Strain Fitness in Pantoea sp. MT58 around IAI47_04570

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04565 and IAI47_04570 are separated by 85 nucleotidesIAI47_04570 and IAI47_04575 are separated by 0 nucleotidesIAI47_04575 and IAI47_04580 are separated by 255 nucleotides IAI47_04565: IAI47_04565 - homocysteine S-methyltransferase, at 961,149 to 962,084 _04565 IAI47_04570: IAI47_04570 - hypothetical protein, at 962,170 to 962,589 _04570 IAI47_04575: IAI47_04575 - spermidine N1-acetyltransferase, at 962,590 to 963,135 _04575 IAI47_04580: IAI47_04580 - ABC transporter ATP-binding protein, at 963,391 to 964,068 _04580 Position (kb) 962 963Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 961.177 kb on + strandat 961.177 kb on + strandat 961.178 kb on - strandat 961.299 kb on + strand, within IAI47_04565at 961.299 kb on + strand, within IAI47_04565at 961.299 kb on + strand, within IAI47_04565at 961.299 kb on + strand, within IAI47_04565at 961.300 kb on - strand, within IAI47_04565at 961.300 kb on - strand, within IAI47_04565at 961.300 kb on - strand, within IAI47_04565at 961.311 kb on + strand, within IAI47_04565at 961.311 kb on + strand, within IAI47_04565at 961.312 kb on - strand, within IAI47_04565at 961.312 kb on - strand, within IAI47_04565at 961.312 kb on - strand, within IAI47_04565at 961.317 kb on + strand, within IAI47_04565at 961.356 kb on + strand, within IAI47_04565at 961.356 kb on + strand, within IAI47_04565at 961.461 kb on + strand, within IAI47_04565at 961.462 kb on - strand, within IAI47_04565at 961.518 kb on + strand, within IAI47_04565at 961.518 kb on + strand, within IAI47_04565at 961.518 kb on + strand, within IAI47_04565at 961.519 kb on - strand, within IAI47_04565at 961.519 kb on - strand, within IAI47_04565at 961.519 kb on - strand, within IAI47_04565at 961.549 kb on - strand, within IAI47_04565at 961.549 kb on - strand, within IAI47_04565at 961.560 kb on + strand, within IAI47_04565at 961.560 kb on + strand, within IAI47_04565at 961.560 kb on + strand, within IAI47_04565at 961.560 kb on + strand, within IAI47_04565at 961.561 kb on - strand, within IAI47_04565at 961.561 kb on - strand, within IAI47_04565at 961.561 kb on - strand, within IAI47_04565at 961.561 kb on - strand, within IAI47_04565at 961.561 kb on - strand, within IAI47_04565at 961.730 kb on + strand, within IAI47_04565at 961.730 kb on + strand, within IAI47_04565at 961.751 kb on + strand, within IAI47_04565at 961.751 kb on + strand, within IAI47_04565at 961.751 kb on + strand, within IAI47_04565at 961.752 kb on - strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.923 kb on + strand, within IAI47_04565at 961.924 kb on - strand, within IAI47_04565at 961.924 kb on - strand, within IAI47_04565at 962.082 kb on + strandat 962.082 kb on + strandat 962.083 kb on - strandat 962.083 kb on - strandat 962.083 kb on - strandat 962.083 kb on - strandat 962.083 kb on - strandat 962.106 kb on + strandat 962.106 kb on + strandat 962.106 kb on + strandat 962.107 kb on - strandat 962.135 kb on - strandat 962.135 kb on - strandat 962.212 kb on - strand, within IAI47_04570at 962.212 kb on - strand, within IAI47_04570at 962.308 kb on + strand, within IAI47_04570at 962.368 kb on + strand, within IAI47_04570at 962.369 kb on - strand, within IAI47_04570at 962.369 kb on - strand, within IAI47_04570at 962.386 kb on + strand, within IAI47_04570at 962.387 kb on - strand, within IAI47_04570at 962.387 kb on - strand, within IAI47_04570at 962.413 kb on + strand, within IAI47_04570at 962.414 kb on - strand, within IAI47_04570at 962.424 kb on + strand, within IAI47_04570at 962.433 kb on + strand, within IAI47_04570at 962.434 kb on - strand, within IAI47_04570at 962.458 kb on + strand, within IAI47_04570at 962.459 kb on - strand, within IAI47_04570at 962.472 kb on + strand, within IAI47_04570at 962.472 kb on + strand, within IAI47_04570at 962.480 kb on + strand, within IAI47_04570at 962.480 kb on + strand, within IAI47_04570at 962.480 kb on + strand, within IAI47_04570at 962.481 kb on - strand, within IAI47_04570at 962.481 kb on - strand, within IAI47_04570at 962.519 kb on - strand, within IAI47_04570at 962.530 kb on + strand, within IAI47_04570at 962.530 kb on + strand, within IAI47_04570at 962.530 kb on + strand, within IAI47_04570at 962.531 kb on - strand, within IAI47_04570at 962.531 kb on - strand, within IAI47_04570at 962.531 kb on - strand, within IAI47_04570at 962.531 kb on - strand, within IAI47_04570at 962.531 kb on - strand, within IAI47_04570at 962.629 kb on - strandat 962.629 kb on - strandat 962.642 kb on + strandat 962.642 kb on + strandat 962.642 kb on + strandat 962.642 kb on + strandat 962.642 kb on + strandat 962.643 kb on - strandat 962.643 kb on - strandat 962.643 kb on - strandat 962.643 kb on - strandat 962.643 kb on - strandat 962.681 kb on + strand, within IAI47_04575at 962.682 kb on - strand, within IAI47_04575at 962.692 kb on - strand, within IAI47_04575at 962.709 kb on + strand, within IAI47_04575at 962.709 kb on + strand, within IAI47_04575at 962.709 kb on + strand, within IAI47_04575at 962.710 kb on - strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.744 kb on + strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.745 kb on - strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.748 kb on + strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.749 kb on - strand, within IAI47_04575at 962.786 kb on + strand, within IAI47_04575at 962.786 kb on + strand, within IAI47_04575at 962.787 kb on - strand, within IAI47_04575at 962.787 kb on - strand, within IAI47_04575at 962.787 kb on - strand, within IAI47_04575at 962.787 kb on - strand, within IAI47_04575at 962.787 kb on - strand, within IAI47_04575at 962.793 kb on + strand, within IAI47_04575at 962.793 kb on + strand, within IAI47_04575at 962.793 kb on + strand, within IAI47_04575at 962.793 kb on + strand, within IAI47_04575at 962.793 kb on + strand, within IAI47_04575at 962.794 kb on - strand, within IAI47_04575at 962.794 kb on - strand, within IAI47_04575at 962.794 kb on - strand, within IAI47_04575at 962.795 kb on + strand, within IAI47_04575at 962.795 kb on + strand, within IAI47_04575at 962.795 kb on + strand, within IAI47_04575at 962.795 kb on + strand, within IAI47_04575at 962.795 kb on + strand, within IAI47_04575at 962.796 kb on - strand, within IAI47_04575at 962.796 kb on - strand, within IAI47_04575at 962.796 kb on - strand, within IAI47_04575at 962.796 kb on - strand, within IAI47_04575at 962.796 kb on - strand, within IAI47_04575at 962.917 kb on - strand, within IAI47_04575at 962.917 kb on - strand, within IAI47_04575at 962.955 kb on + strand, within IAI47_04575at 962.955 kb on + strand, within IAI47_04575at 962.955 kb on + strand, within IAI47_04575at 962.956 kb on - strand, within IAI47_04575at 962.956 kb on - strand, within IAI47_04575at 963.005 kb on + strand, within IAI47_04575at 963.005 kb on + strand, within IAI47_04575at 963.035 kb on + strand, within IAI47_04575at 963.036 kb on - strand, within IAI47_04575at 963.075 kb on + strand, within IAI47_04575at 963.128 kb on - strandat 963.128 kb on - strandat 963.156 kb on + strandat 963.156 kb on + strandat 963.156 kb on + strandat 963.156 kb on + strandat 963.157 kb on - strandat 963.157 kb on - strandat 963.157 kb on - strandat 963.171 kb on + strandat 963.172 kb on - strandat 963.207 kb on + strandat 963.207 kb on + strandat 963.207 kb on + strandat 963.208 kb on - strandat 963.209 kb on + strandat 963.209 kb on + strandat 963.209 kb on + strandat 963.210 kb on - strandat 963.210 kb on - strandat 963.224 kb on - strandat 963.224 kb on - strandat 963.228 kb on + strandat 963.228 kb on + strandat 963.228 kb on + strandat 963.228 kb on + strandat 963.229 kb on - strandat 963.240 kb on + strandat 963.241 kb on - strandat 963.246 kb on - strandat 963.308 kb on + strandat 963.309 kb on - strandat 963.309 kb on - strandat 963.319 kb on - strandat 963.319 kb on - strandat 963.319 kb on - strandat 963.450 kb on + strandat 963.450 kb on + strandat 963.450 kb on + strandat 963.451 kb on - strandat 963.451 kb on - strandat 963.451 kb on - strandat 963.451 kb on - strandat 963.451 kb on - strandat 963.459 kb on + strand, within IAI47_04580at 963.552 kb on + strand, within IAI47_04580at 963.552 kb on + strand, within IAI47_04580at 963.553 kb on - strand, within IAI47_04580at 963.553 kb on - strand, within IAI47_04580at 963.553 kb on - strand, within IAI47_04580

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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961,177 + -1.4
961,177 + -1.0
961,178 - -0.1
961,299 + IAI47_04565 0.16 +0.3
961,299 + IAI47_04565 0.16 -1.0
961,299 + IAI47_04565 0.16 -1.0
961,299 + IAI47_04565 0.16 -0.0
961,300 - IAI47_04565 0.16 -0.4
961,300 - IAI47_04565 0.16 +0.3
961,300 - IAI47_04565 0.16 -1.5
961,311 + IAI47_04565 0.17 +1.7
961,311 + IAI47_04565 0.17 -1.5
961,312 - IAI47_04565 0.17 +0.9
961,312 - IAI47_04565 0.17 +1.8
961,312 - IAI47_04565 0.17 -1.4
961,317 + IAI47_04565 0.18 +0.6
961,356 + IAI47_04565 0.22 +0.1
961,356 + IAI47_04565 0.22 +1.5
961,461 + IAI47_04565 0.33 +4.1
961,462 - IAI47_04565 0.33 +1.6
961,518 + IAI47_04565 0.39 +1.1
961,518 + IAI47_04565 0.39 -1.0
961,518 + IAI47_04565 0.39 -1.5
961,519 - IAI47_04565 0.40 +0.4
961,519 - IAI47_04565 0.40 +0.1
961,519 - IAI47_04565 0.40 -1.5
961,549 - IAI47_04565 0.43 -0.4
961,549 - IAI47_04565 0.43 +3.4
961,560 + IAI47_04565 0.44 +0.1
961,560 + IAI47_04565 0.44 +1.6
961,560 + IAI47_04565 0.44 -1.5
961,560 + IAI47_04565 0.44 +4.9
961,561 - IAI47_04565 0.44 +1.6
961,561 - IAI47_04565 0.44 +0.1
961,561 - IAI47_04565 0.44 -0.8
961,561 - IAI47_04565 0.44 +0.3
961,561 - IAI47_04565 0.44 +0.3
961,730 + IAI47_04565 0.62 +3.7
961,730 + IAI47_04565 0.62 -1.9
961,751 + IAI47_04565 0.64 -0.2
961,751 + IAI47_04565 0.64 -0.9
961,751 + IAI47_04565 0.64 +0.6
961,752 - IAI47_04565 0.64 -1.8
961,923 + IAI47_04565 0.83 -0.0
961,923 + IAI47_04565 0.83 +1.4
961,923 + IAI47_04565 0.83 +2.3
961,923 + IAI47_04565 0.83 +2.0
961,923 + IAI47_04565 0.83 -0.1
961,923 + IAI47_04565 0.83 -0.2
961,923 + IAI47_04565 0.83 -0.2
961,923 + IAI47_04565 0.83 +1.8
961,923 + IAI47_04565 0.83 +0.1
961,924 - IAI47_04565 0.83 +0.7
961,924 - IAI47_04565 0.83 +1.4
962,082 + -0.5
962,082 + +1.3
962,083 - +2.6
962,083 - +0.4
962,083 - -1.9
962,083 - -2.9
962,083 - +0.9
962,106 + +2.2
962,106 + -1.1
962,106 + +2.4
962,107 - -0.6
962,135 - +0.3
962,135 - +1.3
962,212 - IAI47_04570 0.10 -0.3
962,212 - IAI47_04570 0.10 +0.3
962,308 + IAI47_04570 0.33 +2.2
962,368 + IAI47_04570 0.47 -0.2
962,369 - IAI47_04570 0.47 -0.9
962,369 - IAI47_04570 0.47 +0.4
962,386 + IAI47_04570 0.51 -0.8
962,387 - IAI47_04570 0.52 -2.5
962,387 - IAI47_04570 0.52 -0.8
962,413 + IAI47_04570 0.58 +2.8
962,414 - IAI47_04570 0.58 -0.4
962,424 + IAI47_04570 0.60 -1.4
962,433 + IAI47_04570 0.63 +0.4
962,434 - IAI47_04570 0.63 +0.8
962,458 + IAI47_04570 0.69 +0.3
962,459 - IAI47_04570 0.69 +2.0
962,472 + IAI47_04570 0.72 -0.8
962,472 + IAI47_04570 0.72 +0.5
962,480 + IAI47_04570 0.74 +0.9
962,480 + IAI47_04570 0.74 -0.9
962,480 + IAI47_04570 0.74 +1.0
962,481 - IAI47_04570 0.74 +1.5
962,481 - IAI47_04570 0.74 -0.1
962,519 - IAI47_04570 0.83 +0.6
962,530 + IAI47_04570 0.86 -0.5
962,530 + IAI47_04570 0.86 -1.5
962,530 + IAI47_04570 0.86 +2.8
962,531 - IAI47_04570 0.86 +0.7
962,531 - IAI47_04570 0.86 +3.7
962,531 - IAI47_04570 0.86 +2.0
962,531 - IAI47_04570 0.86 +1.0
962,531 - IAI47_04570 0.86 +4.1
962,629 - +2.5
962,629 - +1.3
962,642 + +2.3
962,642 + +0.5
962,642 + -0.7
962,642 + -0.5
962,642 + +0.1
962,643 - -0.3
962,643 - -0.9
962,643 - +1.6
962,643 - -0.3
962,643 - +0.3
962,681 + IAI47_04575 0.17 +1.0
962,682 - IAI47_04575 0.17 +1.1
962,692 - IAI47_04575 0.19 +0.0
962,709 + IAI47_04575 0.22 +0.6
962,709 + IAI47_04575 0.22 +1.2
962,709 + IAI47_04575 0.22 -1.3
962,710 - IAI47_04575 0.22 +0.1
962,744 + IAI47_04575 0.28 -2.3
962,744 + IAI47_04575 0.28 +1.5
962,744 + IAI47_04575 0.28 +1.5
962,744 + IAI47_04575 0.28 +4.4
962,744 + IAI47_04575 0.28 +0.3
962,744 + IAI47_04575 0.28 +1.3
962,744 + IAI47_04575 0.28 -1.1
962,744 + IAI47_04575 0.28 -0.1
962,744 + IAI47_04575 0.28 +2.9
962,744 + IAI47_04575 0.28 +1.0
962,744 + IAI47_04575 0.28 -0.5
962,744 + IAI47_04575 0.28 -1.9
962,744 + IAI47_04575 0.28 +1.0
962,744 + IAI47_04575 0.28 +0.8
962,744 + IAI47_04575 0.28 -0.7
962,744 + IAI47_04575 0.28 +0.3
962,745 - IAI47_04575 0.28 +1.8
962,745 - IAI47_04575 0.28 -0.2
962,745 - IAI47_04575 0.28 -1.3
962,745 - IAI47_04575 0.28 +0.6
962,745 - IAI47_04575 0.28 +0.4
962,745 - IAI47_04575 0.28 -2.1
962,745 - IAI47_04575 0.28 +3.8
962,745 - IAI47_04575 0.28 -0.5
962,745 - IAI47_04575 0.28 +3.5
962,745 - IAI47_04575 0.28 -0.4
962,745 - IAI47_04575 0.28 -1.4
962,745 - IAI47_04575 0.28 +2.0
962,745 - IAI47_04575 0.28 +1.1
962,745 - IAI47_04575 0.28 -0.8
962,745 - IAI47_04575 0.28 +0.0
962,748 + IAI47_04575 0.29 +0.7
962,748 + IAI47_04575 0.29 +0.4
962,748 + IAI47_04575 0.29 -0.2
962,748 + IAI47_04575 0.29 -0.6
962,748 + IAI47_04575 0.29 +1.5
962,748 + IAI47_04575 0.29 +0.8
962,748 + IAI47_04575 0.29 +0.3
962,748 + IAI47_04575 0.29 -0.1
962,748 + IAI47_04575 0.29 +0.1
962,748 + IAI47_04575 0.29 +1.2
962,748 + IAI47_04575 0.29 +0.2
962,748 + IAI47_04575 0.29 +2.7
962,749 - IAI47_04575 0.29 +2.3
962,749 - IAI47_04575 0.29 -0.9
962,749 - IAI47_04575 0.29 +0.4
962,749 - IAI47_04575 0.29 -1.0
962,749 - IAI47_04575 0.29 -0.2
962,749 - IAI47_04575 0.29 +1.3
962,749 - IAI47_04575 0.29 -0.3
962,749 - IAI47_04575 0.29 -0.3
962,749 - IAI47_04575 0.29 -0.1
962,749 - IAI47_04575 0.29 -2.2
962,749 - IAI47_04575 0.29 +0.3
962,786 + IAI47_04575 0.36 +0.5
962,786 + IAI47_04575 0.36 +0.5
962,787 - IAI47_04575 0.36 +1.2
962,787 - IAI47_04575 0.36 -1.3
962,787 - IAI47_04575 0.36 +1.4
962,787 - IAI47_04575 0.36 +0.3
962,787 - IAI47_04575 0.36 -0.5
962,793 + IAI47_04575 0.37 +0.1
962,793 + IAI47_04575 0.37 +4.4
962,793 + IAI47_04575 0.37 +0.4
962,793 + IAI47_04575 0.37 +5.6
962,793 + IAI47_04575 0.37 +0.0
962,794 - IAI47_04575 0.37 +0.1
962,794 - IAI47_04575 0.37 -0.0
962,794 - IAI47_04575 0.37 -0.2
962,795 + IAI47_04575 0.38 -1.7
962,795 + IAI47_04575 0.38 -0.1
962,795 + IAI47_04575 0.38 -0.7
962,795 + IAI47_04575 0.38 +0.7
962,795 + IAI47_04575 0.38 +0.8
962,796 - IAI47_04575 0.38 +2.0
962,796 - IAI47_04575 0.38 -1.2
962,796 - IAI47_04575 0.38 +0.8
962,796 - IAI47_04575 0.38 +0.8
962,796 - IAI47_04575 0.38 +0.1
962,917 - IAI47_04575 0.60 -0.8
962,917 - IAI47_04575 0.60 -0.3
962,955 + IAI47_04575 0.67 +0.8
962,955 + IAI47_04575 0.67 +0.4
962,955 + IAI47_04575 0.67 -0.1
962,956 - IAI47_04575 0.67 -0.2
962,956 - IAI47_04575 0.67 +0.3
963,005 + IAI47_04575 0.76 +1.3
963,005 + IAI47_04575 0.76 +1.4
963,035 + IAI47_04575 0.82 -0.7
963,036 - IAI47_04575 0.82 +1.3
963,075 + IAI47_04575 0.89 -0.7
963,128 - +0.4
963,128 - -1.1
963,156 + -1.2
963,156 + -1.9
963,156 + -2.1
963,156 + +1.0
963,157 - -1.9
963,157 - +1.8
963,157 - -0.2
963,171 + +0.6
963,172 - +1.3
963,207 + +0.5
963,207 + -0.6
963,207 + -0.1
963,208 - +0.4
963,209 + -1.3
963,209 + +1.1
963,209 + +0.5
963,210 - +0.5
963,210 - +0.5
963,224 - -0.4
963,224 - +0.5
963,228 + -1.0
963,228 + -0.3
963,228 + +0.4
963,228 + -1.2
963,229 - +0.8
963,240 + -0.7
963,241 - +0.8
963,246 - -1.8
963,308 + +0.2
963,309 - +0.0
963,309 - -2.2
963,319 - -1.2
963,319 - -0.3
963,319 - -0.5
963,450 + +0.4
963,450 + -1.0
963,450 + -0.3
963,451 - -0.3
963,451 - +0.1
963,451 - +3.6
963,451 - -0.2
963,451 - -0.6
963,459 + IAI47_04580 0.10 +1.0
963,552 + IAI47_04580 0.24 -1.0
963,552 + IAI47_04580 0.24 +0.9
963,553 - IAI47_04580 0.24 -0.6
963,553 - IAI47_04580 0.24 -1.2
963,553 - IAI47_04580 0.24 -0.4

Or see this region's nucleotide sequence