase family 2 protein, at 21,839 to 22,756 _RS10540 EX31_RS10545: EX31_RS10545 - hypothetical protein, at 22,758 to 24,011 _RS10545 Position (kb) 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 20.498 kb on + strand, within EX31_RS10530at 20.598 kb on - strand, within EX31_RS10530at 20.598 kb on - strand, within EX31_RS10530at 20.598 kb on - strand, within EX31_RS10530at 20.598 kb on - strand, within EX31_RS10530at 20.609 kb on + strand, within EX31_RS10530at 20.733 kb on + strandat 20.738 kb on + strandat 20.738 kb on + strandat 20.751 kb on + strandat 20.831 kb on - strandat 20.831 kb on - strandat 20.880 kb on - strandat 20.899 kb on + strandat 20.934 kb on + strandat 21.127 kb on + strandat 21.183 kb on + strandat 21.183 kb on + strandat 21.184 kb on - strandat 21.184 kb on - strandat 21.223 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.253 kb on + strandat 21.254 kb on - strandat 21.256 kb on - strandat 21.256 kb on - strandat 21.256 kb on - strandat 21.256 kb on - strandat 21.256 kb on - strandat 21.283 kb on - strandat 21.320 kb on + strandat 21.320 kb on + strandat 21.321 kb on - strandat 21.321 kb on - strandat 21.321 kb on - strandat 21.321 kb on - strandat 21.321 kb on - strandat 21.397 kb on - strandat 21.430 kb on + strandat 21.431 kb on - strandat 21.431 kb on - strandat 21.473 kb on + strandat 21.475 kb on + strandat 21.475 kb on + strandat 21.510 kb on - strandat 21.556 kb on + strand, within EX31_RS10535at 21.666 kb on - strand, within EX31_RS10535at 21.784 kb on + strand, within EX31_RS10535at 21.855 kb on + strandat 21.970 kb on + strand, within EX31_RS10540at 22.182 kb on + strand, within EX31_RS10540at 22.198 kb on + strand, within EX31_RS10540at 22.199 kb on - strand, within EX31_RS10540at 22.255 kb on + strand, within EX31_RS10540at 22.255 kb on + strand, within EX31_RS10540at 22.255 kb on + strand, within EX31_RS10540at 22.263 kb on + strand, within EX31_RS10540at 22.263 kb on + strand, within EX31_RS10540at 22.263 kb on + strand, within EX31_RS10540at 22.263 kb on + strand, within EX31_RS10540at 22.330 kb on + strand, within EX31_RS10540at 22.333 kb on + strand, within EX31_RS10540at 22.333 kb on + strand, within EX31_RS10540at 22.410 kb on - strand, within EX31_RS10540at 22.411 kb on + strand, within EX31_RS10540at 22.411 kb on + strand, within EX31_RS10540at 22.411 kb on + strand, within EX31_RS10540at 22.510 kb on + strand, within EX31_RS10540at 22.523 kb on + strand, within EX31_RS10540at 22.523 kb on + strand, within EX31_RS10540at 22.523 kb on + strand, within EX31_RS10540at 22.523 kb on + strand, within EX31_RS10540at 22.524 kb on - strand, within EX31_RS10540at 22.524 kb on - strand, within EX31_RS10540at 22.548 kb on + strand, within EX31_RS10540at 22.578 kb on + strand, within EX31_RS10540at 22.578 kb on + strand, within EX31_RS10540at 22.579 kb on - strand, within EX31_RS10540at 22.582 kb on + strand, within EX31_RS10540at 22.588 kb on + strand, within EX31_RS10540at 22.588 kb on + strand, within EX31_RS10540at 22.588 kb on + strand, within EX31_RS10540at 22.588 kb on + strand, within EX31_RS10540at 22.588 kb on + strand, within EX31_RS10540at 22.589 kb on - strand, within EX31_RS10540at 22.589 kb on - strand, within EX31_RS10540at 22.590 kb on + strand, within EX31_RS10540at 22.621 kb on + strand, within EX31_RS10540at 22.651 kb on + strand, within EX31_RS10540at 22.687 kb on + strandat 22.690 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
remove
20,498 + EX31_RS10530 0.30 +1.0
20,598 - EX31_RS10530 0.60 +0.8
20,598 - EX31_RS10530 0.60 -0.8
20,598 - EX31_RS10530 0.60 +0.7
20,598 - EX31_RS10530 0.60 +0.9
20,609 + EX31_RS10530 0.63 +2.2
20,733 + -1.6
20,738 + +0.3
20,738 + -0.5
20,751 + +1.3
20,831 - +0.5
20,831 - -0.2
20,880 - +0.0
20,899 + +0.2
20,934 + +1.2
21,127 + -1.0
21,183 + +0.6
21,183 + +0.8
21,184 - +0.2
21,184 - -0.4
21,223 - -0.3
21,225 - +0.2
21,225 - +0.6
21,225 - -0.9
21,225 - +0.1
21,225 - -0.5
21,225 - +0.6
21,253 + +0.5
21,254 - -0.5
21,256 - +0.2
21,256 - -0.7
21,256 - +0.6
21,256 - +0.7
21,256 - -1.1
21,283 - -0.6
21,320 + +0.2
21,320 + -0.5
21,321 - +1.0
21,321 - -1.0
21,321 - +0.9
21,321 - +0.5
21,321 - -0.6
21,397 - +1.0
21,430 + +1.4
21,431 - +2.2
21,431 - -0.3
21,473 + -0.3
21,475 + +0.1
21,475 + -1.3
21,510 - +0.2
21,556 + EX31_RS10535 0.21 -0.4
21,666 - EX31_RS10535 0.52 -0.1
21,784 + EX31_RS10535 0.84 +0.3
21,855 + +0.7
21,970 + EX31_RS10540 0.14 +1.4
22,182 + EX31_RS10540 0.37 +0.6
22,198 + EX31_RS10540 0.39 +1.6
22,199 - EX31_RS10540 0.39 +0.6
22,255 + EX31_RS10540 0.45 +1.7
22,255 + EX31_RS10540 0.45 +0.8
22,255 + EX31_RS10540 0.45 -0.2
22,263 + EX31_RS10540 0.46 +0.9
22,263 + EX31_RS10540 0.46 +0.7
22,263 + EX31_RS10540 0.46 +1.7
22,263 + EX31_RS10540 0.46 -0.8
22,330 + EX31_RS10540 0.53 -0.4
22,333 + EX31_RS10540 0.54 +0.7
22,333 + EX31_RS10540 0.54 +0.2
22,410 - EX31_RS10540 0.62 +0.2
22,411 + EX31_RS10540 0.62 +2.2
22,411 + EX31_RS10540 0.62 -0.1
22,411 + EX31_RS10540 0.62 +1.8
22,510 + EX31_RS10540 0.73 -0.4
22,523 + EX31_RS10540 0.75 +0.6
22,523 + EX31_RS10540 0.75 +1.0
22,523 + EX31_RS10540 0.75 +0.4
22,523 + EX31_RS10540 0.75 +0.6
22,524 - EX31_RS10540 0.75 +1.2
22,524 - EX31_RS10540 0.75 -1.0
22,548 + EX31_RS10540 0.77 -1.3
22,578 + EX31_RS10540 0.81 +2.0
22,578 + EX31_RS10540 0.81 -0.0
22,579 - EX31_RS10540 0.81 +0.3
22,582 + EX31_RS10540 0.81 +0.4
22,588 + EX31_RS10540 0.82 +1.4
22,588 + EX31_RS10540 0.82 +1.4
22,588 + EX31_RS10540 0.82 -1.9
22,588 + EX31_RS10540 0.82 +0.8
22,588 + EX31_RS10540 0.82 +0.1
22,589 - EX31_RS10540 0.82 +1.2
22,589 - EX31_RS10540 0.82 +2.2
22,590 + EX31_RS10540 0.82 +2.2
22,621 + EX31_RS10540 0.85 -0.3
22,651 + EX31_RS10540 0.88 +0.2
22,687 + -1.0
22,690 - -0.3

Or see this region's nucleotide sequence