Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00185

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00170 and AO353_00175 overlap by 4 nucleotidesAO353_00175 and AO353_00180 are separated by 68 nucleotidesAO353_00180 and AO353_00185 overlap by 1 nucleotidesAO353_00185 and AO353_00190 are separated by 6 nucleotides AO353_00170: AO353_00170 - lysozyme, at 34,524 to 35,051 _00170 AO353_00175: AO353_00175 - hypothetical protein, at 35,048 to 35,302 _00175 AO353_00180: AO353_00180 - conjugal transfer protein TraR, at 35,371 to 35,580 _00180 AO353_00185: AO353_00185 - phage tail protein, at 35,580 to 36,032 _00185 AO353_00190: AO353_00190 - phage tail protein, at 36,039 to 37,154 _00190 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 34.586 kb on + strand, within AO353_00170at 34.712 kb on + strand, within AO353_00170at 34.861 kb on + strand, within AO353_00170at 34.862 kb on - strand, within AO353_00170at 34.862 kb on - strand, within AO353_00170at 35.003 kb on + strandat 35.004 kb on - strandat 35.004 kb on - strandat 35.004 kb on - strandat 35.379 kb on + strandat 35.614 kb on + strandat 35.659 kb on + strand, within AO353_00185at 35.849 kb on + strand, within AO353_00185at 35.849 kb on + strand, within AO353_00185at 35.850 kb on - strand, within AO353_00185at 36.041 kb on - strandat 36.121 kb on + strandat 36.121 kb on + strandat 36.121 kb on + strandat 36.122 kb on - strandat 36.122 kb on - strandat 36.122 kb on - strandat 36.122 kb on - strandat 36.122 kb on - strandat 36.210 kb on - strand, within AO353_00190at 36.321 kb on + strand, within AO353_00190at 36.321 kb on + strand, within AO353_00190at 36.421 kb on + strand, within AO353_00190at 36.443 kb on - strand, within AO353_00190at 36.443 kb on - strand, within AO353_00190at 36.586 kb on - strand, within AO353_00190at 36.704 kb on - strand, within AO353_00190at 36.704 kb on - strand, within AO353_00190at 36.704 kb on - strand, within AO353_00190at 36.756 kb on + strand, within AO353_00190at 36.756 kb on + strand, within AO353_00190at 36.757 kb on - strand, within AO353_00190at 36.769 kb on + strand, within AO353_00190at 36.769 kb on + strand, within AO353_00190at 36.769 kb on + strand, within AO353_00190at 36.769 kb on + strand, within AO353_00190at 36.770 kb on - strand, within AO353_00190at 36.804 kb on - strand, within AO353_00190

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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34,586 + AO353_00170 0.12 +1.1
34,712 + AO353_00170 0.36 -0.4
34,861 + AO353_00170 0.64 +0.1
34,862 - AO353_00170 0.64 +0.8
34,862 - AO353_00170 0.64 +1.4
35,003 + -0.1
35,004 - +0.1
35,004 - +0.1
35,004 - -0.2
35,379 + -0.7
35,614 + -0.1
35,659 + AO353_00185 0.17 -0.7
35,849 + AO353_00185 0.59 -0.7
35,849 + AO353_00185 0.59 -0.9
35,850 - AO353_00185 0.60 -0.0
36,041 - -0.2
36,121 + +1.0
36,121 + -2.0
36,121 + -2.2
36,122 - -0.9
36,122 - +1.7
36,122 - -0.2
36,122 - -0.1
36,122 - +1.0
36,210 - AO353_00190 0.15 +0.8
36,321 + AO353_00190 0.25 +0.2
36,321 + AO353_00190 0.25 +1.8
36,421 + AO353_00190 0.34 -0.1
36,443 - AO353_00190 0.36 -0.9
36,443 - AO353_00190 0.36 -0.1
36,586 - AO353_00190 0.49 +0.3
36,704 - AO353_00190 0.60 +0.7
36,704 - AO353_00190 0.60 -0.3
36,704 - AO353_00190 0.60 +0.9
36,756 + AO353_00190 0.64 -0.1
36,756 + AO353_00190 0.64 +0.9
36,757 - AO353_00190 0.64 +0.8
36,769 + AO353_00190 0.65 -0.7
36,769 + AO353_00190 0.65 +0.7
36,769 + AO353_00190 0.65 +0.1
36,769 + AO353_00190 0.65 -0.3
36,770 - AO353_00190 0.66 +0.3
36,804 - AO353_00190 0.69 +1.0

Or see this region's nucleotide sequence