Experiment: copper (II) chloride 2 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_18915 and IAI47_18920 are separated by 391 nucleotides IAI47_18920 and IAI47_18925 overlap by 47 nucleotides IAI47_18925 and IAI47_18930 are separated by 96 nucleotides IAI47_18930 and IAI47_18935 overlap by 1 nucleotides IAI47_18935 and IAI47_18940 overlap by 4 nucleotides
IAI47_18915: IAI47_18915 - GNAT family N-acetyltransferase, at 20,758 to 21,312
_18915
IAI47_18920: IAI47_18920 - TetR/AcrR family transcriptional regulator, at 21,704 to 22,291
_18920
IAI47_18925: IAI47_18925 - LysR family transcriptional regulator, at 22,245 to 23,138
_18925
IAI47_18930: IAI47_18930 - carboxymuconolactone decarboxylase family protein, at 23,235 to 23,540
_18930
IAI47_18935: IAI47_18935 - tautomerase family protein, at 23,540 to 23,929
_18935
IAI47_18940: IAI47_18940 - DUF4865 family protein, at 23,926 to 24,453
_18940
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.255 kb on + strand, within IAI47_18915 at 21.256 kb on - strand, within IAI47_18915 at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.322 kb on - strand at 21.322 kb on - strand at 21.322 kb on - strand at 21.322 kb on - strand at 21.323 kb on + strand at 21.323 kb on + strand at 21.323 kb on + strand at 21.323 kb on + strand at 21.324 kb on - strand at 21.324 kb on - strand at 21.416 kb on + strand at 21.417 kb on - strand at 21.421 kb on + strand at 21.430 kb on + strand at 21.431 kb on - strand at 21.446 kb on + strand at 21.446 kb on + strand at 21.446 kb on + strand at 21.446 kb on + strand at 21.447 kb on - strand at 21.447 kb on - strand at 21.447 kb on - strand at 21.453 kb on - strand at 21.496 kb on + strand at 21.497 kb on - strand at 21.499 kb on - strand at 21.536 kb on + strand at 21.536 kb on + strand at 21.536 kb on + strand at 21.536 kb on + strand at 21.537 kb on - strand at 21.564 kb on - strand at 21.579 kb on + strand at 21.580 kb on - strand at 21.594 kb on + strand at 21.594 kb on + strand at 21.595 kb on - strand at 21.630 kb on + strand at 21.667 kb on + strand at 21.745 kb on + strand at 21.745 kb on + strand at 21.746 kb on - strand at 21.746 kb on - strand at 21.746 kb on - strand at 21.746 kb on - strand at 21.763 kb on + strand, within IAI47_18920 at 21.763 kb on + strand, within IAI47_18920 at 21.763 kb on + strand, within IAI47_18920 at 21.764 kb on - strand, within IAI47_18920 at 21.780 kb on + strand, within IAI47_18920 at 21.903 kb on + strand, within IAI47_18920 at 21.937 kb on + strand, within IAI47_18920 at 21.937 kb on + strand, within IAI47_18920 at 21.938 kb on - strand, within IAI47_18920 at 21.961 kb on + strand, within IAI47_18920 at 21.961 kb on + strand, within IAI47_18920 at 21.962 kb on - strand, within IAI47_18920 at 21.962 kb on - strand, within IAI47_18920 at 21.962 kb on - strand, within IAI47_18920 at 22.000 kb on + strand, within IAI47_18920 at 22.000 kb on + strand, within IAI47_18920 at 22.001 kb on - strand, within IAI47_18920 at 22.079 kb on + strand, within IAI47_18920 at 22.079 kb on + strand, within IAI47_18920 at 22.079 kb on + strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.174 kb on + strand, within IAI47_18920 at 22.174 kb on + strand, within IAI47_18920 at 22.175 kb on - strand, within IAI47_18920 at 22.175 kb on - strand, within IAI47_18920 at 22.204 kb on + strand, within IAI47_18920 at 22.246 kb on + strand at 22.247 kb on - strand at 22.310 kb on + strand at 22.310 kb on + strand at 22.360 kb on + strand, within IAI47_18925 at 22.360 kb on + strand, within IAI47_18925 at 22.409 kb on + strand, within IAI47_18925 at 22.409 kb on + strand, within IAI47_18925 at 22.409 kb on + strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.431 kb on + strand, within IAI47_18925 at 22.431 kb on + strand, within IAI47_18925 at 22.432 kb on - strand, within IAI47_18925 at 22.432 kb on - strand, within IAI47_18925 at 22.432 kb on - strand, within IAI47_18925 at 22.432 kb on - strand, within IAI47_18925 at 22.434 kb on - strand, within IAI47_18925 at 22.434 kb on - strand, within IAI47_18925 at 22.729 kb on - strand, within IAI47_18925 at 22.729 kb on - strand, within IAI47_18925 at 22.841 kb on + strand, within IAI47_18925 at 22.841 kb on + strand, within IAI47_18925 at 22.842 kb on - strand, within IAI47_18925 at 22.842 kb on - strand, within IAI47_18925 at 22.842 kb on - strand, within IAI47_18925 at 22.845 kb on + strand, within IAI47_18925 at 22.845 kb on + strand, within IAI47_18925 at 22.845 kb on + strand, within IAI47_18925 at 22.845 kb on + strand, within IAI47_18925 at 22.846 kb on - strand, within IAI47_18925 at 22.846 kb on - strand, within IAI47_18925 at 22.918 kb on + strand, within IAI47_18925 at 22.919 kb on - strand, within IAI47_18925 at 22.925 kb on + strand, within IAI47_18925 at 22.926 kb on - strand, within IAI47_18925 at 22.926 kb on - strand, within IAI47_18925 at 22.926 kb on - strand, within IAI47_18925 at 23.132 kb on + strand at 23.132 kb on + strand at 23.132 kb on + strand at 23.149 kb on + strand at 23.197 kb on + strand at 23.203 kb on + strand at 23.203 kb on + strand at 23.203 kb on + strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.318 kb on + strand, within IAI47_18930 at 23.318 kb on + strand, within IAI47_18930 at 23.319 kb on - strand, within IAI47_18930 at 23.319 kb on - strand, within IAI47_18930 at 23.468 kb on + strand, within IAI47_18930 at 23.468 kb on + strand, within IAI47_18930 at 23.469 kb on - strand, within IAI47_18930 at 23.469 kb on - strand, within IAI47_18930 at 23.469 kb on - strand, within IAI47_18930 at 23.485 kb on - strand, within IAI47_18930 at 23.485 kb on - strand, within IAI47_18930 at 23.485 kb on - strand, within IAI47_18930 at 23.531 kb on + strand at 23.573 kb on + strand at 23.574 kb on - strand at 23.593 kb on + strand, within IAI47_18935 at 23.594 kb on - strand, within IAI47_18935 at 23.607 kb on + strand, within IAI47_18935 at 23.607 kb on + strand, within IAI47_18935 at 23.607 kb on + strand, within IAI47_18935 at 23.607 kb on + strand, within IAI47_18935 at 23.608 kb on - strand, within IAI47_18935 at 23.608 kb on - strand, within IAI47_18935 at 23.608 kb on - strand, within IAI47_18935 at 23.695 kb on - strand, within IAI47_18935 at 23.701 kb on + strand, within IAI47_18935 at 23.708 kb on + strand, within IAI47_18935 at 23.708 kb on + strand, within IAI47_18935 at 23.709 kb on - strand, within IAI47_18935 at 23.709 kb on - strand, within IAI47_18935 at 23.709 kb on - strand, within IAI47_18935 at 23.795 kb on + strand, within IAI47_18935 at 23.795 kb on + strand, within IAI47_18935 at 23.860 kb on + strand, within IAI47_18935 at 23.860 kb on + strand, within IAI47_18935 at 23.860 kb on + strand, within IAI47_18935 at 23.861 kb on - strand, within IAI47_18935 at 23.925 kb on + strand at 23.942 kb on - strand at 23.949 kb on + strand at 23.965 kb on + strand at 23.965 kb on + strand at 23.965 kb on + strand at 23.965 kb on + strand at 23.965 kb on + strand at 23.966 kb on - strand at 23.966 kb on - strand at 23.970 kb on + strand at 23.971 kb on - strand at 23.971 kb on - strand at 23.971 kb on - strand at 24.046 kb on + strand, within IAI47_18940 at 24.046 kb on + strand, within IAI47_18940 at 24.046 kb on + strand, within IAI47_18940 at 24.046 kb on + strand, within IAI47_18940 at 24.047 kb on - strand, within IAI47_18940 at 24.047 kb on - strand, within IAI47_18940 at 24.047 kb on - strand, within IAI47_18940 at 24.091 kb on + strand, within IAI47_18940 at 24.091 kb on + strand, within IAI47_18940 at 24.092 kb on - strand, within IAI47_18940 at 24.092 kb on - strand, within IAI47_18940 at 24.103 kb on + strand, within IAI47_18940 at 24.103 kb on + strand, within IAI47_18940 at 24.104 kb on - strand, within IAI47_18940 at 24.104 kb on - strand, within IAI47_18940 at 24.104 kb on - strand, within IAI47_18940 at 24.126 kb on + strand, within IAI47_18940 at 24.127 kb on - strand, within IAI47_18940
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic remove 21,253 + IAI47_18915 0.89 -0.7 21,253 + IAI47_18915 0.89 -0.2 21,253 + IAI47_18915 0.89 +1.5 21,253 + IAI47_18915 0.89 -1.8 21,253 + IAI47_18915 0.89 +1.7 21,253 + IAI47_18915 0.89 -0.0 21,253 + IAI47_18915 0.89 -1.2 21,253 + IAI47_18915 0.89 +2.7 21,253 + IAI47_18915 0.89 -0.8 21,253 + IAI47_18915 0.89 -0.3 21,253 + IAI47_18915 0.89 -0.4 21,254 - IAI47_18915 0.89 -0.4 21,254 - IAI47_18915 0.89 -1.2 21,254 - IAI47_18915 0.89 -1.5 21,254 - IAI47_18915 0.89 -1.1 21,254 - IAI47_18915 0.89 +1.1 21,254 - IAI47_18915 0.89 +0.7 21,255 + IAI47_18915 0.90 -1.0 21,256 - IAI47_18915 0.90 -0.3 21,321 + +0.8 21,321 + +1.0 21,321 + +0.5 21,321 + -0.9 21,321 + +1.3 21,321 + +0.1 21,321 + +1.9 21,321 + +0.2 21,321 + -1.0 21,322 - +0.2 21,322 - +2.5 21,322 - +0.7 21,322 - +1.3 21,323 + +2.6 21,323 + -2.0 21,323 + +0.7 21,323 + +0.3 21,324 - -1.8 21,324 - -0.1 21,416 + -0.6 21,417 - -0.4 21,421 + -2.2 21,430 + -1.6 21,431 - -0.8 21,446 + -0.2 21,446 + -2.0 21,446 + -0.0 21,446 + -0.2 21,447 - +0.4 21,447 - -0.6 21,447 - +0.3 21,453 - +1.6 21,496 + -2.3 21,497 - +1.1 21,499 - -1.9 21,536 + +0.6 21,536 + -1.4 21,536 + +0.4 21,536 + -0.0 21,537 - -1.0 21,564 - -0.9 21,579 + -1.9 21,580 - +0.1 21,594 + -1.0 21,594 + -0.8 21,595 - +0.1 21,630 + -0.6 21,667 + -1.5 21,745 + -0.6 21,745 + +0.9 21,746 - -0.6 21,746 - +0.8 21,746 - -0.6 21,746 - +0.2 21,763 + IAI47_18920 0.10 -1.1 21,763 + IAI47_18920 0.10 -0.6 21,763 + IAI47_18920 0.10 -1.0 21,764 - IAI47_18920 0.10 -0.2 21,780 + IAI47_18920 0.13 +1.1 21,903 + IAI47_18920 0.34 -1.1 21,937 + IAI47_18920 0.40 +0.3 21,937 + IAI47_18920 0.40 +1.3 21,938 - IAI47_18920 0.40 +0.3 21,961 + IAI47_18920 0.44 -1.3 21,961 + IAI47_18920 0.44 +0.3 21,962 - IAI47_18920 0.44 -0.0 21,962 - IAI47_18920 0.44 +0.6 21,962 - IAI47_18920 0.44 -1.2 22,000 + IAI47_18920 0.50 +1.7 22,000 + IAI47_18920 0.50 -0.3 22,001 - IAI47_18920 0.51 +0.3 22,079 + IAI47_18920 0.64 +1.3 22,079 + IAI47_18920 0.64 -0.0 22,079 + IAI47_18920 0.64 -2.0 22,080 - IAI47_18920 0.64 -1.5 22,080 - IAI47_18920 0.64 +1.9 22,080 - IAI47_18920 0.64 -0.3 22,080 - IAI47_18920 0.64 +3.9 22,080 - IAI47_18920 0.64 +1.2 22,080 - IAI47_18920 0.64 -0.6 22,174 + IAI47_18920 0.80 +0.6 22,174 + IAI47_18920 0.80 +1.1 22,175 - IAI47_18920 0.80 +0.4 22,175 - IAI47_18920 0.80 -0.6 22,204 + IAI47_18920 0.85 -0.7 22,246 + +2.0 22,247 - +2.3 22,310 + +0.1 22,310 + +2.5 22,360 + IAI47_18925 0.13 -1.7 22,360 + IAI47_18925 0.13 -0.2 22,409 + IAI47_18925 0.18 +1.1 22,409 + IAI47_18925 0.18 +1.2 22,409 + IAI47_18925 0.18 +0.9 22,410 - IAI47_18925 0.18 +0.4 22,410 - IAI47_18925 0.18 +2.5 22,410 - IAI47_18925 0.18 +0.6 22,410 - IAI47_18925 0.18 +1.4 22,410 - IAI47_18925 0.18 -1.5 22,431 + IAI47_18925 0.21 +0.7 22,431 + IAI47_18925 0.21 +0.4 22,432 - IAI47_18925 0.21 +3.3 22,432 - IAI47_18925 0.21 +0.7 22,432 - IAI47_18925 0.21 -0.9 22,432 - IAI47_18925 0.21 -0.9 22,434 - IAI47_18925 0.21 +0.1 22,434 - IAI47_18925 0.21 +0.3 22,729 - IAI47_18925 0.54 -0.2 22,729 - IAI47_18925 0.54 -0.6 22,841 + IAI47_18925 0.67 +0.2 22,841 + IAI47_18925 0.67 +0.5 22,842 - IAI47_18925 0.67 -1.2 22,842 - IAI47_18925 0.67 -1.3 22,842 - IAI47_18925 0.67 +0.1 22,845 + IAI47_18925 0.67 -0.4 22,845 + IAI47_18925 0.67 -0.4 22,845 + IAI47_18925 0.67 +2.3 22,845 + IAI47_18925 0.67 -0.1 22,846 - IAI47_18925 0.67 +1.4 22,846 - IAI47_18925 0.67 +0.6 22,918 + IAI47_18925 0.75 +0.3 22,919 - IAI47_18925 0.75 -1.5 22,925 + IAI47_18925 0.76 -0.7 22,926 - IAI47_18925 0.76 +1.2 22,926 - IAI47_18925 0.76 -0.6 22,926 - IAI47_18925 0.76 +1.6 23,132 + -0.1 23,132 + +1.5 23,132 + -1.0 23,149 + -0.4 23,197 + +0.7 23,203 + -0.9 23,203 + -0.4 23,203 + +0.6 23,204 - -0.2 23,204 - -1.2 23,204 - +0.3 23,204 - -0.1 23,204 - -1.6 23,204 - -2.0 23,204 - +4.5 23,204 - -0.8 23,318 + IAI47_18930 0.27 -0.2 23,318 + IAI47_18930 0.27 +0.3 23,319 - IAI47_18930 0.27 +0.3 23,319 - IAI47_18930 0.27 +0.3 23,468 + IAI47_18930 0.76 +5.1 23,468 + IAI47_18930 0.76 -1.3 23,469 - IAI47_18930 0.76 +2.0 23,469 - IAI47_18930 0.76 -0.6 23,469 - IAI47_18930 0.76 +0.4 23,485 - IAI47_18930 0.82 -1.1 23,485 - IAI47_18930 0.82 +0.4 23,485 - IAI47_18930 0.82 +0.7 23,531 + -1.5 23,573 + -0.0 23,574 - +3.0 23,593 + IAI47_18935 0.14 -0.6 23,594 - IAI47_18935 0.14 -0.3 23,607 + IAI47_18935 0.17 +5.5 23,607 + IAI47_18935 0.17 +3.7 23,607 + IAI47_18935 0.17 +0.4 23,607 + IAI47_18935 0.17 +4.5 23,608 - IAI47_18935 0.17 -0.8 23,608 - IAI47_18935 0.17 -0.8 23,608 - IAI47_18935 0.17 +0.2 23,695 - IAI47_18935 0.40 +0.7 23,701 + IAI47_18935 0.41 -0.1 23,708 + IAI47_18935 0.43 +1.0 23,708 + IAI47_18935 0.43 -1.0 23,709 - IAI47_18935 0.43 -1.6 23,709 - IAI47_18935 0.43 -1.2 23,709 - IAI47_18935 0.43 -0.6 23,795 + IAI47_18935 0.65 +0.2 23,795 + IAI47_18935 0.65 +0.1 23,860 + IAI47_18935 0.82 -1.3 23,860 + IAI47_18935 0.82 +0.5 23,860 + IAI47_18935 0.82 -0.0 23,861 - IAI47_18935 0.82 +1.5 23,925 + -0.5 23,942 - -0.0 23,949 + +0.7 23,965 + +0.2 23,965 + -0.8 23,965 + -0.9 23,965 + +0.4 23,965 + -1.4 23,966 - +1.4 23,966 - -1.0 23,970 + +1.2 23,971 - -0.0 23,971 - -0.4 23,971 - -0.8 24,046 + IAI47_18940 0.23 -0.9 24,046 + IAI47_18940 0.23 -0.4 24,046 + IAI47_18940 0.23 +0.2 24,046 + IAI47_18940 0.23 +0.5 24,047 - IAI47_18940 0.23 +0.8 24,047 - IAI47_18940 0.23 -0.4 24,047 - IAI47_18940 0.23 +0.3 24,091 + IAI47_18940 0.31 -1.3 24,091 + IAI47_18940 0.31 -0.0 24,092 - IAI47_18940 0.31 -0.5 24,092 - IAI47_18940 0.31 +0.8 24,103 + IAI47_18940 0.34 +0.1 24,103 + IAI47_18940 0.34 -1.5 24,104 - IAI47_18940 0.34 -0.2 24,104 - IAI47_18940 0.34 +1.0 24,104 - IAI47_18940 0.34 +0.2 24,126 + IAI47_18940 0.38 +0.6 24,127 - IAI47_18940 0.38 +1.2
Or see this region's nucleotide sequence