Strain Fitness in Rahnella sp. WP5 around EX31_RS01460

Experiment: L-Glutamine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01455 and EX31_RS01460 are separated by 122 nucleotidesEX31_RS01460 and EX31_RS01465 are separated by 292 nucleotides EX31_RS01455: EX31_RS01455 - alpha-amylase, at 327,093 to 328,574 _RS01455 EX31_RS01460: EX31_RS01460 - glycine betaine/L-proline transporter ProP, at 328,697 to 330,199 _RS01460 EX31_RS01465: EX31_RS01465 - oligogalacturonate lyase, at 330,492 to 331,673 _RS01465 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 327.746 kb on - strand, within EX31_RS01455at 327.746 kb on - strand, within EX31_RS01455at 327.746 kb on - strand, within EX31_RS01455at 327.778 kb on + strand, within EX31_RS01455at 327.793 kb on + strand, within EX31_RS01455at 327.793 kb on + strand, within EX31_RS01455at 327.794 kb on - strand, within EX31_RS01455at 327.821 kb on + strand, within EX31_RS01455at 327.822 kb on - strand, within EX31_RS01455at 327.923 kb on - strand, within EX31_RS01455at 327.985 kb on + strand, within EX31_RS01455at 328.259 kb on + strand, within EX31_RS01455at 328.260 kb on - strand, within EX31_RS01455at 328.295 kb on + strand, within EX31_RS01455at 328.296 kb on - strand, within EX31_RS01455at 328.326 kb on + strand, within EX31_RS01455at 328.327 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.400 kb on - strand, within EX31_RS01455at 328.408 kb on + strand, within EX31_RS01455at 328.441 kb on + strandat 328.442 kb on - strandat 328.442 kb on - strandat 328.442 kb on - strandat 328.538 kb on - strandat 328.538 kb on - strandat 328.538 kb on - strandat 328.563 kb on - strandat 328.609 kb on + strandat 328.610 kb on - strandat 328.886 kb on - strand, within EX31_RS01460at 328.930 kb on - strand, within EX31_RS01460at 328.930 kb on - strand, within EX31_RS01460at 328.930 kb on - strand, within EX31_RS01460at 328.933 kb on - strand, within EX31_RS01460at 328.944 kb on + strand, within EX31_RS01460at 328.944 kb on + strand, within EX31_RS01460at 328.944 kb on + strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 328.945 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.048 kb on - strand, within EX31_RS01460at 329.144 kb on + strand, within EX31_RS01460at 329.224 kb on + strand, within EX31_RS01460at 329.265 kb on - strand, within EX31_RS01460at 329.322 kb on + strand, within EX31_RS01460at 329.322 kb on + strand, within EX31_RS01460at 329.343 kb on + strand, within EX31_RS01460at 329.344 kb on - strand, within EX31_RS01460at 329.344 kb on - strand, within EX31_RS01460at 329.355 kb on + strand, within EX31_RS01460at 329.356 kb on - strand, within EX31_RS01460at 329.356 kb on - strand, within EX31_RS01460at 329.370 kb on + strand, within EX31_RS01460at 329.370 kb on + strand, within EX31_RS01460at 329.370 kb on + strand, within EX31_RS01460at 329.370 kb on + strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.371 kb on - strand, within EX31_RS01460at 329.374 kb on - strand, within EX31_RS01460at 329.550 kb on + strand, within EX31_RS01460at 329.550 kb on + strand, within EX31_RS01460at 329.646 kb on - strand, within EX31_RS01460at 329.681 kb on - strand, within EX31_RS01460at 329.681 kb on - strand, within EX31_RS01460at 329.681 kb on - strand, within EX31_RS01460at 329.702 kb on - strand, within EX31_RS01460at 329.762 kb on - strand, within EX31_RS01460at 329.762 kb on - strand, within EX31_RS01460at 329.839 kb on + strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 329.840 kb on - strand, within EX31_RS01460at 330.152 kb on - strandat 330.170 kb on - strandat 330.204 kb on + strandat 330.205 kb on - strandat 330.205 kb on - strandat 330.205 kb on - strandat 330.223 kb on - strandat 330.223 kb on - strandat 330.264 kb on - strandat 330.276 kb on + strandat 330.277 kb on - strandat 330.293 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.298 kb on + strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.299 kb on - strandat 330.300 kb on + strandat 330.301 kb on - strandat 330.306 kb on + strandat 330.307 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.309 kb on - strandat 330.319 kb on + strandat 330.320 kb on - strandat 330.320 kb on - strandat 330.476 kb on - strandat 330.601 kb on - strandat 330.601 kb on - strandat 330.675 kb on + strand, within EX31_RS01465at 330.676 kb on - strand, within EX31_RS01465at 330.679 kb on - strand, within EX31_RS01465at 330.679 kb on - strand, within EX31_RS01465at 330.679 kb on - strand, within EX31_RS01465at 330.771 kb on + strand, within EX31_RS01465at 330.771 kb on + strand, within EX31_RS01465at 330.778 kb on - strand, within EX31_RS01465at 330.780 kb on + strand, within EX31_RS01465at 330.781 kb on - strand, within EX31_RS01465at 330.798 kb on - strand, within EX31_RS01465at 330.811 kb on + strand, within EX31_RS01465at 330.844 kb on - strand, within EX31_RS01465at 330.844 kb on - strand, within EX31_RS01465

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
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327,746 - EX31_RS01455 0.44 -0.7
327,746 - EX31_RS01455 0.44 +2.3
327,746 - EX31_RS01455 0.44 +1.3
327,778 + EX31_RS01455 0.46 +1.1
327,793 + EX31_RS01455 0.47 -0.6
327,793 + EX31_RS01455 0.47 +2.5
327,794 - EX31_RS01455 0.47 -0.5
327,821 + EX31_RS01455 0.49 +1.7
327,822 - EX31_RS01455 0.49 -0.3
327,923 - EX31_RS01455 0.56 -0.2
327,985 + EX31_RS01455 0.60 +2.3
328,259 + EX31_RS01455 0.79 -0.7
328,260 - EX31_RS01455 0.79 +0.0
328,295 + EX31_RS01455 0.81 +0.4
328,296 - EX31_RS01455 0.81 +0.2
328,326 + EX31_RS01455 0.83 +0.9
328,327 - EX31_RS01455 0.83 -1.3
328,400 - EX31_RS01455 0.88 -0.0
328,400 - EX31_RS01455 0.88 -1.2
328,400 - EX31_RS01455 0.88 -1.5
328,400 - EX31_RS01455 0.88 +0.2
328,400 - EX31_RS01455 0.88 -0.4
328,408 + EX31_RS01455 0.89 -0.3
328,441 + -0.2
328,442 - -1.4
328,442 - +0.6
328,442 - -2.0
328,538 - -0.3
328,538 - +1.0
328,538 - +0.1
328,563 - +1.0
328,609 + -0.6
328,610 - -1.3
328,886 - EX31_RS01460 0.13 +0.6
328,930 - EX31_RS01460 0.16 +0.2
328,930 - EX31_RS01460 0.16 -0.9
328,930 - EX31_RS01460 0.16 +0.2
328,933 - EX31_RS01460 0.16 -0.1
328,944 + EX31_RS01460 0.16 +1.1
328,944 + EX31_RS01460 0.16 +0.1
328,944 + EX31_RS01460 0.16 +0.3
328,945 - EX31_RS01460 0.17 +1.1
328,945 - EX31_RS01460 0.17 +1.4
328,945 - EX31_RS01460 0.17 +1.6
328,945 - EX31_RS01460 0.17 +0.5
328,945 - EX31_RS01460 0.17 +1.3
329,048 - EX31_RS01460 0.23 -0.3
329,048 - EX31_RS01460 0.23 +0.1
329,048 - EX31_RS01460 0.23 -0.3
329,048 - EX31_RS01460 0.23 -0.2
329,048 - EX31_RS01460 0.23 +1.7
329,144 + EX31_RS01460 0.30 +0.9
329,224 + EX31_RS01460 0.35 +0.2
329,265 - EX31_RS01460 0.38 +3.3
329,322 + EX31_RS01460 0.42 +0.4
329,322 + EX31_RS01460 0.42 -0.6
329,343 + EX31_RS01460 0.43 -0.0
329,344 - EX31_RS01460 0.43 -0.0
329,344 - EX31_RS01460 0.43 +0.3
329,355 + EX31_RS01460 0.44 +0.3
329,356 - EX31_RS01460 0.44 -1.5
329,356 - EX31_RS01460 0.44 +0.3
329,370 + EX31_RS01460 0.45 +0.7
329,370 + EX31_RS01460 0.45 -1.0
329,370 + EX31_RS01460 0.45 +1.3
329,370 + EX31_RS01460 0.45 -1.3
329,371 - EX31_RS01460 0.45 -1.3
329,371 - EX31_RS01460 0.45 +0.4
329,371 - EX31_RS01460 0.45 +0.2
329,371 - EX31_RS01460 0.45 +0.3
329,371 - EX31_RS01460 0.45 -0.4
329,371 - EX31_RS01460 0.45 -0.2
329,374 - EX31_RS01460 0.45 -1.0
329,550 + EX31_RS01460 0.57 +2.6
329,550 + EX31_RS01460 0.57 +0.2
329,646 - EX31_RS01460 0.63 +0.0
329,681 - EX31_RS01460 0.65 +2.7
329,681 - EX31_RS01460 0.65 +0.1
329,681 - EX31_RS01460 0.65 +0.5
329,702 - EX31_RS01460 0.67 +0.3
329,762 - EX31_RS01460 0.71 +0.3
329,762 - EX31_RS01460 0.71 -0.9
329,839 + EX31_RS01460 0.76 +1.3
329,840 - EX31_RS01460 0.76 +0.2
329,840 - EX31_RS01460 0.76 +1.0
329,840 - EX31_RS01460 0.76 +1.0
329,840 - EX31_RS01460 0.76 -0.3
329,840 - EX31_RS01460 0.76 -3.0
329,840 - EX31_RS01460 0.76 +1.2
329,840 - EX31_RS01460 0.76 +1.0
329,840 - EX31_RS01460 0.76 +0.4
329,840 - EX31_RS01460 0.76 +0.0
330,152 - +0.1
330,170 - -0.5
330,204 + +1.2
330,205 - -0.0
330,205 - +1.1
330,205 - -0.2
330,223 - -0.7
330,223 - -1.1
330,264 - +1.6
330,276 + +0.7
330,277 - +1.7
330,293 + +1.0
330,298 + +1.0
330,298 + -0.0
330,298 + -1.4
330,298 + +0.2
330,298 + +2.9
330,298 + +1.0
330,299 - +0.9
330,299 - -0.6
330,299 - -1.6
330,299 - -1.5
330,299 - -0.4
330,299 - -0.8
330,299 - +1.3
330,299 - -0.8
330,299 - +1.0
330,299 - +0.4
330,299 - -1.6
330,299 - -0.9
330,299 - -1.9
330,299 - +1.0
330,299 - -0.1
330,299 - +1.5
330,299 - -0.1
330,299 - -0.7
330,299 - +0.4
330,299 - -2.0
330,299 - +0.1
330,300 + -0.9
330,301 - +1.9
330,306 + +0.6
330,307 - +0.0
330,309 - -0.3
330,309 - -0.8
330,309 - -0.7
330,309 - -0.2
330,309 - +0.3
330,309 - +0.4
330,309 - -1.4
330,309 - -1.3
330,319 + -0.0
330,320 - -0.6
330,320 - +0.5
330,476 - +2.3
330,601 - +0.3
330,601 - +1.3
330,675 + EX31_RS01465 0.15 -1.2
330,676 - EX31_RS01465 0.16 +0.3
330,679 - EX31_RS01465 0.16 +0.4
330,679 - EX31_RS01465 0.16 -0.3
330,679 - EX31_RS01465 0.16 +1.3
330,771 + EX31_RS01465 0.24 -0.0
330,771 + EX31_RS01465 0.24 -0.0
330,778 - EX31_RS01465 0.24 -1.0
330,780 + EX31_RS01465 0.24 -0.0
330,781 - EX31_RS01465 0.24 +1.3
330,798 - EX31_RS01465 0.26 -0.2
330,811 + EX31_RS01465 0.27 +1.0
330,844 - EX31_RS01465 0.30 +0.2
330,844 - EX31_RS01465 0.30 -0.3

Or see this region's nucleotide sequence