Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02124

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02122 and CCNA_02123 are separated by 335 nucleotidesCCNA_02123 and CCNA_02124 are separated by 144 nucleotidesCCNA_02124 and CCNA_02125 are separated by 243 nucleotides CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data), at 2,273,885 to 2,274,592 _02122 CCNA_02123: CCNA_02123 - transposase, at 2,274,928 to 2,275,422 _02123 CCNA_02124: CCNA_02124 - hypothetical protein, at 2,275,567 to 2,276,028 _02124 CCNA_02125: CCNA_02125 - polar development protein podJ, at 2,276,272 to 2,279,196 _02125 Position (kb) 2275 2276 2277Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2274.576 kb on - strandat 2275.412 kb on + strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.684 kb on - strand, within CCNA_02124at 2275.728 kb on - strand, within CCNA_02124at 2275.756 kb on - strand, within CCNA_02124at 2275.780 kb on - strand, within CCNA_02124at 2275.792 kb on + strand, within CCNA_02124at 2275.800 kb on - strand, within CCNA_02124at 2275.828 kb on + strand, within CCNA_02124at 2275.836 kb on - strand, within CCNA_02124at 2275.836 kb on - strand, within CCNA_02124at 2275.846 kb on - strand, within CCNA_02124at 2275.846 kb on - strand, within CCNA_02124at 2275.928 kb on - strand, within CCNA_02124at 2276.220 kb on + strandat 2276.261 kb on - strandat 2276.277 kb on - strandat 2276.309 kb on + strandat 2276.357 kb on - strandat 2276.371 kb on - strandat 2276.406 kb on + strandat 2276.441 kb on + strandat 2276.444 kb on - strandat 2276.449 kb on - strandat 2276.455 kb on - strandat 2276.500 kb on - strandat 2276.518 kb on + strandat 2276.518 kb on + strandat 2276.526 kb on - strandat 2276.526 kb on - strandat 2276.526 kb on - strandat 2276.625 kb on + strand, within CCNA_02125at 2276.683 kb on - strand, within CCNA_02125at 2276.770 kb on + strand, within CCNA_02125at 2276.785 kb on - strand, within CCNA_02125at 2276.793 kb on + strand, within CCNA_02125at 2276.796 kb on - strand, within CCNA_02125at 2276.841 kb on + strand, within CCNA_02125at 2276.841 kb on + strand, within CCNA_02125at 2276.849 kb on - strand, within CCNA_02125at 2276.851 kb on - strand, within CCNA_02125at 2276.851 kb on - strand, within CCNA_02125at 2276.909 kb on + strand, within CCNA_02125at 2276.909 kb on + strand, within CCNA_02125at 2276.909 kb on + strand, within CCNA_02125at 2276.917 kb on - strand, within CCNA_02125at 2276.917 kb on - strand, within CCNA_02125at 2276.997 kb on - strand, within CCNA_02125at 2277.022 kb on - strand, within CCNA_02125

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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2,274,576 - +0.1
2,275,412 + -0.4
2,275,463 - +0.3
2,275,463 - +0.4
2,275,463 - +0.4
2,275,463 - -0.1
2,275,463 - -1.1
2,275,463 - +0.3
2,275,463 - -0.0
2,275,684 - CCNA_02124 0.25 +2.7
2,275,728 - CCNA_02124 0.35 +0.5
2,275,756 - CCNA_02124 0.41 +1.2
2,275,780 - CCNA_02124 0.46 +0.8
2,275,792 + CCNA_02124 0.49 -1.1
2,275,800 - CCNA_02124 0.50 +0.7
2,275,828 + CCNA_02124 0.56 -1.4
2,275,836 - CCNA_02124 0.58 +0.8
2,275,836 - CCNA_02124 0.58 +0.2
2,275,846 - CCNA_02124 0.60 +2.5
2,275,846 - CCNA_02124 0.60 +1.0
2,275,928 - CCNA_02124 0.78 +1.3
2,276,220 + -0.3
2,276,261 - +1.8
2,276,277 - +1.7
2,276,309 + +0.6
2,276,357 - +1.8
2,276,371 - +3.9
2,276,406 + -0.3
2,276,441 + -0.4
2,276,444 - +2.2
2,276,449 - +1.6
2,276,455 - +1.4
2,276,500 - +2.1
2,276,518 + -1.5
2,276,518 + -0.4
2,276,526 - +2.1
2,276,526 - +1.8
2,276,526 - +1.5
2,276,625 + CCNA_02125 0.12 -2.5
2,276,683 - CCNA_02125 0.14 +2.0
2,276,770 + CCNA_02125 0.17 -2.8
2,276,785 - CCNA_02125 0.18 +1.6
2,276,793 + CCNA_02125 0.18 -2.4
2,276,796 - CCNA_02125 0.18 +1.4
2,276,841 + CCNA_02125 0.19 -0.3
2,276,841 + CCNA_02125 0.19 +2.5
2,276,849 - CCNA_02125 0.20 +0.4
2,276,851 - CCNA_02125 0.20 +0.8
2,276,851 - CCNA_02125 0.20 +1.4
2,276,909 + CCNA_02125 0.22 +1.2
2,276,909 + CCNA_02125 0.22 -0.8
2,276,909 + CCNA_02125 0.22 -0.3
2,276,917 - CCNA_02125 0.22 +1.5
2,276,917 - CCNA_02125 0.22 +1.3
2,276,997 - CCNA_02125 0.25 +1.0
2,277,022 - CCNA_02125 0.26 +1.0

Or see this region's nucleotide sequence