Strain Fitness in Rahnella sp. WP5 around EX31_RS09810

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09805 and EX31_RS09810 are separated by 112 nucleotidesEX31_RS09810 and EX31_RS09815 are separated by 58 nucleotides EX31_RS09805: EX31_RS09805 - transcriptional regulator LsrR, at 167,349 to 168,323 _RS09805 EX31_RS09810: EX31_RS09810 - autoinducer-2 kinase, at 168,436 to 169,986 _RS09810 EX31_RS09815: EX31_RS09815 - 2-keto-3-deoxygluconate transporter, at 170,045 to 171,043 _RS09815 Position (kb) 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 167.439 kb on + strandat 167.439 kb on + strandat 167.439 kb on + strandat 167.442 kb on + strandat 167.555 kb on + strand, within EX31_RS09805at 167.555 kb on + strand, within EX31_RS09805at 167.556 kb on - strand, within EX31_RS09805at 167.753 kb on + strand, within EX31_RS09805at 167.753 kb on + strand, within EX31_RS09805at 167.754 kb on - strand, within EX31_RS09805at 167.829 kb on + strand, within EX31_RS09805at 167.831 kb on + strand, within EX31_RS09805at 167.831 kb on + strand, within EX31_RS09805at 167.831 kb on + strand, within EX31_RS09805at 167.832 kb on - strand, within EX31_RS09805at 167.876 kb on + strand, within EX31_RS09805at 167.936 kb on + strand, within EX31_RS09805at 167.936 kb on + strand, within EX31_RS09805at 167.937 kb on - strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.976 kb on - strand, within EX31_RS09805at 168.039 kb on + strand, within EX31_RS09805at 168.202 kb on + strand, within EX31_RS09805at 168.266 kb on + strandat 168.266 kb on + strandat 168.267 kb on - strandat 168.277 kb on + strandat 168.335 kb on + strandat 168.335 kb on + strandat 168.369 kb on + strandat 168.430 kb on + strandat 168.431 kb on - strandat 168.688 kb on + strand, within EX31_RS09810at 168.849 kb on - strand, within EX31_RS09810at 168.894 kb on + strand, within EX31_RS09810at 168.897 kb on + strand, within EX31_RS09810at 168.897 kb on + strand, within EX31_RS09810at 168.897 kb on + strand, within EX31_RS09810at 168.897 kb on + strand, within EX31_RS09810at 168.898 kb on - strand, within EX31_RS09810at 168.987 kb on - strand, within EX31_RS09810at 169.043 kb on + strand, within EX31_RS09810at 169.043 kb on + strand, within EX31_RS09810at 169.043 kb on + strand, within EX31_RS09810at 169.043 kb on + strand, within EX31_RS09810at 169.043 kb on + strand, within EX31_RS09810at 169.044 kb on - strand, within EX31_RS09810at 169.044 kb on - strand, within EX31_RS09810at 169.082 kb on - strand, within EX31_RS09810at 169.414 kb on + strand, within EX31_RS09810at 169.414 kb on + strand, within EX31_RS09810at 169.414 kb on + strand, within EX31_RS09810at 169.415 kb on - strand, within EX31_RS09810at 169.415 kb on - strand, within EX31_RS09810at 169.415 kb on - strand, within EX31_RS09810at 169.415 kb on - strand, within EX31_RS09810at 169.507 kb on + strand, within EX31_RS09810at 169.508 kb on - strand, within EX31_RS09810at 169.583 kb on + strand, within EX31_RS09810at 169.614 kb on + strand, within EX31_RS09810at 169.614 kb on + strand, within EX31_RS09810at 169.694 kb on + strand, within EX31_RS09810at 169.694 kb on + strand, within EX31_RS09810at 169.694 kb on + strand, within EX31_RS09810at 169.695 kb on - strand, within EX31_RS09810at 169.695 kb on - strand, within EX31_RS09810at 169.804 kb on + strand, within EX31_RS09810at 169.805 kb on - strand, within EX31_RS09810at 169.856 kb on - strandat 169.885 kb on + strandat 169.918 kb on + strandat 169.919 kb on - strandat 170.448 kb on - strand, within EX31_RS09815at 170.668 kb on - strand, within EX31_RS09815at 170.827 kb on + strand, within EX31_RS09815at 170.828 kb on - strand, within EX31_RS09815at 170.896 kb on + strand, within EX31_RS09815at 170.897 kb on - strand, within EX31_RS09815at 170.897 kb on - strand, within EX31_RS09815at 170.897 kb on - strand, within EX31_RS09815at 170.900 kb on + strand, within EX31_RS09815

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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167,439 + +0.0
167,439 + +0.6
167,439 + -1.4
167,442 + +0.1
167,555 + EX31_RS09805 0.21 -0.4
167,555 + EX31_RS09805 0.21 -0.7
167,556 - EX31_RS09805 0.21 +0.3
167,753 + EX31_RS09805 0.41 +0.4
167,753 + EX31_RS09805 0.41 +0.2
167,754 - EX31_RS09805 0.42 -0.4
167,829 + EX31_RS09805 0.49 +1.4
167,831 + EX31_RS09805 0.49 +0.3
167,831 + EX31_RS09805 0.49 -0.8
167,831 + EX31_RS09805 0.49 +0.2
167,832 - EX31_RS09805 0.50 +0.0
167,876 + EX31_RS09805 0.54 -0.1
167,936 + EX31_RS09805 0.60 +0.3
167,936 + EX31_RS09805 0.60 +0.3
167,937 - EX31_RS09805 0.60 -0.3
167,941 + EX31_RS09805 0.61 -0.2
167,941 + EX31_RS09805 0.61 +0.3
167,941 + EX31_RS09805 0.61 +0.4
167,941 + EX31_RS09805 0.61 -1.4
167,941 + EX31_RS09805 0.61 +1.0
167,941 + EX31_RS09805 0.61 +1.0
167,976 - EX31_RS09805 0.64 -0.3
168,039 + EX31_RS09805 0.71 +0.1
168,202 + EX31_RS09805 0.87 -1.7
168,266 + +0.2
168,266 + +0.1
168,267 - +2.0
168,277 + +1.2
168,335 + -1.4
168,335 + -0.4
168,369 + -0.6
168,430 + +0.3
168,431 - +0.4
168,688 + EX31_RS09810 0.16 -0.0
168,849 - EX31_RS09810 0.27 -1.3
168,894 + EX31_RS09810 0.30 +0.0
168,897 + EX31_RS09810 0.30 +0.0
168,897 + EX31_RS09810 0.30 -1.4
168,897 + EX31_RS09810 0.30 -0.4
168,897 + EX31_RS09810 0.30 +0.4
168,898 - EX31_RS09810 0.30 +1.3
168,987 - EX31_RS09810 0.36 +1.0
169,043 + EX31_RS09810 0.39 +2.0
169,043 + EX31_RS09810 0.39 -0.6
169,043 + EX31_RS09810 0.39 +1.0
169,043 + EX31_RS09810 0.39 -1.3
169,043 + EX31_RS09810 0.39 -0.3
169,044 - EX31_RS09810 0.39 -0.3
169,044 - EX31_RS09810 0.39 +0.8
169,082 - EX31_RS09810 0.42 -1.0
169,414 + EX31_RS09810 0.63 -1.4
169,414 + EX31_RS09810 0.63 +0.3
169,414 + EX31_RS09810 0.63 +0.3
169,415 - EX31_RS09810 0.63 +2.4
169,415 - EX31_RS09810 0.63 +1.0
169,415 - EX31_RS09810 0.63 -0.6
169,415 - EX31_RS09810 0.63 -1.2
169,507 + EX31_RS09810 0.69 +0.4
169,508 - EX31_RS09810 0.69 +1.4
169,583 + EX31_RS09810 0.74 -0.1
169,614 + EX31_RS09810 0.76 +2.4
169,614 + EX31_RS09810 0.76 +1.5
169,694 + EX31_RS09810 0.81 +0.2
169,694 + EX31_RS09810 0.81 -0.7
169,694 + EX31_RS09810 0.81 -0.8
169,695 - EX31_RS09810 0.81 +0.4
169,695 - EX31_RS09810 0.81 +0.0
169,804 + EX31_RS09810 0.88 -2.3
169,805 - EX31_RS09810 0.88 -0.3
169,856 - +1.4
169,885 + -0.8
169,918 + +1.0
169,919 - -1.4
170,448 - EX31_RS09815 0.40 -1.6
170,668 - EX31_RS09815 0.62 -1.0
170,827 + EX31_RS09815 0.78 +1.1
170,828 - EX31_RS09815 0.78 -0.0
170,896 + EX31_RS09815 0.85 -1.1
170,897 - EX31_RS09815 0.85 -0.5
170,897 - EX31_RS09815 0.85 -1.4
170,897 - EX31_RS09815 0.85 +1.0
170,900 + EX31_RS09815 0.86 -1.3

Or see this region's nucleotide sequence