Strain Fitness in Pantoea sp. MT58 around IAI47_15265

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
3,217,228	+		IAI47_15255	0.65	+1.4
3,217,283	-		IAI47_15255	0.73	+2.2
3,217,283	-		IAI47_15255	0.73	-0.2
3,217,283	-		IAI47_15255	0.73	-1.7
3,217,321	-		IAI47_15255	0.78	-0.0
3,217,339	+		IAI47_15255	0.80	+0.0
3,217,339	+		IAI47_15255	0.80	+2.2
3,217,340	-		IAI47_15255	0.80	+1.1
3,217,340	-		IAI47_15255	0.80	-1.0
3,217,450	-				+0.8
3,217,466	-				+0.8
3,217,501	+				+0.1
3,217,501	+				+0.6
3,217,501	+				+0.0
3,217,502	-				-0.4
3,217,502	-				+0.1
3,217,502	-				-1.2
3,217,502	-				+1.6
3,217,502	-				+0.9
3,217,502	-				+3.2
3,217,540	+		IAI47_15260	0.12	-0.0
3,217,540	+		IAI47_15260	0.12	-1.8
3,217,541	-		IAI47_15260	0.12	+0.8
3,217,541	-		IAI47_15260	0.12	-0.1
3,217,569	-		IAI47_15260	0.16	+0.1
3,217,569	-		IAI47_15260	0.16	+0.8
3,217,579	+		IAI47_15260	0.18	-0.2
3,217,579	+		IAI47_15260	0.18	-0.3
3,217,580	-		IAI47_15260	0.18	+0.7
3,217,580	-		IAI47_15260	0.18	+5.1
3,217,580	-		IAI47_15260	0.18	+3.2
3,217,580	-		IAI47_15260	0.18	-0.4
3,217,580	-		IAI47_15260	0.18	+0.4
3,217,580	-		IAI47_15260	0.18	+0.6
3,217,610	+		IAI47_15260	0.22	+0.1
3,217,610	+		IAI47_15260	0.22	-1.5
3,217,610	+		IAI47_15260	0.22	-0.2
3,217,610	+		IAI47_15260	0.22	+1.3
3,217,611	-		IAI47_15260	0.22	-1.4
3,217,728	+		IAI47_15260	0.40	+0.3
3,217,729	-		IAI47_15260	0.40	-0.6
3,217,834	+		IAI47_15260	0.56	-0.5
3,217,835	-		IAI47_15260	0.56	+0.8
3,217,955	-		IAI47_15260	0.75	-0.7
3,218,055	+				+0.5
3,218,055	+				+1.6
3,218,056	-				-0.6
3,218,108	+				+0.3
3,218,108	+				+0.1
3,218,146	+				-1.1
3,218,147	-				-1.2
3,218,196	+		IAI47_15265	0.11	-0.5
3,218,197	-		IAI47_15265	0.12	-0.8
3,218,197	-		IAI47_15265	0.12	+0.5
3,218,217	+		IAI47_15265	0.14	+0.1
3,218,217	+		IAI47_15265	0.14	-0.6
3,218,218	-		IAI47_15265	0.15	+1.1
3,218,218	-		IAI47_15265	0.15	+0.6
3,218,231	+		IAI47_15265	0.17	+1.3
3,218,231	+		IAI47_15265	0.17	+0.3
3,218,231	+		IAI47_15265	0.17	+2.5
3,218,231	+		IAI47_15265	0.17	-0.5
3,218,240	-		IAI47_15265	0.18	-1.6
3,218,280	+		IAI47_15265	0.24	-0.7
3,218,281	-		IAI47_15265	0.24	-0.1
3,218,281	-		IAI47_15265	0.24	-0.8
3,218,346	+		IAI47_15265	0.34	-0.8
3,218,347	-		IAI47_15265	0.34	-0.3
3,218,444	+		IAI47_15265	0.48	-0.7
3,218,444	+		IAI47_15265	0.48	+0.3
3,218,445	-		IAI47_15265	0.49	+2.3
3,218,445	-		IAI47_15265	0.49	-0.6
3,218,445	-		IAI47_15265	0.49	+0.0
3,218,478	+		IAI47_15265	0.54	-1.0
3,218,478	+		IAI47_15265	0.54	-0.4
3,218,479	-		IAI47_15265	0.54	-1.8
3,218,479	-		IAI47_15265	0.54	-0.5
3,218,479	-		IAI47_15265	0.54	+0.3
3,218,527	+		IAI47_15265	0.61	-0.7
3,218,564	-		IAI47_15265	0.66	-0.4
3,218,590	+		IAI47_15265	0.70	-0.9
3,218,590	+		IAI47_15265	0.70	-0.2
3,218,591	-		IAI47_15265	0.70	-1.0
3,218,591	-		IAI47_15265	0.70	-0.9
3,218,610	+		IAI47_15265	0.73	+0.1
3,218,610	+		IAI47_15265	0.73	+1.0
3,218,610	+		IAI47_15265	0.73	-2.4
3,218,610	+		IAI47_15265	0.73	+0.4
3,218,610	+		IAI47_15265	0.73	-1.3
3,218,610	+		IAI47_15265	0.73	-0.0
3,218,610	+		IAI47_15265	0.73	+0.9
3,218,611	-		IAI47_15265	0.73	+0.9
3,218,611	-		IAI47_15265	0.73	-1.8
3,218,611	-		IAI47_15265	0.73	+0.7
3,218,611	-		IAI47_15265	0.73	-0.4
3,218,611	-		IAI47_15265	0.73	+0.7
3,218,611	-		IAI47_15265	0.73	-0.4
3,218,611	-		IAI47_15265	0.73	+0.1
3,218,773	+				+0.8
3,218,773	+				+0.0
3,218,773	+				-0.6
3,218,774	-				+0.1
3,218,852	+				-0.3
3,218,853	-				+0.2
3,218,853	-				-0.1
3,218,937	-		IAI47_15270	0.18	-0.2
3,218,960	+		IAI47_15270	0.20	-0.6
3,218,960	+		IAI47_15270	0.20	+0.4
3,218,960	+		IAI47_15270	0.20	-0.4
3,218,961	-		IAI47_15270	0.21	+0.4
3,218,961	-		IAI47_15270	0.21	-0.0
3,218,961	-		IAI47_15270	0.21	+2.4
3,219,034	+		IAI47_15270	0.30	-0.6
3,219,034	+		IAI47_15270	0.30	-0.1
3,219,034	+		IAI47_15270	0.30	+0.0
3,219,034	+		IAI47_15270	0.30	+2.0
3,219,034	+		IAI47_15270	0.30	-0.8
3,219,034	+		IAI47_15270	0.30	-0.4
3,219,034	+		IAI47_15270	0.30	+0.3
3,219,034	+		IAI47_15270	0.30	-0.5
3,219,034	+		IAI47_15270	0.30	+0.4
3,219,034	+		IAI47_15270	0.30	+0.7
3,219,034	+		IAI47_15270	0.30	-0.4
3,219,035	-		IAI47_15270	0.30	-0.3
3,219,035	-		IAI47_15270	0.30	+0.2
3,219,035	-		IAI47_15270	0.30	+0.2
3,219,035	-		IAI47_15270	0.30	-0.6
3,219,035	-		IAI47_15270	0.30	-0.1
3,219,035	-		IAI47_15270	0.30	-1.1
3,219,035	-		IAI47_15270	0.30	+0.3
3,219,035	-		IAI47_15270	0.30	+1.8
3,219,035	-		IAI47_15270	0.30	+3.8
3,219,035	-		IAI47_15270	0.30	+0.2
3,219,055	+		IAI47_15270	0.33	+0.3
3,219,055	+		IAI47_15270	0.33	+1.6
3,219,055	+		IAI47_15270	0.33	-0.8
3,219,055	+		IAI47_15270	0.33	+0.9
3,219,055	+		IAI47_15270	0.33	-0.7
3,219,056	-		IAI47_15270	0.33	-0.3
3,219,056	-		IAI47_15270	0.33	-0.4
3,219,077	+		IAI47_15270	0.35	+0.2
3,219,077	+		IAI47_15270	0.35	+4.9
3,219,077	+		IAI47_15270	0.35	-1.9
3,219,077	+		IAI47_15270	0.35	-0.3
3,219,078	-		IAI47_15270	0.35	+0.7
3,219,078	-		IAI47_15270	0.35	+6.2
3,219,078	-		IAI47_15270	0.35	+3.5
3,219,085	+		IAI47_15270	0.36	-0.8
3,219,093	+		IAI47_15270	0.37	+0.8
3,219,093	+		IAI47_15270	0.37	+1.0
3,219,093	+		IAI47_15270	0.37	-1.1
3,219,138	+		IAI47_15270	0.43	-1.0
3,219,138	+		IAI47_15270	0.43	+0.9
3,219,216	+		IAI47_15270	0.53	+1.2
3,219,216	+		IAI47_15270	0.53	+4.9
3,219,216	+		IAI47_15270	0.53	-1.3
3,219,217	-		IAI47_15270	0.53	-1.2
3,219,217	-		IAI47_15270	0.53	-1.4
3,219,217	-		IAI47_15270	0.53	+0.2
3,219,217	-		IAI47_15270	0.53	+0.8
3,219,238	+		IAI47_15270	0.56	-0.4
3,219,238	+		IAI47_15270	0.56	+0.6
3,219,239	-		IAI47_15270	0.56	+5.9
3,219,239	-		IAI47_15270	0.56	+1.3
3,219,248	+		IAI47_15270	0.57	-0.4
3,219,248	+		IAI47_15270	0.57	+2.8
3,219,248	+		IAI47_15270	0.57	-1.2
3,219,249	-		IAI47_15270	0.57	+6.0
3,219,249	-		IAI47_15270	0.57	+0.4
3,219,281	+		IAI47_15270	0.61	+0.5
3,219,281	+		IAI47_15270	0.61	+1.2
3,219,281	+		IAI47_15270	0.61	+0.2
3,219,282	-		IAI47_15270	0.61	-1.5
3,219,296	+		IAI47_15270	0.63	-0.0
3,219,297	-		IAI47_15270	0.63	-0.2
3,219,325	+		IAI47_15270	0.67	-0.8
3,219,326	-		IAI47_15270	0.67	+0.2
3,219,326	-		IAI47_15270	0.67	+0.8
3,219,368	+		IAI47_15270	0.72	-0.4
3,219,368	+		IAI47_15270	0.72	-0.1
3,219,369	-		IAI47_15270	0.73	+0.6
3,219,391	+		IAI47_15270	0.75	-0.8
3,219,392	-		IAI47_15270	0.75	+0.8
3,219,412	+		IAI47_15270	0.78	+3.0
3,219,412	+		IAI47_15270	0.78	-0.6
3,219,412	+		IAI47_15270	0.78	-0.8
3,219,412	+		IAI47_15270	0.78	-0.9
3,219,413	-		IAI47_15270	0.78	-0.8
3,219,413	-		IAI47_15270	0.78	+0.7
3,219,546	+				-0.3
3,219,546	+				+0.3
3,219,546	+				-0.5
3,219,546	+				-0.3
3,219,546	+				-1.7
3,219,547	-				-1.0
3,219,547	-				-1.9
3,219,547	-				-0.3
3,219,547	-				-0.4
3,219,547	-				-1.0
3,219,585	+				+0.3
3,219,604	-				-0.8
3,219,710	+				-0.7
3,219,711	-				+1.2