Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02122 and CCNA_02123 are separated by 335 nucleotides CCNA_02123 and CCNA_02124 are separated by 144 nucleotides CCNA_02124 and CCNA_02125 are separated by 243 nucleotides
CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data) , at 2,273,885 to 2,274,592
_02122
CCNA_02123: CCNA_02123 - transposase, at 2,274,928 to 2,275,422
_02123
CCNA_02124: CCNA_02124 - hypothetical protein, at 2,275,567 to 2,276,028
_02124
CCNA_02125: CCNA_02125 - polar development protein podJ, at 2,276,272 to 2,279,196
_02125
Position (kb)
2275
2276
2277 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2274.576 kb on - strand at 2275.412 kb on + strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.684 kb on - strand, within CCNA_02124 at 2275.728 kb on - strand, within CCNA_02124 at 2275.756 kb on - strand, within CCNA_02124 at 2275.780 kb on - strand, within CCNA_02124 at 2275.792 kb on + strand, within CCNA_02124 at 2275.800 kb on - strand, within CCNA_02124 at 2275.828 kb on + strand, within CCNA_02124 at 2275.836 kb on - strand, within CCNA_02124 at 2275.836 kb on - strand, within CCNA_02124 at 2275.846 kb on - strand, within CCNA_02124 at 2275.846 kb on - strand, within CCNA_02124 at 2275.928 kb on - strand, within CCNA_02124 at 2276.220 kb on + strand at 2276.261 kb on - strand at 2276.277 kb on - strand at 2276.309 kb on + strand at 2276.357 kb on - strand at 2276.371 kb on - strand at 2276.406 kb on + strand at 2276.441 kb on + strand at 2276.444 kb on - strand at 2276.449 kb on - strand at 2276.455 kb on - strand at 2276.500 kb on - strand at 2276.518 kb on + strand at 2276.518 kb on + strand at 2276.526 kb on - strand at 2276.526 kb on - strand at 2276.526 kb on - strand at 2276.625 kb on + strand, within CCNA_02125 at 2276.683 kb on - strand, within CCNA_02125 at 2276.770 kb on + strand, within CCNA_02125 at 2276.785 kb on - strand, within CCNA_02125 at 2276.793 kb on + strand, within CCNA_02125 at 2276.796 kb on - strand, within CCNA_02125 at 2276.841 kb on + strand, within CCNA_02125 at 2276.841 kb on + strand, within CCNA_02125 at 2276.849 kb on - strand, within CCNA_02125 at 2276.851 kb on - strand, within CCNA_02125 at 2276.851 kb on - strand, within CCNA_02125 at 2276.909 kb on + strand, within CCNA_02125 at 2276.909 kb on + strand, within CCNA_02125 at 2276.909 kb on + strand, within CCNA_02125 at 2276.917 kb on - strand, within CCNA_02125 at 2276.917 kb on - strand, within CCNA_02125 at 2276.997 kb on - strand, within CCNA_02125 at 2277.022 kb on - strand, within CCNA_02125
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,274,576 - +0.1 2,275,412 + -0.4 2,275,463 - +0.3 2,275,463 - +0.4 2,275,463 - +0.4 2,275,463 - -0.1 2,275,463 - -1.1 2,275,463 - +0.3 2,275,463 - -0.0 2,275,684 - CCNA_02124 0.25 +2.7 2,275,728 - CCNA_02124 0.35 +0.5 2,275,756 - CCNA_02124 0.41 +1.2 2,275,780 - CCNA_02124 0.46 +0.8 2,275,792 + CCNA_02124 0.49 -1.1 2,275,800 - CCNA_02124 0.50 +0.7 2,275,828 + CCNA_02124 0.56 -1.4 2,275,836 - CCNA_02124 0.58 +0.8 2,275,836 - CCNA_02124 0.58 +0.2 2,275,846 - CCNA_02124 0.60 +2.5 2,275,846 - CCNA_02124 0.60 +1.0 2,275,928 - CCNA_02124 0.78 +1.3 2,276,220 + -0.3 2,276,261 - +1.8 2,276,277 - +1.7 2,276,309 + +0.6 2,276,357 - +1.8 2,276,371 - +3.9 2,276,406 + -0.3 2,276,441 + -0.4 2,276,444 - +2.2 2,276,449 - +1.6 2,276,455 - +1.4 2,276,500 - +2.1 2,276,518 + -1.5 2,276,518 + -0.4 2,276,526 - +2.1 2,276,526 - +1.8 2,276,526 - +1.5 2,276,625 + CCNA_02125 0.12 -2.5 2,276,683 - CCNA_02125 0.14 +2.0 2,276,770 + CCNA_02125 0.17 -2.8 2,276,785 - CCNA_02125 0.18 +1.6 2,276,793 + CCNA_02125 0.18 -2.4 2,276,796 - CCNA_02125 0.18 +1.4 2,276,841 + CCNA_02125 0.19 -0.3 2,276,841 + CCNA_02125 0.19 +2.5 2,276,849 - CCNA_02125 0.20 +0.4 2,276,851 - CCNA_02125 0.20 +0.8 2,276,851 - CCNA_02125 0.20 +1.4 2,276,909 + CCNA_02125 0.22 +1.2 2,276,909 + CCNA_02125 0.22 -0.8 2,276,909 + CCNA_02125 0.22 -0.3 2,276,917 - CCNA_02125 0.22 +1.5 2,276,917 - CCNA_02125 0.22 +1.3 2,276,997 - CCNA_02125 0.25 +1.0 2,277,022 - CCNA_02125 0.26 +1.0
Or see this region's nucleotide sequence