Strain Fitness in Pantoea sp. MT58 around IAI47_16490

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
3,493,326	+		IAI47_16485	0.41	-0.9
3,493,345	+		IAI47_16485	0.43	+0.2
3,493,346	-		IAI47_16485	0.43	-2.3
3,493,346	-		IAI47_16485	0.43	-1.0
3,493,347	+		IAI47_16485	0.43	+0.6
3,493,347	+		IAI47_16485	0.43	-0.5
3,493,347	+		IAI47_16485	0.43	+1.9
3,493,347	+		IAI47_16485	0.43	-1.3
3,493,347	+		IAI47_16485	0.43	+0.3
3,493,348	-		IAI47_16485	0.43	+3.3
3,493,348	-		IAI47_16485	0.43	-1.2
3,493,348	-		IAI47_16485	0.43	-0.5
3,493,348	-		IAI47_16485	0.43	-2.6
3,493,363	+		IAI47_16485	0.44	+1.6
3,493,364	-		IAI47_16485	0.44	-0.3
3,493,366	+		IAI47_16485	0.44	-0.4
3,493,366	+		IAI47_16485	0.44	+0.3
3,493,366	+		IAI47_16485	0.44	+0.1
3,493,366	+		IAI47_16485	0.44	-2.0
3,493,366	+		IAI47_16485	0.44	-0.3
3,493,367	-		IAI47_16485	0.44	-0.3
3,493,367	-		IAI47_16485	0.44	-0.2
3,493,371	+		IAI47_16485	0.44	+0.5
3,493,371	+		IAI47_16485	0.44	-0.9
3,493,371	+		IAI47_16485	0.44	-0.2
3,493,372	-		IAI47_16485	0.44	+0.8
3,493,372	-		IAI47_16485	0.44	-1.3
3,493,372	-		IAI47_16485	0.44	-0.7
3,493,500	-		IAI47_16485	0.53	-1.6
3,493,500	-		IAI47_16485	0.53	-0.4
3,493,521	+		IAI47_16485	0.54	+0.7
3,493,522	-		IAI47_16485	0.54	-0.7
3,493,522	-		IAI47_16485	0.54	-0.5
3,493,522	-		IAI47_16485	0.54	-0.3
3,493,522	-		IAI47_16485	0.54	+0.1
3,493,524	+		IAI47_16485	0.54	+0.7
3,493,524	+		IAI47_16485	0.54	-0.0
3,493,525	-		IAI47_16485	0.54	-0.0
3,493,525	-		IAI47_16485	0.54	-0.4
3,493,525	-		IAI47_16485	0.54	+1.6
3,493,525	-		IAI47_16485	0.54	+0.9
3,493,525	-		IAI47_16485	0.54	+0.3
3,493,554	+		IAI47_16485	0.56	+1.1
3,493,554	+		IAI47_16485	0.56	+4.4
3,493,554	+		IAI47_16485	0.56	+2.0
3,493,554	+		IAI47_16485	0.56	-0.2
3,493,554	+		IAI47_16485	0.56	-0.5
3,493,555	-		IAI47_16485	0.56	-0.3
3,493,555	-		IAI47_16485	0.56	-2.5
3,493,555	-		IAI47_16485	0.56	+1.3
3,493,555	-		IAI47_16485	0.56	+0.2
3,493,555	-		IAI47_16485	0.56	-0.5
3,493,555	-		IAI47_16485	0.56	+0.3
3,493,558	+		IAI47_16485	0.57	-0.1
3,493,558	+		IAI47_16485	0.57	+0.5
3,493,558	+		IAI47_16485	0.57	-0.2
3,493,558	+		IAI47_16485	0.57	+1.7
3,493,558	+		IAI47_16485	0.57	+0.4
3,493,558	+		IAI47_16485	0.57	-0.6
3,493,558	+		IAI47_16485	0.57	+0.3
3,493,558	+		IAI47_16485	0.57	+0.9
3,493,558	+		IAI47_16485	0.57	+1.0
3,493,558	+		IAI47_16485	0.57	+0.4
3,493,558	+		IAI47_16485	0.57	+2.1
3,493,559	-		IAI47_16485	0.57	-1.4
3,493,559	-		IAI47_16485	0.57	-0.6
3,493,559	-		IAI47_16485	0.57	+0.4
3,493,559	-		IAI47_16485	0.57	+2.0
3,493,559	-		IAI47_16485	0.57	-0.7
3,493,559	-		IAI47_16485	0.57	-0.5
3,493,564	+		IAI47_16485	0.57	+1.5
3,493,564	+		IAI47_16485	0.57	+5.5
3,493,564	+		IAI47_16485	0.57	-0.3
3,493,564	+		IAI47_16485	0.57	+0.5
3,493,564	+		IAI47_16485	0.57	+4.4
3,493,564	+		IAI47_16485	0.57	-0.3
3,493,564	+		IAI47_16485	0.57	+0.8
3,493,564	+		IAI47_16485	0.57	+0.6
3,493,564	+		IAI47_16485	0.57	-1.1
3,493,620	-		IAI47_16485	0.61	-0.4
3,493,620	-		IAI47_16485	0.61	+0.2
3,493,731	+		IAI47_16485	0.68	+0.6
3,493,731	+		IAI47_16485	0.68	+5.9
3,493,731	+		IAI47_16485	0.68	+0.1
3,493,732	-		IAI47_16485	0.68	-1.1
3,493,732	-		IAI47_16485	0.68	+0.2
3,493,732	-		IAI47_16485	0.68	-0.7
3,493,732	-		IAI47_16485	0.68	+4.3
3,493,732	-		IAI47_16485	0.68	+5.0
3,493,732	-		IAI47_16485	0.68	-0.8
3,493,759	+		IAI47_16485	0.70	+2.5
3,493,759	+		IAI47_16485	0.70	+1.2
3,493,774	-		IAI47_16485	0.71	-1.1
3,493,861	+		IAI47_16485	0.77	+0.1
3,493,861	+		IAI47_16485	0.77	-1.2
3,493,861	+		IAI47_16485	0.77	+2.8
3,493,861	+		IAI47_16485	0.77	-0.4
3,493,861	+		IAI47_16485	0.77	-0.4
3,493,862	-		IAI47_16485	0.77	-0.8
3,493,897	+		IAI47_16485	0.79	+0.3
3,493,897	+		IAI47_16485	0.79	+2.4
3,493,897	+		IAI47_16485	0.79	+1.1
3,493,897	+		IAI47_16485	0.79	-0.5
3,493,898	-		IAI47_16485	0.79	+1.9
3,493,912	-		IAI47_16485	0.80	-0.5
3,493,912	-		IAI47_16485	0.80	-0.4
3,493,943	+		IAI47_16485	0.82	-1.4
3,493,943	+		IAI47_16485	0.82	+2.0
3,493,944	-		IAI47_16485	0.82	+0.4
3,493,952	+		IAI47_16485	0.83	-1.1
3,494,058	+		IAI47_16485	0.90	+1.2
3,494,140	+				+3.2
3,494,140	+				+2.2
3,494,170	-				-0.2
3,494,209	-				-0.3
3,494,212	+				+0.1
3,494,213	-				+0.1
3,494,226	+				+3.3
3,494,226	+				-0.8
3,494,227	-				-0.1
3,494,227	-				-0.6
3,494,227	-				+0.1
3,494,250	+				+0.6
3,494,251	-				-0.3
3,494,313	+		IAI47_16490	0.18	+6.1
3,494,386	+		IAI47_16490	0.33	-0.8
3,494,386	+		IAI47_16490	0.33	+0.8
3,494,386	+		IAI47_16490	0.33	+0.7
3,494,386	+		IAI47_16490	0.33	-0.7
3,494,386	+		IAI47_16490	0.33	-0.1
3,494,387	-		IAI47_16490	0.33	+0.3
3,494,387	-		IAI47_16490	0.33	+0.3
3,494,387	-		IAI47_16490	0.33	+0.2
3,494,402	+		IAI47_16490	0.36	-1.4
3,494,445	+		IAI47_16490	0.45	+1.8
3,494,568	+		IAI47_16490	0.71	+0.9
3,494,603	+		IAI47_16490	0.79	+0.0
3,494,603	+		IAI47_16490	0.79	-0.8
3,494,642	+		IAI47_16490	0.87	+0.0
3,494,643	-		IAI47_16490	0.87	+1.9
3,494,643	-		IAI47_16490	0.87	+0.1
3,494,678	+				-2.1
3,494,679	-				-1.8
3,494,705	+				+1.3
3,494,719	+				+2.0
3,494,719	+				-0.5
3,494,720	-				-1.2
3,494,720	-				+0.9
3,494,737	-				+1.4
3,494,737	-				+1.9
3,494,745	-				+2.6
3,494,756	+				+0.3
3,494,757	-				+0.0
3,494,757	-				+0.8
3,494,811	+				-0.4
3,494,812	-				-0.8
3,494,820	+				+0.0
3,494,841	+				+2.5
3,494,842	-				-0.8
3,494,842	-				-0.2
3,494,861	-				+0.3
3,494,861	-				+5.1
3,494,874	+				+0.0
3,494,912	+				-0.6
3,494,915	+				-0.5
3,494,949	+				+0.6
3,494,968	-		IAI47_16495	0.11	+1.6
3,494,990	+		IAI47_16495	0.12	-0.5
3,494,991	-		IAI47_16495	0.13	+1.1
3,494,991	-		IAI47_16495	0.13	+0.9
3,495,090	-		IAI47_16495	0.20	+4.5
3,495,214	+		IAI47_16495	0.28	+1.6
3,495,214	+		IAI47_16495	0.28	+1.7
3,495,214	+		IAI47_16495	0.28	-2.2
3,495,214	+		IAI47_16495	0.28	+1.6
3,495,215	-		IAI47_16495	0.28	-0.2
3,495,215	-		IAI47_16495	0.28	-0.1
3,495,215	-		IAI47_16495	0.28	+1.3
3,495,215	-		IAI47_16495	0.28	-0.2
3,495,236	+		IAI47_16495	0.30	+0.1
3,495,236	+		IAI47_16495	0.30	-0.9
3,495,236	+		IAI47_16495	0.30	+6.4
3,495,237	-		IAI47_16495	0.30	-0.7
3,495,304	-		IAI47_16495	0.35	-1.7
3,495,423	+		IAI47_16495	0.43	-0.5
3,495,423	+		IAI47_16495	0.43	+0.1
3,495,529	+		IAI47_16495	0.50	-0.2
3,495,529	+		IAI47_16495	0.50	-1.7
3,495,529	+		IAI47_16495	0.50	-0.1
3,495,529	+		IAI47_16495	0.50	-0.0
3,495,530	-		IAI47_16495	0.50	-0.6
3,495,530	-		IAI47_16495	0.50	+1.3
3,495,530	-		IAI47_16495	0.50	+1.8
3,495,530	-		IAI47_16495	0.50	+0.1
3,495,530	-		IAI47_16495	0.50	+0.2
3,495,549	+		IAI47_16495	0.52	-0.9
3,495,555	+		IAI47_16495	0.52	+0.3
3,495,555	+		IAI47_16495	0.52	+2.5
3,495,555	+		IAI47_16495	0.52	-0.2
3,495,555	+		IAI47_16495	0.52	-0.7
3,495,555	+		IAI47_16495	0.52	-1.1
3,495,555	+		IAI47_16495	0.52	+1.6
3,495,555	+		IAI47_16495	0.52	+5.1
3,495,555	+		IAI47_16495	0.52	-1.3
3,495,556	-		IAI47_16495	0.52	-0.4
3,495,556	-		IAI47_16495	0.52	+1.2
3,495,556	-		IAI47_16495	0.52	-0.4
3,495,556	-		IAI47_16495	0.52	+3.0
3,495,556	-		IAI47_16495	0.52	+0.2
3,495,567	+		IAI47_16495	0.53	-1.4
3,495,568	-		IAI47_16495	0.53	+0.5
3,495,664	-		IAI47_16495	0.60	+0.1