Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01260 and AO353_01265 are separated by 60 nucleotides AO353_01265 and AO353_01270 are separated by 9 nucleotides AO353_01270 and AO353_01275 are separated by 297 nucleotides AO353_01275 and AO353_01280 are separated by 209 nucleotides
AO353_01260: AO353_01260 - transcriptional regulator, at 276,305 to 277,099
_01260
AO353_01265: AO353_01265 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 277,160 to 277,789
_01265
AO353_01270: AO353_01270 - 2-dehydro-3-deoxygalactonokinase, at 277,799 to 278,794
_01270
AO353_01275: AO353_01275 - hypothetical protein, at 279,092 to 279,391
_01275
AO353_01280: AO353_01280 - hypothetical protein, at 279,601 to 280,095
_01280
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 276.816 kb on + strand, within AO353_01260 at 276.816 kb on + strand, within AO353_01260 at 276.817 kb on - strand, within AO353_01260 at 276.895 kb on - strand, within AO353_01260 at 276.978 kb on - strand, within AO353_01260 at 277.099 kb on + strand at 277.099 kb on + strand at 277.099 kb on + strand at 277.099 kb on + strand at 277.100 kb on - strand at 277.100 kb on - strand at 277.100 kb on - strand at 277.100 kb on - strand at 277.100 kb on - strand at 277.139 kb on - strand at 277.161 kb on + strand at 277.161 kb on + strand at 277.161 kb on + strand at 277.161 kb on + strand at 277.162 kb on - strand at 277.162 kb on - strand at 277.162 kb on - strand at 277.162 kb on - strand at 277.162 kb on - strand at 277.162 kb on - strand at 277.197 kb on + strand at 277.197 kb on + strand at 277.197 kb on + strand at 277.198 kb on - strand at 277.198 kb on - strand at 277.198 kb on - strand at 277.198 kb on - strand at 277.198 kb on - strand at 277.198 kb on - strand at 277.198 kb on - strand at 277.352 kb on + strand, within AO353_01265 at 277.352 kb on + strand, within AO353_01265 at 277.353 kb on - strand, within AO353_01265 at 277.353 kb on - strand, within AO353_01265 at 277.476 kb on + strand, within AO353_01265 at 277.477 kb on - strand, within AO353_01265 at 277.477 kb on - strand, within AO353_01265 at 277.477 kb on - strand, within AO353_01265 at 277.477 kb on - strand, within AO353_01265 at 277.477 kb on - strand, within AO353_01265 at 277.477 kb on - strand, within AO353_01265 at 277.477 kb on - strand, within AO353_01265 at 277.648 kb on - strand, within AO353_01265 at 277.698 kb on + strand, within AO353_01265 at 277.698 kb on + strand, within AO353_01265 at 277.699 kb on - strand, within AO353_01265 at 277.699 kb on - strand, within AO353_01265 at 277.800 kb on + strand at 277.801 kb on - strand at 277.913 kb on - strand, within AO353_01270 at 278.047 kb on - strand, within AO353_01270 at 278.047 kb on - strand, within AO353_01270 at 278.047 kb on - strand, within AO353_01270 at 278.440 kb on + strand, within AO353_01270 at 278.440 kb on + strand, within AO353_01270 at 278.520 kb on + strand, within AO353_01270 at 278.521 kb on - strand, within AO353_01270 at 278.742 kb on + strand at 278.742 kb on + strand at 278.835 kb on + strand at 278.835 kb on + strand at 278.835 kb on + strand at 278.835 kb on + strand at 278.836 kb on - strand at 278.836 kb on - strand at 278.836 kb on - strand at 278.836 kb on - strand at 278.837 kb on + strand at 278.838 kb on - strand at 279.040 kb on - strand at 279.093 kb on + strand at 279.103 kb on + strand at 279.117 kb on - strand at 279.139 kb on + strand at 279.140 kb on - strand, within AO353_01275 at 279.154 kb on - strand, within AO353_01275 at 279.154 kb on - strand, within AO353_01275 at 279.196 kb on + strand, within AO353_01275 at 279.198 kb on + strand, within AO353_01275 at 279.229 kb on + strand, within AO353_01275 at 279.243 kb on + strand, within AO353_01275 at 279.243 kb on + strand, within AO353_01275 at 279.243 kb on + strand, within AO353_01275 at 279.244 kb on - strand, within AO353_01275 at 279.352 kb on + strand, within AO353_01275 at 279.353 kb on - strand, within AO353_01275 at 279.482 kb on - strand at 279.501 kb on - strand at 279.501 kb on - strand at 279.501 kb on - strand at 279.501 kb on - strand at 279.505 kb on - strand at 279.505 kb on - strand at 279.633 kb on + strand at 279.634 kb on - strand at 279.634 kb on - strand at 279.637 kb on + strand at 279.637 kb on + strand at 279.637 kb on + strand at 279.638 kb on - strand at 279.638 kb on - strand at 279.638 kb on - strand at 279.638 kb on - strand at 279.660 kb on - strand, within AO353_01280 at 279.667 kb on - strand, within AO353_01280 at 279.667 kb on - strand, within AO353_01280 at 279.668 kb on + strand, within AO353_01280 at 279.669 kb on - strand, within AO353_01280 at 279.669 kb on - strand, within AO353_01280 at 279.669 kb on - strand, within AO353_01280 at 279.672 kb on + strand, within AO353_01280 at 279.672 kb on + strand, within AO353_01280 at 279.673 kb on - strand, within AO353_01280 at 279.673 kb on - strand, within AO353_01280 at 279.678 kb on + strand, within AO353_01280
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 276,816 + AO353_01260 0.64 -0.6 276,816 + AO353_01260 0.64 -0.4 276,817 - AO353_01260 0.64 +0.5 276,895 - AO353_01260 0.74 -0.5 276,978 - AO353_01260 0.85 -0.9 277,099 + +0.4 277,099 + -0.4 277,099 + -0.4 277,099 + -0.2 277,100 - -0.6 277,100 - +0.9 277,100 - -0.6 277,100 - -0.2 277,100 - -0.8 277,139 - +0.4 277,161 + -0.5 277,161 + +0.2 277,161 + +0.4 277,161 + +0.5 277,162 - -0.3 277,162 - -0.4 277,162 - +0.3 277,162 - +0.1 277,162 - -0.6 277,162 - -0.2 277,197 + -0.8 277,197 + +0.8 277,197 + -1.6 277,198 - -0.0 277,198 - -0.3 277,198 - +1.0 277,198 - -0.0 277,198 - +0.1 277,198 - +0.8 277,198 - +0.1 277,352 + AO353_01265 0.30 -0.1 277,352 + AO353_01265 0.30 +1.2 277,353 - AO353_01265 0.31 -0.3 277,353 - AO353_01265 0.31 -0.2 277,476 + AO353_01265 0.50 +0.5 277,477 - AO353_01265 0.50 -0.5 277,477 - AO353_01265 0.50 -0.5 277,477 - AO353_01265 0.50 +0.8 277,477 - AO353_01265 0.50 +0.4 277,477 - AO353_01265 0.50 -0.7 277,477 - AO353_01265 0.50 +0.0 277,477 - AO353_01265 0.50 -0.3 277,648 - AO353_01265 0.77 -1.4 277,698 + AO353_01265 0.85 -0.2 277,698 + AO353_01265 0.85 +1.6 277,699 - AO353_01265 0.86 +0.5 277,699 - AO353_01265 0.86 -1.6 277,800 + +0.7 277,801 - -0.8 277,913 - AO353_01270 0.11 -0.1 278,047 - AO353_01270 0.25 -1.0 278,047 - AO353_01270 0.25 +0.5 278,047 - AO353_01270 0.25 -1.0 278,440 + AO353_01270 0.64 -1.9 278,440 + AO353_01270 0.64 -1.0 278,520 + AO353_01270 0.72 -1.2 278,521 - AO353_01270 0.72 -0.2 278,742 + -0.2 278,742 + -0.6 278,835 + +0.2 278,835 + +1.6 278,835 + +0.2 278,835 + -0.5 278,836 - +0.4 278,836 - -0.2 278,836 - -0.8 278,836 - +0.6 278,837 + -0.3 278,838 - -0.4 279,040 - -0.3 279,093 + -1.0 279,103 + +1.5 279,117 - +0.6 279,139 + -0.6 279,140 - AO353_01275 0.16 -0.0 279,154 - AO353_01275 0.21 +0.1 279,154 - AO353_01275 0.21 +0.5 279,196 + AO353_01275 0.35 -1.5 279,198 + AO353_01275 0.35 +0.8 279,229 + AO353_01275 0.46 -0.8 279,243 + AO353_01275 0.50 +0.2 279,243 + AO353_01275 0.50 -0.7 279,243 + AO353_01275 0.50 +0.4 279,244 - AO353_01275 0.51 -0.5 279,352 + AO353_01275 0.87 -0.2 279,353 - AO353_01275 0.87 +0.8 279,482 - -1.2 279,501 - -0.5 279,501 - +0.2 279,501 - -0.3 279,501 - +0.5 279,505 - -0.6 279,505 - +0.9 279,633 + -0.6 279,634 - -0.3 279,634 - +0.8 279,637 + -0.9 279,637 + -0.9 279,637 + -0.3 279,638 - +0.4 279,638 - +2.2 279,638 - +0.1 279,638 - -0.6 279,660 - AO353_01280 0.12 +0.2 279,667 - AO353_01280 0.13 +0.6 279,667 - AO353_01280 0.13 +0.3 279,668 + AO353_01280 0.14 +0.5 279,669 - AO353_01280 0.14 -1.5 279,669 - AO353_01280 0.14 +0.5 279,669 - AO353_01280 0.14 -0.3 279,672 + AO353_01280 0.14 +0.7 279,672 + AO353_01280 0.14 +0.4 279,673 - AO353_01280 0.15 +0.2 279,673 - AO353_01280 0.15 -0.5 279,678 + AO353_01280 0.16 +0.1
Or see this region's nucleotide sequence