Strain Fitness in Pantoea sp. MT58 around IAI47_12335

Experiment: copper (II) chloride 2 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 2 uM, anaerobic
2,604,818	-		IAI47_12325	0.63	-0.3
2,604,818	-		IAI47_12325	0.63	-0.3
2,604,818	-		IAI47_12325	0.63	-1.3
2,604,818	-		IAI47_12325	0.63	+0.1
2,604,818	-		IAI47_12325	0.63	+2.4
2,604,819	+		IAI47_12325	0.63	-0.3
2,604,819	+		IAI47_12325	0.63	+0.8
2,604,819	+		IAI47_12325	0.63	+0.1
2,604,844	-		IAI47_12325	0.65	-0.3
2,604,844	-		IAI47_12325	0.65	+2.2
2,604,888	+		IAI47_12325	0.69	-0.2
2,604,888	+		IAI47_12325	0.69	-0.6
2,604,894	+		IAI47_12325	0.69	+0.7
2,604,895	-		IAI47_12325	0.69	+0.3
2,604,959	+		IAI47_12325	0.75	+0.2
2,604,959	+		IAI47_12325	0.75	+0.1
2,604,960	-		IAI47_12325	0.75	-1.1
2,604,960	-		IAI47_12325	0.75	-0.1
2,604,984	+		IAI47_12325	0.77	+2.2
2,604,984	+		IAI47_12325	0.77	-1.1
2,605,022	+		IAI47_12325	0.80	+0.7
2,605,022	+		IAI47_12325	0.80	-0.4
2,605,023	-		IAI47_12325	0.80	+0.8
2,605,060	+		IAI47_12325	0.83	-1.5
2,605,060	+		IAI47_12325	0.83	-0.2
2,605,060	+		IAI47_12325	0.83	+1.0
2,605,060	+		IAI47_12325	0.83	+0.8
2,605,061	-		IAI47_12325	0.83	-0.5
2,605,061	-		IAI47_12325	0.83	+1.7
2,605,061	-		IAI47_12325	0.83	-2.5
2,605,069	+		IAI47_12325	0.84	-0.4
2,605,069	+		IAI47_12325	0.84	-0.3
2,605,243	+				-0.5
2,605,244	-				-0.4
2,605,245	+				+3.6
2,605,245	+				-0.4
2,605,245	+				-0.1
2,605,245	+				-0.4
2,605,245	-				+0.4
2,605,246	-				+0.3
2,605,246	-				+0.0
2,605,246	-				+3.2
2,605,246	-				-0.9
2,605,246	-				-0.3
2,605,246	-				-0.6
2,605,246	-				-1.2
2,605,246	-				+0.6
2,605,246	-				-1.1
2,605,246	-				+0.9
2,605,340	+		IAI47_12330	0.16	+1.5
2,605,341	-		IAI47_12330	0.16	-0.4
2,605,341	-		IAI47_12330	0.16	-0.1
2,605,355	-		IAI47_12330	0.18	-0.2
2,605,398	+		IAI47_12330	0.26	-0.3
2,605,399	-		IAI47_12330	0.26	-1.0
2,605,455	-		IAI47_12330	0.36	-0.1
2,605,455	-		IAI47_12330	0.36	+0.7
2,605,524	+		IAI47_12330	0.48	-0.0
2,605,530	+		IAI47_12330	0.49	-1.4
2,605,531	-		IAI47_12330	0.49	-0.7
2,605,531	-		IAI47_12330	0.49	-0.2
2,605,544	+		IAI47_12330	0.51	+0.7
2,605,545	-		IAI47_12330	0.52	-0.5
2,605,545	-		IAI47_12330	0.52	+1.5
2,605,545	-		IAI47_12330	0.52	-1.4
2,605,545	-		IAI47_12330	0.52	+1.4
2,605,566	+		IAI47_12330	0.55	+1.9
2,605,804	-				-0.5
2,605,826	+				-3.1
2,605,827	-				+0.4
2,605,827	-				+1.9
2,605,893	+				+2.9
2,605,893	+				+1.2
2,605,893	+				+1.9
2,605,894	-				+0.4
2,605,894	-				+1.0
2,605,894	-				+0.4
2,605,896	+				+0.0
2,605,935	+				-0.1
2,605,935	+				+2.6
2,605,935	+				-0.1
2,605,936	-				-1.7
2,605,956	+				-0.6
2,605,957	-				+4.9
2,605,957	-				-0.1
2,605,957	-				+0.0
2,605,957	-				-0.1
2,606,006	+				-0.2
2,606,006	+				-1.8
2,606,035	+				+1.7
2,606,035	+				+1.2
2,606,035	+				-1.7
2,606,035	+				-1.4
2,606,035	+				+0.6
2,606,035	+				-1.5
2,606,036	-				-0.4
2,606,036	-				-1.6
2,606,036	-				-1.8
2,606,039	+				-1.4
2,606,039	+				-0.8
2,606,040	-				-1.7
2,606,040	-				-1.5
2,606,040	-				+0.6
2,606,040	-				+1.0
2,606,160	+		IAI47_12335	0.15	+0.8
2,606,161	-		IAI47_12335	0.15	-1.3
2,606,161	-		IAI47_12335	0.15	+0.8
2,606,173	-		IAI47_12335	0.15	+1.4
2,606,227	-		IAI47_12335	0.18	-0.4
2,606,243	+		IAI47_12335	0.18	+0.6
2,606,269	+		IAI47_12335	0.20	+2.5
2,606,269	+		IAI47_12335	0.20	-0.2
2,606,270	-		IAI47_12335	0.20	-0.9
2,606,270	-		IAI47_12335	0.20	-0.5
2,606,270	-		IAI47_12335	0.20	-1.0
2,606,313	-		IAI47_12335	0.21	+1.5
2,606,448	+		IAI47_12335	0.27	-0.6
2,606,720	+		IAI47_12335	0.39	-1.4
2,606,720	+		IAI47_12335	0.39	+0.7
2,606,787	+		IAI47_12335	0.42	+0.2
2,606,787	+		IAI47_12335	0.42	-0.1
2,606,788	-		IAI47_12335	0.42	+0.2
2,606,788	-		IAI47_12335	0.42	+0.7
2,606,788	-		IAI47_12335	0.42	+0.3
2,606,788	-		IAI47_12335	0.42	+1.3
2,606,788	-		IAI47_12335	0.42	-1.4
2,606,794	-		IAI47_12335	0.42	-0.3
2,606,832	+		IAI47_12335	0.44	-0.8
2,606,832	+		IAI47_12335	0.44	+0.0
2,606,832	+		IAI47_12335	0.44	-3.0
2,606,832	+		IAI47_12335	0.44	-0.2
2,606,833	-		IAI47_12335	0.44	-1.3
2,606,838	+		IAI47_12335	0.44	+1.0
2,606,839	-		IAI47_12335	0.44	-0.4
2,606,931	+		IAI47_12335	0.48	-2.3
2,606,931	+		IAI47_12335	0.48	+1.0
2,606,932	-		IAI47_12335	0.48	-1.5
2,606,932	-		IAI47_12335	0.48	+0.7
2,606,932	-		IAI47_12335	0.48	+1.4
2,606,955	+		IAI47_12335	0.49	-0.6
2,606,956	-		IAI47_12335	0.49	+0.2
2,606,976	+		IAI47_12335	0.50	-0.5
2,607,072	+		IAI47_12335	0.54	-0.1
2,607,073	-		IAI47_12335	0.54	-2.0
2,607,134	+		IAI47_12335	0.57	+0.8
2,607,134	+		IAI47_12335	0.57	+0.1
2,607,135	-		IAI47_12335	0.57	-0.7
2,607,148	+		IAI47_12335	0.58	-0.9
2,607,148	+		IAI47_12335	0.58	+2.4
2,607,148	+		IAI47_12335	0.58	+0.2
2,607,149	-		IAI47_12335	0.58	-1.1
2,607,149	-		IAI47_12335	0.58	-1.1
2,607,149	-		IAI47_12335	0.58	+0.4
2,607,151	+		IAI47_12335	0.58	-1.3
2,607,151	+		IAI47_12335	0.58	+0.5
2,607,151	+		IAI47_12335	0.58	-1.3
2,607,151	+		IAI47_12335	0.58	-0.2
2,607,151	+		IAI47_12335	0.58	-0.3
2,607,151	+		IAI47_12335	0.58	-0.8
2,607,152	-		IAI47_12335	0.58	+1.1
2,607,152	-		IAI47_12335	0.58	-0.3
2,607,152	-		IAI47_12335	0.58	-1.1
2,607,152	-		IAI47_12335	0.58	-0.4
2,607,152	-		IAI47_12335	0.58	+1.5
2,607,152	-		IAI47_12335	0.58	-0.9
2,607,152	-		IAI47_12335	0.58	-0.6
2,607,152	-		IAI47_12335	0.58	-0.9
2,607,152	-		IAI47_12335	0.58	-0.2
2,607,160	+		IAI47_12335	0.58	-0.3
2,607,161	-		IAI47_12335	0.58	-0.4
2,607,161	-		IAI47_12335	0.58	-0.0
2,607,161	-		IAI47_12335	0.58	-0.4
2,607,182	+		IAI47_12335	0.59	-1.3
2,607,183	-		IAI47_12335	0.59	+0.4
2,607,183	-		IAI47_12335	0.59	-0.1
2,607,183	-		IAI47_12335	0.59	+0.6
2,607,183	-		IAI47_12335	0.59	-1.4
2,607,345	+		IAI47_12335	0.66	-0.9
2,607,345	+		IAI47_12335	0.66	-0.4
2,607,345	+		IAI47_12335	0.66	-0.6
2,607,346	-		IAI47_12335	0.66	+2.2
2,607,346	-		IAI47_12335	0.66	-1.1
2,607,362	+		IAI47_12335	0.67	+1.4
2,607,362	+		IAI47_12335	0.67	-1.2
2,607,362	+		IAI47_12335	0.67	-0.7
2,607,363	-		IAI47_12335	0.67	+0.0
2,607,363	-		IAI47_12335	0.67	-1.4
2,607,363	-		IAI47_12335	0.67	-1.4
2,607,363	-		IAI47_12335	0.67	+0.9
2,607,449	+		IAI47_12335	0.71	+0.0
2,607,449	+		IAI47_12335	0.71	-0.2
2,607,449	+		IAI47_12335	0.71	-0.2
2,607,450	-		IAI47_12335	0.71	+0.5
2,607,450	-		IAI47_12335	0.71	+0.1
2,607,503	+		IAI47_12335	0.73	-1.1
2,607,504	-		IAI47_12335	0.73	-0.9
2,607,541	+		IAI47_12335	0.75	+0.5
2,607,542	-		IAI47_12335	0.75	+2.2
2,607,542	-		IAI47_12335	0.75	-0.3
2,607,543	-		IAI47_12335	0.75	-0.2
2,607,551	+		IAI47_12335	0.75	+0.1
2,607,567	+		IAI47_12335	0.76	-1.5
2,607,596	+		IAI47_12335	0.77	-0.6
2,607,596	+		IAI47_12335	0.77	+0.9
2,607,596	+		IAI47_12335	0.77	+0.3
2,607,597	-		IAI47_12335	0.77	-1.3
2,607,597	-		IAI47_12335	0.77	+1.9
2,607,597	-		IAI47_12335	0.77	+0.4
2,607,953	+				-0.8
2,607,953	+				+1.9
2,607,953	+				-0.6
2,607,953	+				-1.0
2,607,954	-				-0.2
2,607,954	-				-1.1
2,607,954	-				+4.8
2,607,966	+				-0.2
2,608,147	+				-1.4
2,608,147	-				-0.5
2,608,148	-				-0.4
2,608,148	-				+0.7
2,608,173	+		IAI47_12340	0.10	+0.1
2,608,173	+		IAI47_12340	0.10	-0.2
2,608,173	+		IAI47_12340	0.10	+0.4
2,608,173	+		IAI47_12340	0.10	+0.2
2,608,194	+		IAI47_12340	0.14	+4.8
2,608,206	+		IAI47_12340	0.16	-0.1
2,608,206	+		IAI47_12340	0.16	-1.5
2,608,206	+		IAI47_12340	0.16	-1.4
2,608,206	+		IAI47_12340	0.16	-0.5
2,608,207	-		IAI47_12340	0.16	-0.2
2,608,207	-		IAI47_12340	0.16	+0.4
2,608,207	-		IAI47_12340	0.16	-1.2
2,608,235	+		IAI47_12340	0.20	+0.6
2,608,236	+		IAI47_12340	0.21	-0.5
2,608,236	+		IAI47_12340	0.21	+0.1
2,608,236	+		IAI47_12340	0.21	-0.2
2,608,236	+		IAI47_12340	0.21	+0.2
2,608,236	+		IAI47_12340	0.21	+1.6
2,608,236	+		IAI47_12340	0.21	+0.6
2,608,236	+		IAI47_12340	0.21	-0.1
2,608,236	+		IAI47_12340	0.21	-0.2
2,608,236	+		IAI47_12340	0.21	-1.4
2,608,236	+		IAI47_12340	0.21	-1.8
2,608,236	+		IAI47_12340	0.21	+0.1
2,608,237	-		IAI47_12340	0.21	-0.6
2,608,237	-		IAI47_12340	0.21	-1.2
2,608,237	-		IAI47_12340	0.21	-0.1
2,608,254	+		IAI47_12340	0.23	-1.7
2,608,254	+		IAI47_12340	0.23	-1.0
2,608,254	+		IAI47_12340	0.23	-1.1
2,608,254	+		IAI47_12340	0.23	+0.8
2,608,254	+		IAI47_12340	0.23	+1.8
2,608,255	-		IAI47_12340	0.24	+0.4
2,608,255	-		IAI47_12340	0.24	+0.7
2,608,476	+		IAI47_12340	0.60	-0.2
2,608,476	+		IAI47_12340	0.60	-0.6
2,608,476	+		IAI47_12340	0.60	-1.8
2,608,476	+		IAI47_12340	0.60	+1.6
2,608,581	+		IAI47_12340	0.77	-1.2
2,608,582	-		IAI47_12340	0.77	+0.0
2,608,606	-		IAI47_12340	0.81	+1.2
2,608,690	+				+0.5
2,608,690	+				+0.2
2,608,690	+				-0.7
2,608,691	-				-0.9
2,608,691	-				-1.8
2,608,691	-				-0.1
2,608,709	-				+2.4
2,608,726	-				+0.6
2,608,731	+				-0.8
2,608,744	-				+0.2
2,608,749	-				-1.3
2,608,805	+		IAI47_12345	0.22	+0.5
2,608,805	+		IAI47_12345	0.22	+0.3
2,608,805	+		IAI47_12345	0.22	+0.4
2,608,805	+		IAI47_12345	0.22	+1.0
2,608,806	-		IAI47_12345	0.22	+2.1
2,608,806	-		IAI47_12345	0.22	-0.8
2,608,815	-		IAI47_12345	0.25	+1.6
2,608,849	+		IAI47_12345	0.33	+4.4
2,608,874	-		IAI47_12345	0.39	-0.9
2,608,874	-		IAI47_12345	0.39	-1.4
2,608,874	-		IAI47_12345	0.39	+0.2
2,608,880	+		IAI47_12345	0.40	-1.6
2,608,880	+		IAI47_12345	0.40	+0.1
2,608,930	+		IAI47_12345	0.52	+1.8
2,608,930	+		IAI47_12345	0.52	+0.1
2,608,930	+		IAI47_12345	0.52	+0.7
2,608,931	-		IAI47_12345	0.53	-1.3
2,608,931	-		IAI47_12345	0.53	+0.6
2,608,963	+		IAI47_12345	0.60	-0.6
2,608,964	-		IAI47_12345	0.61	+0.7
2,608,964	-		IAI47_12345	0.61	-1.6
2,608,987	+		IAI47_12345	0.66	-0.8
2,608,988	-		IAI47_12345	0.66	-0.8
2,608,988	-		IAI47_12345	0.66	-0.7
2,608,988	-		IAI47_12345	0.66	+0.2
2,608,988	-		IAI47_12345	0.66	+1.7
2,608,988	-		IAI47_12345	0.66	+0.2
2,608,988	-		IAI47_12345	0.66	+0.6
2,608,993	+		IAI47_12345	0.68	+2.0
2,608,993	+		IAI47_12345	0.68	-0.6
2,608,993	+		IAI47_12345	0.68	+1.1
2,608,994	-		IAI47_12345	0.68	-0.8
2,608,994	-		IAI47_12345	0.68	-0.1
2,608,994	-		IAI47_12345	0.68	+0.3
2,608,994	-		IAI47_12345	0.68	+0.5
2,608,994	-		IAI47_12345	0.68	+2.6
2,608,994	-		IAI47_12345	0.68	-0.4
2,608,994	-		IAI47_12345	0.68	+0.4
2,608,994	-		IAI47_12345	0.68	-0.7
2,608,994	-		IAI47_12345	0.68	-1.9
2,609,044	+		IAI47_12345	0.80	+4.8
2,609,045	-		IAI47_12345	0.80	-0.1
2,609,048	+		IAI47_12345	0.81	-0.9
2,609,048	+		IAI47_12345	0.81	-1.4
2,609,048	+		IAI47_12345	0.81	+0.3
2,609,049	-		IAI47_12345	0.81	+0.6
2,609,049	-		IAI47_12345	0.81	-1.3