Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02070 and CCNA_02071 are separated by 157 nucleotides CCNA_02071 and CCNA_02072 are separated by 120 nucleotides
CCNA_02070: CCNA_02070 - protein translocase subunit secD, at 2,220,831 to 2,222,429
_02070
CCNA_02071: CCNA_02071 - protein translocase subunit YajC, at 2,222,587 to 2,222,898
_02071
CCNA_02072: CCNA_02072 - ATP-dependent protease subunit, at 2,223,019 to 2,223,858
_02072
Position (kb)
2222
2223 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2222.650 kb on - strand, within CCNA_02071 at 2223.011 kb on - strand at 2223.024 kb on - strand at 2223.061 kb on + strand at 2223.062 kb on + strand at 2223.103 kb on - strand, within CCNA_02072 at 2223.180 kb on + strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.270 kb on + strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.278 kb on - strand, within CCNA_02072 at 2223.292 kb on + strand, within CCNA_02072 at 2223.299 kb on - strand, within CCNA_02072 at 2223.306 kb on + strand, within CCNA_02072 at 2223.338 kb on - strand, within CCNA_02072 at 2223.341 kb on + strand, within CCNA_02072 at 2223.344 kb on - strand, within CCNA_02072 at 2223.463 kb on - strand, within CCNA_02072 at 2223.485 kb on - strand, within CCNA_02072 at 2223.520 kb on - strand, within CCNA_02072 at 2223.545 kb on - strand, within CCNA_02072 at 2223.625 kb on + strand, within CCNA_02072 at 2223.647 kb on + strand, within CCNA_02072 at 2223.673 kb on - strand, within CCNA_02072 at 2223.727 kb on + strand, within CCNA_02072 at 2223.757 kb on + strand, within CCNA_02072 at 2223.765 kb on - strand, within CCNA_02072 at 2223.766 kb on - strand, within CCNA_02072 at 2223.802 kb on + strand at 2223.802 kb on + strand at 2223.839 kb on + strand at 2223.842 kb on - strand at 2223.858 kb on + strand at 2223.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,222,650 - CCNA_02071 0.20 -2.8 2,223,011 - -0.3 2,223,024 - +1.7 2,223,061 + +0.6 2,223,062 + -0.6 2,223,103 - CCNA_02072 0.10 +0.0 2,223,180 + CCNA_02072 0.19 +1.9 2,223,270 + CCNA_02072 0.30 +0.6 2,223,270 + CCNA_02072 0.30 +0.4 2,223,278 - CCNA_02072 0.31 +2.1 2,223,278 - CCNA_02072 0.31 -0.1 2,223,278 - CCNA_02072 0.31 -2.2 2,223,278 - CCNA_02072 0.31 -0.5 2,223,278 - CCNA_02072 0.31 -1.7 2,223,292 + CCNA_02072 0.33 -0.2 2,223,299 - CCNA_02072 0.33 +0.8 2,223,306 + CCNA_02072 0.34 -0.2 2,223,338 - CCNA_02072 0.38 +1.8 2,223,341 + CCNA_02072 0.38 +0.3 2,223,344 - CCNA_02072 0.39 -0.2 2,223,463 - CCNA_02072 0.53 +0.9 2,223,485 - CCNA_02072 0.55 +1.3 2,223,520 - CCNA_02072 0.60 -2.0 2,223,545 - CCNA_02072 0.63 +0.6 2,223,625 + CCNA_02072 0.72 +3.9 2,223,647 + CCNA_02072 0.75 +1.0 2,223,673 - CCNA_02072 0.78 -0.8 2,223,727 + CCNA_02072 0.84 +1.4 2,223,757 + CCNA_02072 0.88 +1.0 2,223,765 - CCNA_02072 0.89 +0.8 2,223,766 - CCNA_02072 0.89 -0.6 2,223,802 + -1.5 2,223,802 + -0.4 2,223,839 + +0.6 2,223,842 - +1.3 2,223,858 + -1.4 2,223,867 - -0.4
Or see this region's nucleotide sequence