Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03835

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03834 and CCNA_03835 are separated by 12 nucleotidesCCNA_03835 and CCNA_03836 are separated by 70 nucleotidesCCNA_03836 and CCNA_03837 are separated by 70 nucleotides CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665 _03834 CCNA_03835: CCNA_03835 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 4,000,678 to 4,001,889 _03835 CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472 _03836 CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088 _03837 Position (kb) 4000 4001 4002Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3999.682 kb on - strand, within CCNA_03834at 3999.723 kb on - strand, within CCNA_03834at 3999.756 kb on - strand, within CCNA_03834at 3999.782 kb on - strand, within CCNA_03834at 3999.847 kb on + strand, within CCNA_03834at 3999.847 kb on + strand, within CCNA_03834at 3999.855 kb on - strand, within CCNA_03834at 3999.867 kb on - strand, within CCNA_03834at 3999.900 kb on + strand, within CCNA_03834at 3999.970 kb on + strand, within CCNA_03834at 3999.992 kb on + strand, within CCNA_03834at 3999.995 kb on - strand, within CCNA_03834at 4000.025 kb on - strand, within CCNA_03834at 4000.034 kb on + strand, within CCNA_03834at 4000.035 kb on - strand, within CCNA_03834at 4000.042 kb on + strand, within CCNA_03834at 4000.044 kb on - strand, within CCNA_03834at 4000.070 kb on + strand, within CCNA_03834at 4000.073 kb on - strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.076 kb on + strand, within CCNA_03834at 4000.084 kb on - strand, within CCNA_03834at 4000.084 kb on - strand, within CCNA_03834at 4000.085 kb on + strand, within CCNA_03834at 4000.090 kb on + strand, within CCNA_03834at 4000.090 kb on + strand, within CCNA_03834at 4000.090 kb on + strand, within CCNA_03834at 4000.090 kb on + strand, within CCNA_03834at 4000.098 kb on - strand, within CCNA_03834at 4000.098 kb on - strand, within CCNA_03834at 4000.098 kb on - strand, within CCNA_03834at 4000.120 kb on + strand, within CCNA_03834at 4000.136 kb on - strand, within CCNA_03834at 4000.143 kb on + strand, within CCNA_03834at 4000.143 kb on + strandat 4000.143 kb on + strand, within CCNA_03834at 4000.151 kb on - strand, within CCNA_03834at 4000.164 kb on + strand, within CCNA_03834at 4000.178 kb on - strand, within CCNA_03834at 4000.178 kb on - strand, within CCNA_03834at 4000.187 kb on + strand, within CCNA_03834at 4000.231 kb on + strand, within CCNA_03834at 4000.231 kb on + strand, within CCNA_03834at 4000.253 kb on + strand, within CCNA_03834at 4000.359 kb on - strand, within CCNA_03834at 4000.411 kb on + strand, within CCNA_03834at 4000.429 kb on + strand, within CCNA_03834at 4000.431 kb on - strand, within CCNA_03834at 4000.453 kb on - strand, within CCNA_03834at 4000.477 kb on + strand, within CCNA_03834at 4000.485 kb on - strand, within CCNA_03834at 4000.485 kb on - strand, within CCNA_03834at 4000.485 kb on - strand, within CCNA_03834at 4000.503 kb on - strandat 4000.504 kb on + strandat 4000.526 kb on - strandat 4000.533 kb on - strandat 4000.538 kb on - strandat 4000.538 kb on - strandat 4000.563 kb on + strandat 4000.578 kb on - strandat 4000.638 kb on + strandat 4000.639 kb on + strandat 4000.675 kb on + strandat 4000.676 kb on + strandat 4001.127 kb on - strand, within CCNA_03835at 4001.127 kb on - strand, within CCNA_03835at 4001.140 kb on - strand, within CCNA_03835at 4001.170 kb on - strand, within CCNA_03835at 4001.330 kb on - strand, within CCNA_03835at 4001.494 kb on - strand, within CCNA_03835at 4001.494 kb on - strand, within CCNA_03835at 4001.494 kb on - strand, within CCNA_03835at 4001.494 kb on - strand, within CCNA_03835at 4001.736 kb on - strand, within CCNA_03835at 4001.919 kb on - strandat 4001.931 kb on + strandat 4001.934 kb on + strandat 4001.934 kb on - strandat 4001.939 kb on - strandat 4001.942 kb on - strandat 4001.942 kb on - strandat 4001.958 kb on + strandat 4001.984 kb on - strandat 4001.984 kb on - strandat 4002.509 kb on + strandat 4002.517 kb on - strandat 4002.532 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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3,999,682 - CCNA_03834 0.45 +0.8
3,999,723 - CCNA_03834 0.47 +0.7
3,999,756 - CCNA_03834 0.49 -0.4
3,999,782 - CCNA_03834 0.51 +0.0
3,999,847 + CCNA_03834 0.54 -0.2
3,999,847 + CCNA_03834 0.54 -1.0
3,999,855 - CCNA_03834 0.55 -2.0
3,999,867 - CCNA_03834 0.55 -0.8
3,999,900 + CCNA_03834 0.57 +0.0
3,999,970 + CCNA_03834 0.61 +0.0
3,999,992 + CCNA_03834 0.62 +0.2
3,999,995 - CCNA_03834 0.63 -0.7
4,000,025 - CCNA_03834 0.64 +0.4
4,000,034 + CCNA_03834 0.65 +0.1
4,000,035 - CCNA_03834 0.65 +0.5
4,000,042 + CCNA_03834 0.65 +0.0
4,000,044 - CCNA_03834 0.65 +0.0
4,000,070 + CCNA_03834 0.67 +0.4
4,000,073 - CCNA_03834 0.67 +0.1
4,000,076 + CCNA_03834 0.67 +0.1
4,000,076 + CCNA_03834 0.67 -1.5
4,000,076 + CCNA_03834 0.67 -0.9
4,000,076 + CCNA_03834 0.67 -1.5
4,000,076 + CCNA_03834 0.67 +0.8
4,000,076 + CCNA_03834 0.67 -0.4
4,000,076 + CCNA_03834 0.67 +0.2
4,000,076 + CCNA_03834 0.67 +0.2
4,000,076 + CCNA_03834 0.67 +0.1
4,000,076 + CCNA_03834 0.67 -0.1
4,000,076 + CCNA_03834 0.67 +0.5
4,000,084 - CCNA_03834 0.68 +1.5
4,000,084 - CCNA_03834 0.68 +1.2
4,000,085 + CCNA_03834 0.68 +1.7
4,000,090 + CCNA_03834 0.68 +0.8
4,000,090 + CCNA_03834 0.68 +0.2
4,000,090 + CCNA_03834 0.68 +0.7
4,000,090 + CCNA_03834 0.68 +0.3
4,000,098 - CCNA_03834 0.68 -1.6
4,000,098 - CCNA_03834 0.68 -0.3
4,000,098 - CCNA_03834 0.68 +0.6
4,000,120 + CCNA_03834 0.70 -1.3
4,000,136 - CCNA_03834 0.70 -1.8
4,000,143 + CCNA_03834 0.71 -0.9
4,000,143 + +1.2
4,000,143 + CCNA_03834 0.71 +0.2
4,000,151 - CCNA_03834 0.71 -0.2
4,000,164 + CCNA_03834 0.72 -0.4
4,000,178 - CCNA_03834 0.73 +0.3
4,000,178 - CCNA_03834 0.73 -0.7
4,000,187 + CCNA_03834 0.73 -0.4
4,000,231 + CCNA_03834 0.76 +0.2
4,000,231 + CCNA_03834 0.76 -0.1
4,000,253 + CCNA_03834 0.77 -0.2
4,000,359 - CCNA_03834 0.83 +1.4
4,000,411 + CCNA_03834 0.86 +0.5
4,000,429 + CCNA_03834 0.87 +0.4
4,000,431 - CCNA_03834 0.87 +0.6
4,000,453 - CCNA_03834 0.88 +1.6
4,000,477 + CCNA_03834 0.89 +1.1
4,000,485 - CCNA_03834 0.90 +1.7
4,000,485 - CCNA_03834 0.90 +2.8
4,000,485 - CCNA_03834 0.90 +1.1
4,000,503 - +2.4
4,000,504 + -1.1
4,000,526 - +0.2
4,000,533 - +1.3
4,000,538 - +0.7
4,000,538 - +0.9
4,000,563 + -0.1
4,000,578 - +0.5
4,000,638 + -2.9
4,000,639 + -0.6
4,000,675 + +0.5
4,000,676 + -1.4
4,001,127 - CCNA_03835 0.37 -0.4
4,001,127 - CCNA_03835 0.37 -1.2
4,001,140 - CCNA_03835 0.38 -1.7
4,001,170 - CCNA_03835 0.41 -2.9
4,001,330 - CCNA_03835 0.54 -3.7
4,001,494 - CCNA_03835 0.67 -0.1
4,001,494 - CCNA_03835 0.67 -1.7
4,001,494 - CCNA_03835 0.67 -2.5
4,001,494 - CCNA_03835 0.67 -1.4
4,001,736 - CCNA_03835 0.87 -1.2
4,001,919 - +1.0
4,001,931 + -1.2
4,001,934 + -2.6
4,001,934 - +5.6
4,001,939 - +2.1
4,001,942 - +1.2
4,001,942 - +2.2
4,001,958 + -1.9
4,001,984 - +1.5
4,001,984 - +2.3
4,002,509 + -2.0
4,002,517 - -0.2
4,002,532 - -0.6

Or see this region's nucleotide sequence