Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_515

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_514 and Ac3H11_515 are separated by 378 nucleotidesAc3H11_515 and Ac3H11_516 are separated by 72 nucleotides Ac3H11_514 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 214,170 to 215,948 _514 Ac3H11_515 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 216,327 to 218,090 _515 Ac3H11_516 - COGs COG3146, at 218,163 to 219,503 _516 Position (kb) 216 217 218 219Strain fitness (log2 ratio) -1 0 1 2at 215.466 kb on - strand, within Ac3H11_514at 215.946 kb on + strandat 215.947 kb on - strandat 216.080 kb on - strandat 216.080 kb on - strandat 216.104 kb on + strandat 216.105 kb on - strandat 216.130 kb on + strandat 216.131 kb on - strandat 216.131 kb on - strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.299 kb on + strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.300 kb on - strandat 216.303 kb on + strandat 216.303 kb on + strandat 216.303 kb on + strandat 216.303 kb on + strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.304 kb on - strandat 216.305 kb on + strandat 216.305 kb on + strandat 216.305 kb on + strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.306 kb on - strandat 216.559 kb on - strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.693 kb on + strand, within Ac3H11_515at 216.694 kb on - strand, within Ac3H11_515at 216.694 kb on - strand, within Ac3H11_515at 216.789 kb on + strand, within Ac3H11_515at 216.790 kb on - strand, within Ac3H11_515at 216.790 kb on - strand, within Ac3H11_515at 216.790 kb on - strand, within Ac3H11_515at 217.376 kb on + strand, within Ac3H11_515at 217.376 kb on + strand, within Ac3H11_515at 217.376 kb on + strand, within Ac3H11_515at 217.376 kb on + strand, within Ac3H11_515at 217.377 kb on - strand, within Ac3H11_515at 217.377 kb on - strand, within Ac3H11_515at 217.985 kb on + strandat 218.096 kb on + strandat 218.096 kb on + strandat 218.097 kb on - strandat 218.097 kb on - strandat 218.209 kb on + strandat 218.210 kb on - strandat 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.395 kb on + strand, within Ac3H11_516at 218.395 kb on + strand, within Ac3H11_516at 218.395 kb on + strand, within Ac3H11_516at 218.396 kb on - strand, within Ac3H11_516at 218.396 kb on - strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.641 kb on + strand, within Ac3H11_516at 218.653 kb on + strand, within Ac3H11_516

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
215,466 - Ac3H11_514 0.73 -0.6
215,946 + +0.6
215,947 - +0.3
216,080 - -0.6
216,080 - -0.7
216,104 + +0.1
216,105 - +0.8
216,130 + +1.4
216,131 - -0.1
216,131 - +0.2
216,299 + +0.5
216,299 + +1.8
216,299 + +0.1
216,299 + +0.1
216,299 + +0.0
216,299 + -0.4
216,299 + +0.5
216,299 + +0.2
216,300 - -0.6
216,300 - -0.6
216,300 - -0.4
216,300 - +0.1
216,300 - -0.3
216,300 - -0.1
216,303 + +0.4
216,303 + +0.1
216,303 + +0.8
216,303 + +0.3
216,304 - +0.0
216,304 - +0.8
216,304 - +0.3
216,304 - +0.4
216,304 - -0.0
216,304 - +0.7
216,304 - -0.0
216,305 + -0.7
216,305 + +0.7
216,305 + +0.1
216,306 - +0.8
216,306 - -0.2
216,306 - +0.5
216,306 - +1.8
216,306 - +0.3
216,559 - Ac3H11_515 0.13 +0.1
216,693 + Ac3H11_515 0.21 -0.0
216,693 + Ac3H11_515 0.21 +0.4
216,693 + Ac3H11_515 0.21 +0.0
216,693 + Ac3H11_515 0.21 -0.2
216,693 + Ac3H11_515 0.21 +0.6
216,693 + Ac3H11_515 0.21 -0.1
216,693 + Ac3H11_515 0.21 -0.1
216,694 - Ac3H11_515 0.21 -0.2
216,694 - Ac3H11_515 0.21 -0.6
216,789 + Ac3H11_515 0.26 +0.3
216,790 - Ac3H11_515 0.26 -0.0
216,790 - Ac3H11_515 0.26 +0.2
216,790 - Ac3H11_515 0.26 +0.5
217,376 + Ac3H11_515 0.59 -0.2
217,376 + Ac3H11_515 0.59 +0.5
217,376 + Ac3H11_515 0.59 +1.3
217,376 + Ac3H11_515 0.59 -0.2
217,377 - Ac3H11_515 0.60 +0.2
217,377 - Ac3H11_515 0.60 +1.4
217,985 + -1.4
218,096 + +0.5
218,096 + +0.6
218,097 - -0.4
218,097 - -1.2
218,209 + +0.0
218,210 - +0.2
218,373 + Ac3H11_516 0.16 +0.1
218,373 + Ac3H11_516 0.16 +0.1
218,373 + Ac3H11_516 0.16 +0.3
218,373 + Ac3H11_516 0.16 -0.1
218,373 + Ac3H11_516 0.16 -0.3
218,373 + Ac3H11_516 0.16 +0.7
218,374 - Ac3H11_516 0.16 +0.2
218,374 - Ac3H11_516 0.16 +0.5
218,374 - Ac3H11_516 0.16 +0.8
218,374 - Ac3H11_516 0.16 +0.6
218,374 - Ac3H11_516 0.16 +1.4
218,395 + Ac3H11_516 0.17 +0.8
218,395 + Ac3H11_516 0.17 +1.0
218,395 + Ac3H11_516 0.17 -0.2
218,396 - Ac3H11_516 0.17 +0.2
218,396 - Ac3H11_516 0.17 -0.8
218,398 + Ac3H11_516 0.18 -0.5
218,398 + Ac3H11_516 0.18 -1.1
218,398 + Ac3H11_516 0.18 +0.7
218,398 + Ac3H11_516 0.18 -0.0
218,398 + Ac3H11_516 0.18 -0.5
218,398 + Ac3H11_516 0.18 +1.0
218,399 - Ac3H11_516 0.18 +1.2
218,399 - Ac3H11_516 0.18 -0.9
218,399 - Ac3H11_516 0.18 +0.6
218,399 - Ac3H11_516 0.18 -0.0
218,399 - Ac3H11_516 0.18 +0.7
218,399 - Ac3H11_516 0.18 +0.8
218,641 + Ac3H11_516 0.36 -0.2
218,653 + Ac3H11_516 0.37 -0.3

Or see this region's nucleotide sequence