Experiment: copper (II) chloride 2 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19260 and IAI47_19265 overlap by 4 nucleotides IAI47_19265 and IAI47_19270 are separated by 709 nucleotides
IAI47_19260: IAI47_19260 - ABC transporter permease, at 78,367 to 79,392
_19260
IAI47_19265: IAI47_19265 - xylulokinase, at 79,389 to 80,837
_19265
IAI47_19270: IAI47_19270 - alpha/beta fold hydrolase, at 81,547 to 82,311
_19270
Position (kb) 79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 78.400 kb on + strand at 78.411 kb on + strand at 78.412 kb on - strand at 78.447 kb on + strand at 78.492 kb on - strand, within IAI47_19260 at 78.492 kb on - strand, within IAI47_19260 at 78.567 kb on + strand, within IAI47_19260 at 78.567 kb on + strand, within IAI47_19260 at 78.567 kb on + strand, within IAI47_19260 at 78.680 kb on + strand, within IAI47_19260 at 78.680 kb on + strand, within IAI47_19260 at 78.680 kb on + strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.681 kb on - strand, within IAI47_19260 at 78.682 kb on + strand, within IAI47_19260 at 78.682 kb on + strand, within IAI47_19260 at 78.723 kb on - strand, within IAI47_19260 at 78.723 kb on - strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.794 kb on + strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.795 kb on - strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.798 kb on + strand, within IAI47_19260 at 78.799 kb on - strand, within IAI47_19260 at 78.799 kb on - strand, within IAI47_19260 at 78.799 kb on - strand, within IAI47_19260 at 78.799 kb on - strand, within IAI47_19260 at 78.878 kb on - strand, within IAI47_19260 at 78.904 kb on - strand, within IAI47_19260 at 78.933 kb on + strand, within IAI47_19260 at 78.949 kb on - strand, within IAI47_19260 at 79.000 kb on - strand, within IAI47_19260 at 79.000 kb on - strand, within IAI47_19260 at 79.074 kb on + strand, within IAI47_19260 at 79.074 kb on + strand, within IAI47_19260 at 79.074 kb on + strand, within IAI47_19260 at 79.074 kb on + strand, within IAI47_19260 at 79.075 kb on - strand, within IAI47_19260 at 79.075 kb on - strand, within IAI47_19260 at 79.098 kb on + strand, within IAI47_19260 at 79.186 kb on + strand, within IAI47_19260 at 79.248 kb on + strand, within IAI47_19260 at 79.248 kb on + strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.249 kb on - strand, within IAI47_19260 at 79.337 kb on - strand at 79.407 kb on + strand at 79.407 kb on + strand at 79.407 kb on + strand at 79.408 kb on - strand at 79.420 kb on + strand at 79.420 kb on + strand at 79.420 kb on + strand at 79.420 kb on + strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.424 kb on + strand at 79.424 kb on + strand at 79.425 kb on - strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.429 kb on + strand at 79.430 kb on - strand at 79.430 kb on - strand at 79.430 kb on - strand at 79.515 kb on - strand at 79.515 kb on - strand at 79.628 kb on - strand, within IAI47_19265 at 79.628 kb on - strand, within IAI47_19265 at 79.772 kb on + strand, within IAI47_19265 at 79.917 kb on + strand, within IAI47_19265 at 79.917 kb on + strand, within IAI47_19265 at 79.953 kb on - strand, within IAI47_19265 at 79.958 kb on + strand, within IAI47_19265 at 79.958 kb on + strand, within IAI47_19265 at 79.959 kb on - strand, within IAI47_19265 at 79.961 kb on + strand, within IAI47_19265 at 79.961 kb on + strand, within IAI47_19265 at 79.961 kb on + strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.962 kb on - strand, within IAI47_19265 at 79.997 kb on - strand, within IAI47_19265 at 80.025 kb on + strand, within IAI47_19265 at 80.025 kb on + strand, within IAI47_19265 at 80.039 kb on + strand, within IAI47_19265 at 80.040 kb on - strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.047 kb on + strand, within IAI47_19265 at 80.048 kb on - strand, within IAI47_19265 at 80.050 kb on - strand, within IAI47_19265 at 80.073 kb on + strand, within IAI47_19265 at 80.073 kb on + strand, within IAI47_19265 at 80.074 kb on - strand, within IAI47_19265 at 80.074 kb on - strand, within IAI47_19265 at 80.074 kb on - strand, within IAI47_19265 at 80.074 kb on - strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.075 kb on + strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.076 kb on - strand, within IAI47_19265 at 80.081 kb on + strand, within IAI47_19265 at 80.081 kb on + strand, within IAI47_19265 at 80.082 kb on - strand, within IAI47_19265 at 80.123 kb on + strand, within IAI47_19265 at 80.124 kb on - strand, within IAI47_19265 at 80.124 kb on - strand, within IAI47_19265 at 80.188 kb on - strand, within IAI47_19265 at 80.188 kb on - strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.358 kb on + strand, within IAI47_19265 at 80.359 kb on - strand, within IAI47_19265 at 80.359 kb on - strand, within IAI47_19265 at 80.359 kb on - strand, within IAI47_19265 at 80.365 kb on + strand, within IAI47_19265 at 80.365 kb on + strand, within IAI47_19265 at 80.366 kb on - strand, within IAI47_19265 at 80.790 kb on - strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.843 kb on + strand at 80.844 kb on - strand at 80.888 kb on + strand at 80.889 kb on - strand at 80.977 kb on - strand at 80.977 kb on - strand at 80.992 kb on - strand at 80.992 kb on - strand at 80.994 kb on + strand at 80.994 kb on + strand at 80.994 kb on + strand at 80.995 kb on - strand at 81.018 kb on + strand at 81.019 kb on - strand at 81.143 kb on + strand at 81.144 kb on - strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.168 kb on + strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.169 kb on - strand at 81.196 kb on - strand at 81.247 kb on - strand at 81.257 kb on - strand at 81.313 kb on + strand at 81.313 kb on + strand at 81.313 kb on + strand at 81.314 kb on - strand at 81.314 kb on - strand at 81.315 kb on + strand at 81.315 kb on + strand at 81.315 kb on + strand at 81.315 kb on + strand at 81.316 kb on - strand at 81.316 kb on - strand at 81.387 kb on + strand at 81.387 kb on + strand at 81.388 kb on - strand at 81.388 kb on - strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.389 kb on + strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.390 kb on - strand at 81.457 kb on + strand at 81.457 kb on + strand at 81.457 kb on + strand at 81.458 kb on - strand at 81.458 kb on - strand at 81.458 kb on - strand at 81.500 kb on - strand at 81.508 kb on + strand at 81.557 kb on - strand at 81.557 kb on - strand at 81.567 kb on - strand at 81.567 kb on - strand at 81.602 kb on + strand at 81.602 kb on + strand at 81.603 kb on - strand at 81.615 kb on + strand at 81.615 kb on + strand at 81.616 kb on - strand at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.715 kb on - strand, within IAI47_19270 at 81.715 kb on - strand, within IAI47_19270
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic remove 78,400 + -2.0 78,411 + -0.2 78,412 - +3.1 78,447 + -0.5 78,492 - IAI47_19260 0.12 -0.2 78,492 - IAI47_19260 0.12 -0.3 78,567 + IAI47_19260 0.19 -0.0 78,567 + IAI47_19260 0.19 +0.6 78,567 + IAI47_19260 0.19 -3.0 78,680 + IAI47_19260 0.31 -0.0 78,680 + IAI47_19260 0.31 -1.5 78,680 + IAI47_19260 0.31 -0.5 78,681 - IAI47_19260 0.31 +0.2 78,681 - IAI47_19260 0.31 -1.0 78,681 - IAI47_19260 0.31 -1.7 78,681 - IAI47_19260 0.31 -0.3 78,681 - IAI47_19260 0.31 -0.6 78,682 + IAI47_19260 0.31 -0.9 78,682 + IAI47_19260 0.31 -0.0 78,723 - IAI47_19260 0.35 -0.5 78,723 - IAI47_19260 0.35 -0.0 78,794 + IAI47_19260 0.42 -2.2 78,794 + IAI47_19260 0.42 -0.7 78,794 + IAI47_19260 0.42 -0.5 78,794 + IAI47_19260 0.42 +2.6 78,794 + IAI47_19260 0.42 -0.2 78,794 + IAI47_19260 0.42 -1.4 78,794 + IAI47_19260 0.42 -0.7 78,794 + IAI47_19260 0.42 +0.5 78,794 + IAI47_19260 0.42 -0.5 78,794 + IAI47_19260 0.42 -1.1 78,795 - IAI47_19260 0.42 -0.7 78,795 - IAI47_19260 0.42 -0.6 78,795 - IAI47_19260 0.42 +4.4 78,795 - IAI47_19260 0.42 -1.9 78,795 - IAI47_19260 0.42 +2.3 78,795 - IAI47_19260 0.42 -0.4 78,795 - IAI47_19260 0.42 +0.8 78,798 + IAI47_19260 0.42 +2.1 78,798 + IAI47_19260 0.42 -1.2 78,798 + IAI47_19260 0.42 -0.9 78,798 + IAI47_19260 0.42 -1.0 78,798 + IAI47_19260 0.42 +1.2 78,798 + IAI47_19260 0.42 +1.2 78,799 - IAI47_19260 0.42 -1.6 78,799 - IAI47_19260 0.42 +0.6 78,799 - IAI47_19260 0.42 -0.2 78,799 - IAI47_19260 0.42 +0.7 78,878 - IAI47_19260 0.50 -0.6 78,904 - IAI47_19260 0.52 -1.9 78,933 + IAI47_19260 0.55 +0.2 78,949 - IAI47_19260 0.57 +0.5 79,000 - IAI47_19260 0.62 +3.3 79,000 - IAI47_19260 0.62 -1.3 79,074 + IAI47_19260 0.69 -1.6 79,074 + IAI47_19260 0.69 -1.0 79,074 + IAI47_19260 0.69 -0.9 79,074 + IAI47_19260 0.69 +1.0 79,075 - IAI47_19260 0.69 -0.5 79,075 - IAI47_19260 0.69 -0.6 79,098 + IAI47_19260 0.71 +0.2 79,186 + IAI47_19260 0.80 +1.5 79,248 + IAI47_19260 0.86 -1.5 79,248 + IAI47_19260 0.86 +2.2 79,249 - IAI47_19260 0.86 +0.2 79,249 - IAI47_19260 0.86 +0.4 79,249 - IAI47_19260 0.86 +0.1 79,249 - IAI47_19260 0.86 -1.8 79,249 - IAI47_19260 0.86 -0.5 79,337 - -0.0 79,407 + -1.7 79,407 + +2.5 79,407 + -0.3 79,408 - +0.6 79,420 + +3.7 79,420 + -2.2 79,420 + -0.6 79,420 + +3.6 79,421 - +2.0 79,421 - -0.2 79,421 - +1.0 79,421 - +0.9 79,421 - +0.1 79,421 - -1.2 79,421 - -0.6 79,421 - +1.1 79,424 + +0.1 79,424 + +0.4 79,425 - -0.4 79,429 + +1.9 79,429 + -1.2 79,429 + -0.7 79,429 + +0.4 79,429 + +2.3 79,429 + -0.1 79,429 + +0.4 79,430 - +0.5 79,430 - -0.8 79,430 - -1.5 79,515 - +0.2 79,515 - -1.0 79,628 - IAI47_19265 0.16 -1.1 79,628 - IAI47_19265 0.16 +2.3 79,772 + IAI47_19265 0.26 +1.5 79,917 + IAI47_19265 0.36 -0.7 79,917 + IAI47_19265 0.36 -0.2 79,953 - IAI47_19265 0.39 -1.5 79,958 + IAI47_19265 0.39 -0.8 79,958 + IAI47_19265 0.39 +0.9 79,959 - IAI47_19265 0.39 -0.6 79,961 + IAI47_19265 0.39 -1.2 79,961 + IAI47_19265 0.39 -0.4 79,961 + IAI47_19265 0.39 +0.0 79,962 - IAI47_19265 0.40 +0.4 79,962 - IAI47_19265 0.40 -0.1 79,962 - IAI47_19265 0.40 -0.6 79,962 - IAI47_19265 0.40 -0.6 79,962 - IAI47_19265 0.40 -1.1 79,962 - IAI47_19265 0.40 +0.3 79,962 - IAI47_19265 0.40 -1.2 79,997 - IAI47_19265 0.42 -1.1 80,025 + IAI47_19265 0.44 -0.6 80,025 + IAI47_19265 0.44 -0.0 80,039 + IAI47_19265 0.45 -0.1 80,040 - IAI47_19265 0.45 -2.0 80,047 + IAI47_19265 0.45 -1.5 80,047 + IAI47_19265 0.45 +0.1 80,047 + IAI47_19265 0.45 -0.6 80,047 + IAI47_19265 0.45 +0.6 80,047 + IAI47_19265 0.45 -0.7 80,048 - IAI47_19265 0.45 +0.0 80,050 - IAI47_19265 0.46 -0.3 80,073 + IAI47_19265 0.47 -1.3 80,073 + IAI47_19265 0.47 +0.3 80,074 - IAI47_19265 0.47 +0.8 80,074 - IAI47_19265 0.47 +0.1 80,074 - IAI47_19265 0.47 -1.0 80,074 - IAI47_19265 0.47 +0.5 80,075 + IAI47_19265 0.47 -1.4 80,075 + IAI47_19265 0.47 -0.5 80,075 + IAI47_19265 0.47 +1.4 80,075 + IAI47_19265 0.47 +0.4 80,075 + IAI47_19265 0.47 +0.8 80,075 + IAI47_19265 0.47 -0.2 80,075 + IAI47_19265 0.47 -1.8 80,075 + IAI47_19265 0.47 +0.1 80,076 - IAI47_19265 0.47 -0.4 80,076 - IAI47_19265 0.47 +0.2 80,076 - IAI47_19265 0.47 +0.4 80,076 - IAI47_19265 0.47 +0.3 80,076 - IAI47_19265 0.47 -0.8 80,076 - IAI47_19265 0.47 +0.5 80,076 - IAI47_19265 0.47 -1.4 80,081 + IAI47_19265 0.48 +0.7 80,081 + IAI47_19265 0.48 +0.3 80,082 - IAI47_19265 0.48 -0.1 80,123 + IAI47_19265 0.51 -0.2 80,124 - IAI47_19265 0.51 -2.1 80,124 - IAI47_19265 0.51 +0.2 80,188 - IAI47_19265 0.55 -1.3 80,188 - IAI47_19265 0.55 -0.3 80,358 + IAI47_19265 0.67 +0.3 80,358 + IAI47_19265 0.67 +0.1 80,358 + IAI47_19265 0.67 +5.9 80,358 + IAI47_19265 0.67 +0.3 80,358 + IAI47_19265 0.67 -1.2 80,358 + IAI47_19265 0.67 -1.8 80,358 + IAI47_19265 0.67 -0.3 80,359 - IAI47_19265 0.67 -0.2 80,359 - IAI47_19265 0.67 +0.2 80,359 - IAI47_19265 0.67 -0.5 80,365 + IAI47_19265 0.67 +0.1 80,365 + IAI47_19265 0.67 +0.3 80,366 - IAI47_19265 0.67 +0.1 80,790 - +0.7 80,843 + -1.6 80,843 + -1.0 80,843 + -0.8 80,843 + -0.5 80,843 + -0.2 80,843 + +0.5 80,844 - -1.3 80,888 + +0.4 80,889 - -0.2 80,977 - +0.2 80,977 - -0.6 80,992 - +2.7 80,992 - +0.0 80,994 + +0.9 80,994 + +1.4 80,994 + +0.5 80,995 - -0.2 81,018 + +0.3 81,019 - +1.0 81,143 + -0.0 81,144 - +1.4 81,168 + -0.8 81,168 + -0.4 81,168 + +0.7 81,168 + -0.7 81,168 + +0.4 81,168 + -1.6 81,169 - +1.1 81,169 - +1.7 81,169 - -0.3 81,169 - +0.9 81,169 - -1.1 81,169 - -2.2 81,169 - -1.8 81,169 - -1.0 81,169 - -2.5 81,169 - +0.1 81,169 - +0.1 81,196 - +0.4 81,247 - +0.7 81,257 - -1.2 81,313 + -2.2 81,313 + +0.1 81,313 + +0.2 81,314 - -0.9 81,314 - -0.0 81,315 + +1.6 81,315 + +2.2 81,315 + -0.5 81,315 + +2.4 81,316 - -1.1 81,316 - -1.9 81,387 + -0.1 81,387 + -0.5 81,388 - +0.3 81,388 - -1.0 81,389 + -1.1 81,389 + +2.0 81,389 + +0.7 81,389 + +0.4 81,389 + -0.5 81,389 + -1.6 81,389 + +4.4 81,389 + +1.6 81,390 - -1.2 81,390 - -0.3 81,390 - -0.9 81,390 - +1.6 81,390 - +0.2 81,390 - +0.4 81,390 - -1.1 81,457 + -0.8 81,457 + -1.1 81,457 + +2.2 81,458 - +1.2 81,458 - -0.0 81,458 - -0.2 81,500 - +0.5 81,508 + +0.5 81,557 - +1.7 81,557 - -1.8 81,567 - +1.2 81,567 - -0.7 81,602 + -0.6 81,602 + +0.2 81,603 - +2.4 81,615 + +1.4 81,615 + -0.9 81,616 - +0.1 81,685 + IAI47_19270 0.18 -1.0 81,685 + IAI47_19270 0.18 +0.1 81,685 + IAI47_19270 0.18 -2.0 81,685 + IAI47_19270 0.18 +1.3 81,685 + IAI47_19270 0.18 +0.3 81,686 - IAI47_19270 0.18 -0.6 81,686 - IAI47_19270 0.18 +0.5 81,686 - IAI47_19270 0.18 +1.0 81,686 - IAI47_19270 0.18 -0.4 81,686 - IAI47_19270 0.18 -1.2 81,686 - IAI47_19270 0.18 -0.0 81,714 + IAI47_19270 0.22 -0.9 81,714 + IAI47_19270 0.22 +0.1 81,714 + IAI47_19270 0.22 -1.3 81,715 - IAI47_19270 0.22 -0.7 81,715 - IAI47_19270 0.22 -1.3
Or see this region's nucleotide sequence