Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16810

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16805 and AO353_16810 are separated by 8 nucleotidesAO353_16810 and AO353_16815 are separated by 42 nucleotides AO353_16805: AO353_16805 - recombinase RecA, at 3,721,577 to 3,722,629 _16805 AO353_16810: AO353_16810 - recombinase RecX, at 3,722,638 to 3,723,105 _16810 AO353_16815: AO353_16815 - cytochrome D ubiquinol oxidase subunit II, at 3,723,148 to 3,724,269 _16815 Position (kb) 3722 3723 3724Strain fitness (log2 ratio) -2 -1 0 1 2at 3721.658 kb on - strandat 3721.658 kb on - strandat 3721.767 kb on - strand, within AO353_16805at 3721.880 kb on + strand, within AO353_16805at 3721.880 kb on + strand, within AO353_16805at 3721.880 kb on + strand, within AO353_16805at 3721.880 kb on + strand, within AO353_16805at 3721.881 kb on - strand, within AO353_16805at 3721.881 kb on - strand, within AO353_16805at 3721.881 kb on - strand, within AO353_16805at 3721.881 kb on - strand, within AO353_16805at 3722.102 kb on - strand, within AO353_16805at 3722.225 kb on + strand, within AO353_16805at 3722.226 kb on - strand, within AO353_16805at 3722.226 kb on - strand, within AO353_16805at 3722.379 kb on - strand, within AO353_16805at 3722.379 kb on - strand, within AO353_16805at 3722.444 kb on + strand, within AO353_16805at 3722.444 kb on + strand, within AO353_16805at 3722.444 kb on + strand, within AO353_16805at 3722.444 kb on + strand, within AO353_16805at 3722.444 kb on + strand, within AO353_16805at 3722.445 kb on - strand, within AO353_16805at 3722.445 kb on - strand, within AO353_16805at 3722.445 kb on - strand, within AO353_16805at 3722.445 kb on - strand, within AO353_16805at 3722.450 kb on + strand, within AO353_16805at 3722.450 kb on + strand, within AO353_16805at 3722.450 kb on + strand, within AO353_16805at 3722.450 kb on + strand, within AO353_16805at 3722.451 kb on - strandat 3722.451 kb on - strand, within AO353_16805at 3722.623 kb on + strandat 3722.623 kb on + strandat 3722.623 kb on + strandat 3722.624 kb on - strandat 3722.648 kb on + strandat 3722.730 kb on + strand, within AO353_16810at 3722.730 kb on + strand, within AO353_16810at 3722.730 kb on + strand, within AO353_16810at 3722.769 kb on + strand, within AO353_16810at 3722.996 kb on + strand, within AO353_16810at 3722.996 kb on + strand, within AO353_16810at 3722.996 kb on + strand, within AO353_16810at 3723.052 kb on + strand, within AO353_16810at 3723.122 kb on - strandat 3723.130 kb on - strandat 3723.130 kb on - strandat 3723.130 kb on - strandat 3723.130 kb on - strandat 3723.130 kb on - strandat 3723.153 kb on + strandat 3723.153 kb on + strandat 3723.153 kb on + strandat 3723.153 kb on + strandat 3723.154 kb on - strandat 3723.154 kb on - strandat 3723.154 kb on - strandat 3723.230 kb on + strandat 3723.230 kb on + strandat 3723.230 kb on + strandat 3723.230 kb on + strandat 3723.230 kb on + strandat 3723.231 kb on - strandat 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.332 kb on + strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.333 kb on - strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.336 kb on + strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.337 kb on - strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.385 kb on + strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.386 kb on - strand, within AO353_16815at 3723.387 kb on + strand, within AO353_16815at 3723.387 kb on + strand, within AO353_16815at 3723.387 kb on + strand, within AO353_16815at 3723.387 kb on + strand, within AO353_16815at 3723.388 kb on - strand, within AO353_16815at 3723.388 kb on - strand, within AO353_16815at 3723.388 kb on - strand, within AO353_16815at 3723.388 kb on - strand, within AO353_16815at 3723.388 kb on - strand, within AO353_16815at 3723.388 kb on - strand, within AO353_16815at 3723.473 kb on + strand, within AO353_16815at 3723.473 kb on + strand, within AO353_16815at 3723.473 kb on + strand, within AO353_16815at 3723.474 kb on - strand, within AO353_16815at 3723.474 kb on - strand, within AO353_16815at 3723.474 kb on - strand, within AO353_16815at 3723.474 kb on - strand, within AO353_16815at 3723.474 kb on - strand, within AO353_16815at 3723.474 kb on - strand, within AO353_16815at 3723.512 kb on + strand, within AO353_16815at 3723.512 kb on + strand, within AO353_16815at 3723.512 kb on + strand, within AO353_16815at 3723.513 kb on - strand, within AO353_16815at 3723.513 kb on - strand, within AO353_16815at 3723.513 kb on - strand, within AO353_16815at 3723.513 kb on - strand, within AO353_16815at 3723.551 kb on + strand, within AO353_16815at 3723.551 kb on + strand, within AO353_16815at 3723.551 kb on + strand, within AO353_16815at 3723.551 kb on + strand, within AO353_16815at 3723.551 kb on + strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.552 kb on - strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.673 kb on + strand, within AO353_16815at 3723.674 kb on - strand, within AO353_16815at 3723.837 kb on + strand, within AO353_16815at 3723.837 kb on + strand, within AO353_16815at 3723.838 kb on - strand, within AO353_16815at 3723.987 kb on + strand, within AO353_16815at 3723.987 kb on + strand, within AO353_16815at 3723.987 kb on + strand, within AO353_16815at 3723.987 kb on + strand, within AO353_16815

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,721,658 - -0.4
3,721,658 - -1.9
3,721,767 - AO353_16805 0.18 +0.2
3,721,880 + AO353_16805 0.29 -1.5
3,721,880 + AO353_16805 0.29 +0.2
3,721,880 + AO353_16805 0.29 +1.0
3,721,880 + AO353_16805 0.29 -0.8
3,721,881 - AO353_16805 0.29 +0.5
3,721,881 - AO353_16805 0.29 -1.2
3,721,881 - AO353_16805 0.29 -1.8
3,721,881 - AO353_16805 0.29 -0.8
3,722,102 - AO353_16805 0.50 +0.0
3,722,225 + AO353_16805 0.62 -1.6
3,722,226 - AO353_16805 0.62 -1.1
3,722,226 - AO353_16805 0.62 -0.8
3,722,379 - AO353_16805 0.76 -1.8
3,722,379 - AO353_16805 0.76 +0.9
3,722,444 + AO353_16805 0.82 +0.1
3,722,444 + AO353_16805 0.82 -1.5
3,722,444 + AO353_16805 0.82 -1.3
3,722,444 + AO353_16805 0.82 -0.6
3,722,444 + AO353_16805 0.82 +0.2
3,722,445 - AO353_16805 0.82 -1.6
3,722,445 - AO353_16805 0.82 -1.1
3,722,445 - AO353_16805 0.82 -2.2
3,722,445 - AO353_16805 0.82 -0.1
3,722,450 + AO353_16805 0.83 -2.6
3,722,450 + AO353_16805 0.83 -1.5
3,722,450 + AO353_16805 0.83 -0.6
3,722,450 + AO353_16805 0.83 -2.1
3,722,451 - +1.4
3,722,451 - AO353_16805 0.83 -1.9
3,722,623 + +1.4
3,722,623 + -0.5
3,722,623 + -0.3
3,722,624 - -2.6
3,722,648 + +1.0
3,722,730 + AO353_16810 0.20 -0.5
3,722,730 + AO353_16810 0.20 -0.6
3,722,730 + AO353_16810 0.20 -0.6
3,722,769 + AO353_16810 0.28 -0.7
3,722,996 + AO353_16810 0.76 -1.1
3,722,996 + AO353_16810 0.76 +1.4
3,722,996 + AO353_16810 0.76 -0.6
3,723,052 + AO353_16810 0.88 -1.1
3,723,122 - +0.7
3,723,130 - -0.5
3,723,130 - +1.1
3,723,130 - -0.6
3,723,130 - +0.9
3,723,130 - +0.7
3,723,153 + +0.9
3,723,153 + +0.9
3,723,153 + -1.0
3,723,153 + -0.3
3,723,154 - +0.1
3,723,154 - -0.5
3,723,154 - -0.6
3,723,230 + -1.6
3,723,230 + +1.8
3,723,230 + -1.1
3,723,230 + -0.2
3,723,230 + -0.3
3,723,231 - -0.4
3,723,332 + AO353_16815 0.16 +0.7
3,723,332 + AO353_16815 0.16 -0.5
3,723,332 + AO353_16815 0.16 +0.1
3,723,332 + AO353_16815 0.16 +1.2
3,723,332 + AO353_16815 0.16 -0.1
3,723,332 + AO353_16815 0.16 -0.6
3,723,332 + AO353_16815 0.16 +0.4
3,723,332 + AO353_16815 0.16 -0.8
3,723,332 + AO353_16815 0.16 +0.2
3,723,332 + AO353_16815 0.16 -0.6
3,723,333 - AO353_16815 0.16 -0.3
3,723,333 - AO353_16815 0.16 +1.4
3,723,333 - AO353_16815 0.16 -0.2
3,723,333 - AO353_16815 0.16 -0.3
3,723,333 - AO353_16815 0.16 +0.5
3,723,333 - AO353_16815 0.16 +1.0
3,723,333 - AO353_16815 0.16 +0.8
3,723,333 - AO353_16815 0.16 +0.1
3,723,333 - AO353_16815 0.16 -1.1
3,723,333 - AO353_16815 0.16 +0.3
3,723,333 - AO353_16815 0.16 +0.5
3,723,333 - AO353_16815 0.16 +0.2
3,723,333 - AO353_16815 0.16 +0.1
3,723,333 - AO353_16815 0.16 +1.1
3,723,333 - AO353_16815 0.16 -0.5
3,723,336 + AO353_16815 0.17 -1.1
3,723,336 + AO353_16815 0.17 -0.5
3,723,336 + AO353_16815 0.17 -1.2
3,723,336 + AO353_16815 0.17 -0.4
3,723,336 + AO353_16815 0.17 +1.4
3,723,336 + AO353_16815 0.17 -0.0
3,723,336 + AO353_16815 0.17 -1.0
3,723,336 + AO353_16815 0.17 -0.7
3,723,336 + AO353_16815 0.17 -0.7
3,723,336 + AO353_16815 0.17 -0.5
3,723,336 + AO353_16815 0.17 -0.8
3,723,337 - AO353_16815 0.17 +0.9
3,723,337 - AO353_16815 0.17 +0.4
3,723,337 - AO353_16815 0.17 -0.2
3,723,337 - AO353_16815 0.17 -1.2
3,723,337 - AO353_16815 0.17 +0.5
3,723,337 - AO353_16815 0.17 +0.8
3,723,337 - AO353_16815 0.17 -0.6
3,723,337 - AO353_16815 0.17 -0.8
3,723,337 - AO353_16815 0.17 -0.6
3,723,337 - AO353_16815 0.17 +0.2
3,723,337 - AO353_16815 0.17 +0.6
3,723,337 - AO353_16815 0.17 -0.6
3,723,337 - AO353_16815 0.17 -0.3
3,723,337 - AO353_16815 0.17 -1.7
3,723,337 - AO353_16815 0.17 -0.4
3,723,337 - AO353_16815 0.17 -0.5
3,723,337 - AO353_16815 0.17 -1.1
3,723,337 - AO353_16815 0.17 -1.2
3,723,337 - AO353_16815 0.17 +0.4
3,723,337 - AO353_16815 0.17 -0.3
3,723,337 - AO353_16815 0.17 -0.3
3,723,337 - AO353_16815 0.17 +1.2
3,723,337 - AO353_16815 0.17 +1.6
3,723,385 + AO353_16815 0.21 -0.2
3,723,385 + AO353_16815 0.21 +1.2
3,723,385 + AO353_16815 0.21 -0.6
3,723,385 + AO353_16815 0.21 +0.3
3,723,385 + AO353_16815 0.21 +0.6
3,723,385 + AO353_16815 0.21 -1.0
3,723,385 + AO353_16815 0.21 -0.7
3,723,385 + AO353_16815 0.21 -0.2
3,723,385 + AO353_16815 0.21 -0.3
3,723,385 + AO353_16815 0.21 -0.5
3,723,385 + AO353_16815 0.21 +0.0
3,723,385 + AO353_16815 0.21 -0.4
3,723,385 + AO353_16815 0.21 +0.2
3,723,385 + AO353_16815 0.21 +0.3
3,723,386 - AO353_16815 0.21 -0.2
3,723,386 - AO353_16815 0.21 +1.0
3,723,386 - AO353_16815 0.21 -0.6
3,723,386 - AO353_16815 0.21 +0.7
3,723,386 - AO353_16815 0.21 +0.2
3,723,386 - AO353_16815 0.21 +0.0
3,723,386 - AO353_16815 0.21 +0.6
3,723,386 - AO353_16815 0.21 -0.6
3,723,386 - AO353_16815 0.21 -1.5
3,723,386 - AO353_16815 0.21 -1.0
3,723,386 - AO353_16815 0.21 -1.1
3,723,386 - AO353_16815 0.21 +0.5
3,723,386 - AO353_16815 0.21 +0.4
3,723,386 - AO353_16815 0.21 +0.0
3,723,386 - AO353_16815 0.21 +1.1
3,723,386 - AO353_16815 0.21 -0.7
3,723,386 - AO353_16815 0.21 +0.0
3,723,386 - AO353_16815 0.21 -0.8
3,723,386 - AO353_16815 0.21 +1.0
3,723,387 + AO353_16815 0.21 -1.1
3,723,387 + AO353_16815 0.21 +1.5
3,723,387 + AO353_16815 0.21 +0.0
3,723,387 + AO353_16815 0.21 +1.3
3,723,388 - AO353_16815 0.21 +0.8
3,723,388 - AO353_16815 0.21 -1.2
3,723,388 - AO353_16815 0.21 -0.2
3,723,388 - AO353_16815 0.21 +0.5
3,723,388 - AO353_16815 0.21 +0.4
3,723,388 - AO353_16815 0.21 +0.3
3,723,473 + AO353_16815 0.29 +0.5
3,723,473 + AO353_16815 0.29 +0.5
3,723,473 + AO353_16815 0.29 -1.1
3,723,474 - AO353_16815 0.29 -1.6
3,723,474 - AO353_16815 0.29 +1.8
3,723,474 - AO353_16815 0.29 +0.8
3,723,474 - AO353_16815 0.29 +0.3
3,723,474 - AO353_16815 0.29 +1.1
3,723,474 - AO353_16815 0.29 +0.4
3,723,512 + AO353_16815 0.32 +0.4
3,723,512 + AO353_16815 0.32 -0.5
3,723,512 + AO353_16815 0.32 -1.3
3,723,513 - AO353_16815 0.33 -2.0
3,723,513 - AO353_16815 0.33 -0.3
3,723,513 - AO353_16815 0.33 +1.0
3,723,513 - AO353_16815 0.33 +0.0
3,723,551 + AO353_16815 0.36 -1.3
3,723,551 + AO353_16815 0.36 -1.1
3,723,551 + AO353_16815 0.36 +0.8
3,723,551 + AO353_16815 0.36 +0.7
3,723,551 + AO353_16815 0.36 +0.8
3,723,552 - AO353_16815 0.36 +0.4
3,723,552 - AO353_16815 0.36 -0.4
3,723,552 - AO353_16815 0.36 -0.1
3,723,552 - AO353_16815 0.36 -0.2
3,723,552 - AO353_16815 0.36 -0.8
3,723,552 - AO353_16815 0.36 -0.4
3,723,552 - AO353_16815 0.36 +0.4
3,723,552 - AO353_16815 0.36 +0.0
3,723,552 - AO353_16815 0.36 -0.4
3,723,552 - AO353_16815 0.36 +1.8
3,723,552 - AO353_16815 0.36 +0.1
3,723,552 - AO353_16815 0.36 -0.7
3,723,552 - AO353_16815 0.36 +0.3
3,723,552 - AO353_16815 0.36 +0.3
3,723,552 - AO353_16815 0.36 +0.7
3,723,552 - AO353_16815 0.36 -0.6
3,723,552 - AO353_16815 0.36 -2.0
3,723,673 + AO353_16815 0.47 -0.3
3,723,673 + AO353_16815 0.47 +0.0
3,723,673 + AO353_16815 0.47 -1.1
3,723,673 + AO353_16815 0.47 -0.4
3,723,673 + AO353_16815 0.47 -1.5
3,723,673 + AO353_16815 0.47 +0.4
3,723,673 + AO353_16815 0.47 +1.2
3,723,673 + AO353_16815 0.47 -0.7
3,723,673 + AO353_16815 0.47 +0.2
3,723,673 + AO353_16815 0.47 -0.2
3,723,673 + AO353_16815 0.47 -0.9
3,723,673 + AO353_16815 0.47 +0.0
3,723,674 - AO353_16815 0.47 -0.3
3,723,837 + AO353_16815 0.61 -0.5
3,723,837 + AO353_16815 0.61 +0.1
3,723,838 - AO353_16815 0.61 +0.2
3,723,987 + AO353_16815 0.75 +0.9
3,723,987 + AO353_16815 0.75 -0.3
3,723,987 + AO353_16815 0.75 +0.6
3,723,987 + AO353_16815 0.75 -0.3

Or see this region's nucleotide sequence