Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3476

Experiment: D-Maltose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Maltose (C)
4,477,561	+		BT3475	0.69	-1.8
4,477,565	-		BT3475	0.69	+0.6
4,477,648	-		BT3475	0.72	+0.4
4,477,650	-		BT3475	0.72	+0.1
4,477,668	-		BT3475	0.72	-0.8
4,477,696	+		BT3475	0.73	-0.2
4,477,699	-		BT3475	0.73	+0.7
4,477,749	+		BT3475	0.75	+0.4
4,477,749	+		BT3475	0.75	+1.7
4,477,749	+		BT3475	0.75	-2.0
4,477,749	+		BT3475	0.75	+0.8
4,477,750	-		BT3475	0.75	-2.9
4,477,750	-		BT3475	0.75	-0.1
4,477,755	+		BT3475	0.75	+1.2
4,477,756	-		BT3475	0.75	-0.1
4,477,790	-		BT3475	0.76	+1.0
4,477,790	-		BT3475	0.76	-1.7
4,477,790	-		BT3475	0.76	+0.7
4,477,856	+		BT3475	0.78	+0.1
4,477,856	+		BT3475	0.78	-0.1
4,477,857	-		BT3475	0.78	+0.9
4,477,857	-		BT3475	0.78	-2.0
4,477,859	+		BT3475	0.79	-2.4
4,477,860	-		BT3475	0.79	+0.4
4,477,860	-		BT3475	0.79	-1.6
4,477,891	+		BT3475	0.80	-1.3
4,477,917	-		BT3475	0.80	-0.1
4,477,946	+		BT3475	0.81	+0.5
4,477,960	+		BT3475	0.82	-2.1
4,477,961	-		BT3475	0.82	-0.1
4,477,997	-		BT3475	0.83	-1.7
4,478,084	+		BT3475	0.86	+1.1
4,478,090	-		BT3475	0.86	-1.7
4,478,141	+		BT3475	0.88	-1.6
4,478,142	-		BT3475	0.88	+0.5
4,478,142	-		BT3475	0.88	-0.7
4,478,142	-		BT3475	0.88	+0.7
4,478,152	+		BT3475	0.88	+0.1
4,478,152	+		BT3475	0.88	-2.0
4,478,155	+		BT3475	0.88	-0.2
4,478,155	+		BT3475	0.88	+1.3
4,478,158	+		BT3475	0.88	+0.3
4,478,158	+		BT3475	0.88	+1.4
4,478,159	-		BT3475	0.88	-0.5
4,478,276	+				-0.3
4,478,299	+				+1.2
4,478,299	+				+0.4
4,478,300	-				-0.5
4,478,301	+				-0.1
4,478,301	+				-0.1
4,478,302	-				+0.1
4,478,305	+				-0.8
4,478,305	+				-0.6
4,478,306	-				+0.9
4,478,323	-				-1.5
4,478,336	-				-0.3
4,478,338	+				+0.1
4,478,338	+				+0.2
4,478,339	-				+0.9
4,478,363	-				-1.8
4,478,387	-				-0.2
4,478,390	+				+0.2
4,478,391	-				-0.7
4,478,397	-				-0.5
4,478,397	-				-1.0
4,478,422	+				-0.2
4,478,429	-				-0.5
4,478,448	-				+0.3
4,478,450	+				+0.2
4,478,505	-				-2.5
4,478,529	+				-0.6
4,478,529	+				-0.6
4,478,529	+				-1.7
4,478,529	+				-0.6
4,478,530	-				+0.4
4,478,578	+				-0.5
4,478,628	+				-1.5
4,478,629	-				-2.3
4,478,629	-				+1.7
4,478,629	-				-0.9
4,478,631	-				-1.0
4,478,683	+				+0.5
4,478,684	-				-1.3
4,478,684	-				+0.5
4,478,711	-		BT3476	0.12	-1.8
4,478,755	+		BT3476	0.15	-0.0
4,478,755	+		BT3476	0.15	+0.7
4,478,811	+		BT3476	0.19	-1.0
4,478,812	-		BT3476	0.19	+0.0
4,478,833	+		BT3476	0.20	-0.2
4,478,833	+		BT3476	0.20	-1.2
4,478,914	+		BT3476	0.26	-1.2
4,478,915	-		BT3476	0.26	-0.6
4,478,917	-		BT3476	0.27	-2.2
4,478,978	-		BT3476	0.31	-1.3
4,478,984	+		BT3476	0.31	-2.3
4,478,991	+		BT3476	0.32	-0.0
4,478,992	-		BT3476	0.32	-0.3
4,478,997	+		BT3476	0.32	-2.4
4,478,997	+		BT3476	0.32	-1.5
4,478,998	-		BT3476	0.32	-1.3
4,479,022	+		BT3476	0.34	-0.8
4,479,048	-		BT3476	0.36	+0.6
4,479,079	+		BT3476	0.38	+0.9
4,479,079	+		BT3476	0.38	-1.1
4,479,080	-		BT3476	0.38	-0.8
4,479,138	-		BT3476	0.43	-1.4
4,479,139	+		BT3476	0.43	+0.4
4,479,160	+		BT3476	0.44	-3.1
4,479,222	+		BT3476	0.49	-1.0
4,479,223	-		BT3476	0.49	-3.1
4,479,258	+		BT3476	0.51	-0.1
4,479,259	+		BT3476	0.51	+0.1
4,479,259	+		BT3476	0.51	-2.3
4,479,262	+		BT3476	0.52	-0.2
4,479,298	+		BT3476	0.54	+0.1
4,479,302	+		BT3476	0.55	-0.5
4,479,322	-		BT3476	0.56	-0.0
4,479,323	+		BT3476	0.56	+0.4
4,479,323	+		BT3476	0.56	+1.0
4,479,323	+		BT3476	0.56	-1.4
4,479,324	-		BT3476	0.56	-1.6
4,479,332	+		BT3476	0.57	+0.0
4,479,332	+		BT3476	0.57	+0.0
4,479,332	+		BT3476	0.57	+0.4
4,479,333	-		BT3476	0.57	-0.2
4,479,333	-		BT3476	0.57	+0.8
4,479,336	+		BT3476	0.57	-0.6
4,479,336	+		BT3476	0.57	-2.1
4,479,389	+		BT3476	0.61	-0.4
4,479,389	+		BT3476	0.61	-0.4
4,479,390	-		BT3476	0.61	-0.3
4,479,478	-		BT3476	0.67	-0.6
4,479,506	+		BT3476	0.69	-0.1
4,479,507	-		BT3476	0.70	-2.4
4,479,517	+		BT3476	0.70	-0.4
4,479,518	-		BT3476	0.70	-0.9
4,479,540	-		BT3476	0.72	-2.2
4,479,562	+		BT3476	0.74	+0.2
4,479,599	+		BT3476	0.76	+0.4
4,479,604	+		BT3476	0.77	+0.3
4,479,619	-		BT3476	0.78	-0.5
4,479,642	+		BT3476	0.79	-0.4
4,479,691	+		BT3476	0.83	-2.1
4,479,691	+		BT3476	0.83	+0.6
4,479,706	+		BT3476	0.84	+0.6
4,479,800	-				-0.1
4,479,832	+				+0.1
4,479,853	+				-0.1
4,479,854	-				-1.1
4,479,859	+				+0.1
4,479,860	-				-2.0
4,479,863	+				-0.3
4,479,872	+				+0.7
4,479,997	+				+0.1
4,480,010	+				-1.0
4,480,080	+				-0.4
4,480,080	+				-0.3
4,480,080	+				+0.6
4,480,081	-				-0.6
4,480,081	-				-1.9
4,480,110	-				-2.1
4,480,113	+				+0.0
4,480,161	+				+0.4
4,480,177	-				+0.5
4,480,659	+		BT3477	0.27	+0.2
4,480,715	+		BT3477	0.30	-0.7
4,480,728	+		BT3477	0.30	+0.6
4,480,739	+		BT3477	0.31	-0.8
4,480,836	+		BT3477	0.34	+0.8
4,480,836	+		BT3477	0.34	+1.8
4,480,836	+		BT3477	0.34	+0.4
4,480,865	+		BT3477	0.36	-0.8
4,480,870	+		BT3477	0.36	-0.6
4,480,870	+		BT3477	0.36	+1.1
4,480,871	-		BT3477	0.36	-1.4
4,480,881	+		BT3477	0.36	-0.9