Strain Fitness in Rahnella sp. WP5 around EX31_RS00450

Experiment: L-Glutamine (N); ShewMM media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS00445 and EX31_RS00450 are separated by 211 nucleotidesEX31_RS00450 and EX31_RS00455 are separated by 95 nucleotides EX31_RS00445: EX31_RS00445 - outer membrane protein assembly factor BamA, at 95,727 to 98,150 _RS00445 EX31_RS00450: EX31_RS00450 - methionine-R-sulfoxide reductase, at 98,362 to 98,748 _RS00450 EX31_RS00455: EX31_RS00455 - efflux transporter outer membrane subunit, at 98,844 to 100,214 _RS00455 Position (kb) 98 99Strain fitness (log2 ratio) -2 -1 0 1 2 3at 97.470 kb on + strand, within EX31_RS00445at 97.470 kb on + strand, within EX31_RS00445at 97.471 kb on - strand, within EX31_RS00445at 97.473 kb on - strand, within EX31_RS00445at 97.560 kb on + strand, within EX31_RS00445at 97.560 kb on + strand, within EX31_RS00445at 97.560 kb on + strand, within EX31_RS00445at 97.564 kb on - strand, within EX31_RS00445at 97.591 kb on - strand, within EX31_RS00445at 97.683 kb on + strand, within EX31_RS00445at 97.683 kb on + strand, within EX31_RS00445at 97.696 kb on - strand, within EX31_RS00445at 97.759 kb on - strand, within EX31_RS00445at 97.788 kb on + strand, within EX31_RS00445at 97.788 kb on + strand, within EX31_RS00445at 97.789 kb on - strand, within EX31_RS00445at 97.863 kb on + strand, within EX31_RS00445at 97.863 kb on + strand, within EX31_RS00445at 97.864 kb on - strand, within EX31_RS00445at 97.864 kb on - strand, within EX31_RS00445at 97.894 kb on - strand, within EX31_RS00445at 97.910 kb on + strandat 98.012 kb on + strandat 98.012 kb on + strandat 98.012 kb on + strandat 98.012 kb on + strandat 98.013 kb on - strandat 98.013 kb on - strandat 98.013 kb on - strandat 98.013 kb on - strandat 98.174 kb on - strandat 98.225 kb on - strandat 98.277 kb on + strandat 98.277 kb on + strandat 98.279 kb on + strandat 98.303 kb on + strandat 98.355 kb on + strandat 98.379 kb on - strandat 98.456 kb on + strand, within EX31_RS00450at 98.616 kb on - strand, within EX31_RS00450at 98.670 kb on + strand, within EX31_RS00450at 98.671 kb on - strand, within EX31_RS00450at 98.672 kb on + strand, within EX31_RS00450at 98.673 kb on - strand, within EX31_RS00450at 98.782 kb on + strandat 98.782 kb on + strandat 98.784 kb on + strandat 98.784 kb on + strandat 98.784 kb on + strandat 98.785 kb on - strandat 98.785 kb on - strandat 98.785 kb on - strandat 98.789 kb on + strandat 98.790 kb on - strandat 98.795 kb on + strandat 98.795 kb on + strandat 98.796 kb on - strandat 98.796 kb on - strandat 98.796 kb on - strandat 98.796 kb on - strandat 98.796 kb on - strandat 98.796 kb on - strandat 98.810 kb on + strandat 98.838 kb on - strandat 98.838 kb on - strandat 98.845 kb on + strandat 98.989 kb on + strand, within EX31_RS00455at 99.034 kb on + strand, within EX31_RS00455at 99.034 kb on + strand, within EX31_RS00455at 99.034 kb on + strand, within EX31_RS00455at 99.034 kb on + strand, within EX31_RS00455at 99.034 kb on + strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.035 kb on - strand, within EX31_RS00455at 99.101 kb on + strand, within EX31_RS00455at 99.102 kb on - strand, within EX31_RS00455at 99.183 kb on - strand, within EX31_RS00455at 99.360 kb on - strand, within EX31_RS00455at 99.397 kb on - strand, within EX31_RS00455at 99.539 kb on - strand, within EX31_RS00455at 99.633 kb on - strand, within EX31_RS00455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); ShewMM media; no shaking
remove
97,470 + EX31_RS00445 0.72 +1.1
97,470 + EX31_RS00445 0.72 +1.3
97,471 - EX31_RS00445 0.72 +0.3
97,473 - EX31_RS00445 0.72 +0.4
97,560 + EX31_RS00445 0.76 -0.4
97,560 + EX31_RS00445 0.76 +0.4
97,560 + EX31_RS00445 0.76 +0.7
97,564 - EX31_RS00445 0.76 +2.3
97,591 - EX31_RS00445 0.77 +0.7
97,683 + EX31_RS00445 0.81 +0.7
97,683 + EX31_RS00445 0.81 +1.1
97,696 - EX31_RS00445 0.81 -1.4
97,759 - EX31_RS00445 0.84 -1.3
97,788 + EX31_RS00445 0.85 -0.6
97,788 + EX31_RS00445 0.85 -1.0
97,789 - EX31_RS00445 0.85 +0.2
97,863 + EX31_RS00445 0.88 +0.0
97,863 + EX31_RS00445 0.88 +2.0
97,864 - EX31_RS00445 0.88 -0.5
97,864 - EX31_RS00445 0.88 +1.5
97,894 - EX31_RS00445 0.89 -0.7
97,910 + +1.4
98,012 + +1.7
98,012 + +0.7
98,012 + +2.9
98,012 + -0.1
98,013 - +0.4
98,013 - -0.3
98,013 - -0.9
98,013 - +0.7
98,174 - +0.5
98,225 - -0.6
98,277 + +0.3
98,277 + -1.4
98,279 + +0.4
98,303 + +0.1
98,355 + +0.1
98,379 - +0.4
98,456 + EX31_RS00450 0.24 -1.2
98,616 - EX31_RS00450 0.66 -0.3
98,670 + EX31_RS00450 0.80 -1.1
98,671 - EX31_RS00450 0.80 +0.3
98,672 + EX31_RS00450 0.80 -1.0
98,673 - EX31_RS00450 0.80 +0.6
98,782 + -0.6
98,782 + -1.7
98,784 + +1.3
98,784 + -0.3
98,784 + -0.1
98,785 - -0.7
98,785 - -0.9
98,785 - +0.4
98,789 + +0.7
98,790 - -0.4
98,795 + +0.1
98,795 + -0.7
98,796 - -1.0
98,796 - -0.3
98,796 - +0.3
98,796 - +0.1
98,796 - +0.2
98,796 - -0.3
98,810 + +1.3
98,838 - -0.1
98,838 - +0.4
98,845 + +0.3
98,989 + EX31_RS00455 0.11 -0.8
99,034 + EX31_RS00455 0.14 -0.5
99,034 + EX31_RS00455 0.14 -2.4
99,034 + EX31_RS00455 0.14 +1.4
99,034 + EX31_RS00455 0.14 +0.3
99,034 + EX31_RS00455 0.14 -0.7
99,035 - EX31_RS00455 0.14 +0.3
99,035 - EX31_RS00455 0.14 -0.2
99,035 - EX31_RS00455 0.14 +0.7
99,035 - EX31_RS00455 0.14 +0.1
99,035 - EX31_RS00455 0.14 +0.8
99,035 - EX31_RS00455 0.14 -1.8
99,035 - EX31_RS00455 0.14 -1.3
99,035 - EX31_RS00455 0.14 -0.2
99,035 - EX31_RS00455 0.14 +1.3
99,101 + EX31_RS00455 0.19 -1.4
99,102 - EX31_RS00455 0.19 -0.2
99,183 - EX31_RS00455 0.25 -1.1
99,360 - EX31_RS00455 0.38 -0.9
99,397 - EX31_RS00455 0.40 -0.7
99,539 - EX31_RS00455 0.51 -0.2
99,633 - EX31_RS00455 0.58 +2.3

Or see this region's nucleotide sequence