Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03834 and CCNA_03835 are separated by 12 nucleotides CCNA_03835 and CCNA_03836 are separated by 70 nucleotides CCNA_03836 and CCNA_03837 are separated by 70 nucleotides
CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665
_03834
CCNA_03835: CCNA_03835 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 4,000,678 to 4,001,889
_03835
CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472
_03836
CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088
_03837
Position (kb)
4000
4001
4002 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3999.682 kb on - strand, within CCNA_03834 at 3999.723 kb on - strand, within CCNA_03834 at 3999.756 kb on - strand, within CCNA_03834 at 3999.782 kb on - strand, within CCNA_03834 at 3999.847 kb on + strand, within CCNA_03834 at 3999.847 kb on + strand, within CCNA_03834 at 3999.855 kb on - strand, within CCNA_03834 at 3999.867 kb on - strand, within CCNA_03834 at 3999.900 kb on + strand, within CCNA_03834 at 3999.970 kb on + strand, within CCNA_03834 at 3999.992 kb on + strand, within CCNA_03834 at 3999.995 kb on - strand, within CCNA_03834 at 4000.025 kb on - strand, within CCNA_03834 at 4000.034 kb on + strand, within CCNA_03834 at 4000.035 kb on - strand, within CCNA_03834 at 4000.042 kb on + strand, within CCNA_03834 at 4000.044 kb on - strand, within CCNA_03834 at 4000.070 kb on + strand, within CCNA_03834 at 4000.073 kb on - strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.085 kb on + strand, within CCNA_03834 at 4000.090 kb on + strand, within CCNA_03834 at 4000.090 kb on + strand, within CCNA_03834 at 4000.090 kb on + strand, within CCNA_03834 at 4000.090 kb on + strand, within CCNA_03834 at 4000.098 kb on - strand, within CCNA_03834 at 4000.098 kb on - strand, within CCNA_03834 at 4000.098 kb on - strand, within CCNA_03834 at 4000.120 kb on + strand, within CCNA_03834 at 4000.136 kb on - strand, within CCNA_03834 at 4000.143 kb on + strand, within CCNA_03834 at 4000.143 kb on + strand at 4000.143 kb on + strand, within CCNA_03834 at 4000.151 kb on - strand, within CCNA_03834 at 4000.164 kb on + strand, within CCNA_03834 at 4000.178 kb on - strand, within CCNA_03834 at 4000.178 kb on - strand, within CCNA_03834 at 4000.187 kb on + strand, within CCNA_03834 at 4000.231 kb on + strand, within CCNA_03834 at 4000.231 kb on + strand, within CCNA_03834 at 4000.253 kb on + strand, within CCNA_03834 at 4000.359 kb on - strand, within CCNA_03834 at 4000.411 kb on + strand, within CCNA_03834 at 4000.429 kb on + strand, within CCNA_03834 at 4000.431 kb on - strand, within CCNA_03834 at 4000.453 kb on - strand, within CCNA_03834 at 4000.477 kb on + strand, within CCNA_03834 at 4000.485 kb on - strand, within CCNA_03834 at 4000.485 kb on - strand, within CCNA_03834 at 4000.485 kb on - strand, within CCNA_03834 at 4000.503 kb on - strand at 4000.504 kb on + strand at 4000.526 kb on - strand at 4000.533 kb on - strand at 4000.538 kb on - strand at 4000.538 kb on - strand at 4000.563 kb on + strand at 4000.578 kb on - strand at 4000.638 kb on + strand at 4000.639 kb on + strand at 4000.675 kb on + strand at 4000.676 kb on + strand at 4001.127 kb on - strand, within CCNA_03835 at 4001.127 kb on - strand, within CCNA_03835 at 4001.140 kb on - strand, within CCNA_03835 at 4001.170 kb on - strand, within CCNA_03835 at 4001.330 kb on - strand, within CCNA_03835 at 4001.494 kb on - strand, within CCNA_03835 at 4001.494 kb on - strand, within CCNA_03835 at 4001.494 kb on - strand, within CCNA_03835 at 4001.494 kb on - strand, within CCNA_03835 at 4001.736 kb on - strand, within CCNA_03835 at 4001.919 kb on - strand at 4001.931 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on - strand at 4001.939 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.958 kb on + strand at 4001.984 kb on - strand at 4001.984 kb on - strand at 4002.509 kb on + strand at 4002.517 kb on - strand at 4002.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 3,999,682 - CCNA_03834 0.45 +0.8 3,999,723 - CCNA_03834 0.47 +0.7 3,999,756 - CCNA_03834 0.49 -0.4 3,999,782 - CCNA_03834 0.51 +0.0 3,999,847 + CCNA_03834 0.54 -0.2 3,999,847 + CCNA_03834 0.54 -1.0 3,999,855 - CCNA_03834 0.55 -2.0 3,999,867 - CCNA_03834 0.55 -0.8 3,999,900 + CCNA_03834 0.57 +0.0 3,999,970 + CCNA_03834 0.61 +0.0 3,999,992 + CCNA_03834 0.62 +0.2 3,999,995 - CCNA_03834 0.63 -0.7 4,000,025 - CCNA_03834 0.64 +0.4 4,000,034 + CCNA_03834 0.65 +0.1 4,000,035 - CCNA_03834 0.65 +0.5 4,000,042 + CCNA_03834 0.65 +0.0 4,000,044 - CCNA_03834 0.65 +0.0 4,000,070 + CCNA_03834 0.67 +0.4 4,000,073 - CCNA_03834 0.67 +0.1 4,000,076 + CCNA_03834 0.67 +0.1 4,000,076 + CCNA_03834 0.67 -1.5 4,000,076 + CCNA_03834 0.67 -0.9 4,000,076 + CCNA_03834 0.67 -1.5 4,000,076 + CCNA_03834 0.67 +0.8 4,000,076 + CCNA_03834 0.67 -0.4 4,000,076 + CCNA_03834 0.67 +0.2 4,000,076 + CCNA_03834 0.67 +0.2 4,000,076 + CCNA_03834 0.67 +0.1 4,000,076 + CCNA_03834 0.67 -0.1 4,000,076 + CCNA_03834 0.67 +0.5 4,000,084 - CCNA_03834 0.68 +1.5 4,000,084 - CCNA_03834 0.68 +1.2 4,000,085 + CCNA_03834 0.68 +1.7 4,000,090 + CCNA_03834 0.68 +0.8 4,000,090 + CCNA_03834 0.68 +0.2 4,000,090 + CCNA_03834 0.68 +0.7 4,000,090 + CCNA_03834 0.68 +0.3 4,000,098 - CCNA_03834 0.68 -1.6 4,000,098 - CCNA_03834 0.68 -0.3 4,000,098 - CCNA_03834 0.68 +0.6 4,000,120 + CCNA_03834 0.70 -1.3 4,000,136 - CCNA_03834 0.70 -1.8 4,000,143 + CCNA_03834 0.71 -0.9 4,000,143 + +1.2 4,000,143 + CCNA_03834 0.71 +0.2 4,000,151 - CCNA_03834 0.71 -0.2 4,000,164 + CCNA_03834 0.72 -0.4 4,000,178 - CCNA_03834 0.73 +0.3 4,000,178 - CCNA_03834 0.73 -0.7 4,000,187 + CCNA_03834 0.73 -0.4 4,000,231 + CCNA_03834 0.76 +0.2 4,000,231 + CCNA_03834 0.76 -0.1 4,000,253 + CCNA_03834 0.77 -0.2 4,000,359 - CCNA_03834 0.83 +1.4 4,000,411 + CCNA_03834 0.86 +0.5 4,000,429 + CCNA_03834 0.87 +0.4 4,000,431 - CCNA_03834 0.87 +0.6 4,000,453 - CCNA_03834 0.88 +1.6 4,000,477 + CCNA_03834 0.89 +1.1 4,000,485 - CCNA_03834 0.90 +1.7 4,000,485 - CCNA_03834 0.90 +2.8 4,000,485 - CCNA_03834 0.90 +1.1 4,000,503 - +2.4 4,000,504 + -1.1 4,000,526 - +0.2 4,000,533 - +1.3 4,000,538 - +0.7 4,000,538 - +0.9 4,000,563 + -0.1 4,000,578 - +0.5 4,000,638 + -2.9 4,000,639 + -0.6 4,000,675 + +0.5 4,000,676 + -1.4 4,001,127 - CCNA_03835 0.37 -0.4 4,001,127 - CCNA_03835 0.37 -1.2 4,001,140 - CCNA_03835 0.38 -1.7 4,001,170 - CCNA_03835 0.41 -2.9 4,001,330 - CCNA_03835 0.54 -3.7 4,001,494 - CCNA_03835 0.67 -0.1 4,001,494 - CCNA_03835 0.67 -1.7 4,001,494 - CCNA_03835 0.67 -2.5 4,001,494 - CCNA_03835 0.67 -1.4 4,001,736 - CCNA_03835 0.87 -1.2 4,001,919 - +1.0 4,001,931 + -1.2 4,001,934 + -2.6 4,001,934 - +5.6 4,001,939 - +2.1 4,001,942 - +1.2 4,001,942 - +2.2 4,001,958 + -1.9 4,001,984 - +1.5 4,001,984 - +2.3 4,002,509 + -2.0 4,002,517 - -0.2 4,002,532 - -0.6
Or see this region's nucleotide sequence