Strain Fitness in Pantoea sp. MT58 around IAI47_03600

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03590 and IAI47_03595 are separated by 12 nucleotidesIAI47_03595 and IAI47_03600 are separated by 14 nucleotidesIAI47_03600 and IAI47_03605 overlap by 7 nucleotidesIAI47_03605 and IAI47_03610 overlap by 1 nucleotides IAI47_03590: IAI47_03590 - YggT family protein, at 749,023 to 749,577 _03590 IAI47_03595: IAI47_03595 - YggS family pyridoxal phosphate-dependent enzyme, at 749,590 to 750,297 _03595 IAI47_03600: IAI47_03600 - type IV pilus twitching motility protein PilT, at 750,312 to 751,319 _03600 IAI47_03605: IAI47_03605 - Holliday junction resolvase RuvX, at 751,313 to 751,732 _03605 IAI47_03610: IAI47_03610 - YqgE/AlgH family protein, at 751,732 to 752,295 _03610 Position (kb) 750 751 752Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 749.332 kb on + strand, within IAI47_03590at 749.332 kb on + strand, within IAI47_03590at 749.332 kb on + strand, within IAI47_03590at 749.333 kb on - strand, within IAI47_03590at 749.338 kb on + strand, within IAI47_03590at 749.339 kb on - strand, within IAI47_03590at 749.339 kb on - strand, within IAI47_03590at 749.391 kb on + strand, within IAI47_03590at 749.391 kb on + strand, within IAI47_03590at 749.391 kb on + strandat 749.392 kb on - strand, within IAI47_03590at 749.416 kb on + strand, within IAI47_03590at 749.417 kb on - strand, within IAI47_03590at 749.417 kb on - strand, within IAI47_03590at 749.480 kb on + strand, within IAI47_03590at 749.515 kb on + strand, within IAI47_03590at 749.515 kb on + strand, within IAI47_03590at 749.516 kb on - strand, within IAI47_03590at 749.516 kb on - strand, within IAI47_03590at 749.534 kb on + strandat 749.534 kb on + strandat 749.554 kb on + strandat 749.572 kb on + strandat 749.572 kb on + strandat 749.589 kb on - strandat 749.589 kb on - strandat 749.589 kb on - strandat 749.591 kb on + strandat 749.591 kb on + strandat 749.591 kb on + strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.612 kb on + strandat 749.613 kb on - strandat 749.643 kb on + strandat 749.644 kb on - strandat 749.656 kb on - strandat 749.709 kb on + strand, within IAI47_03595at 749.710 kb on - strand, within IAI47_03595at 749.710 kb on - strand, within IAI47_03595at 749.723 kb on + strand, within IAI47_03595at 749.723 kb on + strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.786 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.918 kb on - strand, within IAI47_03595at 749.918 kb on - strand, within IAI47_03595at 749.927 kb on - strand, within IAI47_03595at 749.927 kb on - strand, within IAI47_03595at 749.982 kb on + strand, within IAI47_03595at 749.983 kb on - strand, within IAI47_03595at 750.126 kb on - strand, within IAI47_03595at 750.193 kb on - strand, within IAI47_03595at 750.210 kb on + strand, within IAI47_03595at 750.274 kb on + strandat 750.274 kb on + strandat 750.275 kb on - strandat 750.275 kb on - strandat 750.275 kb on - strandat 750.297 kb on + strandat 750.297 kb on + strandat 750.297 kb on + strandat 750.297 kb on + strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.312 kb on - strandat 750.338 kb on + strandat 750.338 kb on + strandat 750.338 kb on + strandat 750.339 kb on - strandat 750.339 kb on - strandat 750.343 kb on + strandat 750.343 kb on + strandat 750.344 kb on - strandat 750.344 kb on - strandat 750.344 kb on - strandat 750.344 kb on - strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.351 kb on - strandat 750.351 kb on - strandat 750.351 kb on - strandat 750.351 kb on - strandat 750.351 kb on - strandat 750.465 kb on - strand, within IAI47_03600at 750.572 kb on + strand, within IAI47_03600at 750.573 kb on - strand, within IAI47_03600at 750.581 kb on + strand, within IAI47_03600at 750.608 kb on + strand, within IAI47_03600at 750.608 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.654 kb on - strand, within IAI47_03600at 750.654 kb on - strand, within IAI47_03600at 750.654 kb on - strand, within IAI47_03600at 750.667 kb on + strand, within IAI47_03600at 750.725 kb on + strand, within IAI47_03600at 750.776 kb on + strand, within IAI47_03600at 750.777 kb on - strand, within IAI47_03600at 750.777 kb on - strand, within IAI47_03600at 750.782 kb on + strand, within IAI47_03600at 750.782 kb on + strand, within IAI47_03600at 750.783 kb on - strand, within IAI47_03600at 750.783 kb on - strand, within IAI47_03600at 750.881 kb on - strand, within IAI47_03600at 750.881 kb on - strand, within IAI47_03600at 750.958 kb on + strand, within IAI47_03600at 751.024 kb on + strand, within IAI47_03600at 751.025 kb on - strand, within IAI47_03600at 751.159 kb on + strand, within IAI47_03600at 751.159 kb on + strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.228 kb on + strandat 751.229 kb on - strandat 751.301 kb on + strandat 751.317 kb on + strandat 751.318 kb on - strandat 751.713 kb on - strandat 751.713 kb on - strandat 751.768 kb on - strandat 751.780 kb on - strandat 751.780 kb on - strandat 751.780 kb on - strandat 751.840 kb on - strand, within IAI47_03610at 751.908 kb on - strand, within IAI47_03610at 751.908 kb on - strand, within IAI47_03610at 752.017 kb on - strand, within IAI47_03610at 752.017 kb on - strand, within IAI47_03610at 752.044 kb on - strand, within IAI47_03610at 752.176 kb on - strand, within IAI47_03610at 752.179 kb on - strand, within IAI47_03610at 752.208 kb on + strand, within IAI47_03610at 752.209 kb on - strand, within IAI47_03610at 752.209 kb on - strand, within IAI47_03610at 752.209 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.288 kb on - strandat 752.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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749,332 + IAI47_03590 0.56 -1.0
749,332 + IAI47_03590 0.56 -0.1
749,332 + IAI47_03590 0.56 +0.3
749,333 - IAI47_03590 0.56 -1.2
749,338 + IAI47_03590 0.57 -0.7
749,339 - IAI47_03590 0.57 +0.0
749,339 - IAI47_03590 0.57 -0.5
749,391 + IAI47_03590 0.66 -0.8
749,391 + IAI47_03590 0.66 -0.2
749,391 + +2.7
749,392 - IAI47_03590 0.66 -1.6
749,416 + IAI47_03590 0.71 -0.1
749,417 - IAI47_03590 0.71 +0.2
749,417 - IAI47_03590 0.71 -1.0
749,480 + IAI47_03590 0.82 -0.8
749,515 + IAI47_03590 0.89 -1.6
749,515 + IAI47_03590 0.89 +0.3
749,516 - IAI47_03590 0.89 -1.0
749,516 - IAI47_03590 0.89 -1.3
749,534 + +0.2
749,534 + -0.8
749,554 + -0.1
749,572 + +1.5
749,572 + -1.2
749,589 - +0.4
749,589 - +0.9
749,589 - +0.2
749,591 + +1.3
749,591 + -0.7
749,591 + -0.8
749,592 - +0.3
749,592 - +0.5
749,592 - -0.6
749,592 - +0.2
749,592 - +0.7
749,592 - -1.9
749,612 + -1.1
749,613 - -0.5
749,643 + +1.1
749,644 - +0.8
749,656 - +1.7
749,709 + IAI47_03595 0.17 +3.1
749,710 - IAI47_03595 0.17 +0.9
749,710 - IAI47_03595 0.17 -2.0
749,723 + IAI47_03595 0.19 +0.1
749,723 + IAI47_03595 0.19 +0.2
749,724 - IAI47_03595 0.19 +5.9
749,724 - IAI47_03595 0.19 +1.5
749,724 - IAI47_03595 0.19 -0.7
749,724 - IAI47_03595 0.19 -0.5
749,786 + IAI47_03595 0.28 -0.9
749,913 + IAI47_03595 0.46 +0.4
749,913 + IAI47_03595 0.46 -0.5
749,913 + IAI47_03595 0.46 -1.4
749,913 + IAI47_03595 0.46 +1.7
749,913 + IAI47_03595 0.46 +0.5
749,913 + IAI47_03595 0.46 -0.2
749,914 - IAI47_03595 0.46 +0.5
749,914 - IAI47_03595 0.46 -0.2
749,914 - IAI47_03595 0.46 +0.9
749,918 - IAI47_03595 0.46 +1.2
749,918 - IAI47_03595 0.46 -0.9
749,927 - IAI47_03595 0.48 -1.0
749,927 - IAI47_03595 0.48 -0.6
749,982 + IAI47_03595 0.55 +0.5
749,983 - IAI47_03595 0.56 +1.0
750,126 - IAI47_03595 0.76 -0.1
750,193 - IAI47_03595 0.85 +0.1
750,210 + IAI47_03595 0.88 -1.8
750,274 + +0.8
750,274 + -0.2
750,275 - +1.3
750,275 - -2.0
750,275 - -0.5
750,297 + +0.1
750,297 + +0.7
750,297 + +0.3
750,297 + -0.9
750,298 - -1.8
750,298 - +0.2
750,298 - +0.2
750,298 - +0.1
750,298 - +0.3
750,298 - +0.8
750,312 - -0.2
750,338 + -0.3
750,338 + +0.5
750,338 + +0.5
750,339 - +0.5
750,339 - +3.1
750,343 + +0.0
750,343 + +2.6
750,344 - +0.0
750,344 - +1.0
750,344 - -1.7
750,344 - -1.1
750,350 + +1.0
750,350 + +1.1
750,350 + +0.3
750,350 + +0.1
750,350 + +0.3
750,350 + -0.5
750,351 - +0.8
750,351 - -0.6
750,351 - +0.6
750,351 - -1.5
750,351 - +0.5
750,465 - IAI47_03600 0.15 +2.3
750,572 + IAI47_03600 0.26 -0.6
750,573 - IAI47_03600 0.26 +0.6
750,581 + IAI47_03600 0.27 +1.2
750,608 + IAI47_03600 0.29 +0.6
750,608 + IAI47_03600 0.29 -1.2
750,653 + IAI47_03600 0.34 -0.5
750,653 + IAI47_03600 0.34 +0.7
750,653 + IAI47_03600 0.34 -0.2
750,653 + IAI47_03600 0.34 +0.1
750,653 + IAI47_03600 0.34 +1.5
750,654 - IAI47_03600 0.34 +2.3
750,654 - IAI47_03600 0.34 +1.2
750,654 - IAI47_03600 0.34 +0.4
750,667 + IAI47_03600 0.35 +3.4
750,725 + IAI47_03600 0.41 +0.3
750,776 + IAI47_03600 0.46 -0.4
750,777 - IAI47_03600 0.46 +0.2
750,777 - IAI47_03600 0.46 +0.2
750,782 + IAI47_03600 0.47 +0.2
750,782 + IAI47_03600 0.47 +2.6
750,783 - IAI47_03600 0.47 +0.3
750,783 - IAI47_03600 0.47 +0.7
750,881 - IAI47_03600 0.56 +0.2
750,881 - IAI47_03600 0.56 +1.5
750,958 + IAI47_03600 0.64 -1.2
751,024 + IAI47_03600 0.71 +1.9
751,025 - IAI47_03600 0.71 -0.9
751,159 + IAI47_03600 0.84 +0.5
751,159 + IAI47_03600 0.84 -0.4
751,160 - IAI47_03600 0.84 -1.1
751,160 - IAI47_03600 0.84 +4.4
751,160 - IAI47_03600 0.84 +0.5
751,160 - IAI47_03600 0.84 +4.3
751,228 + -0.2
751,229 - +0.5
751,301 + -0.4
751,317 + -0.6
751,318 - +0.4
751,713 - +2.1
751,713 - +0.9
751,768 - -1.9
751,780 - -0.3
751,780 - +2.2
751,780 - -0.6
751,840 - IAI47_03610 0.19 +5.1
751,908 - IAI47_03610 0.31 -1.4
751,908 - IAI47_03610 0.31 +0.2
752,017 - IAI47_03610 0.51 -0.2
752,017 - IAI47_03610 0.51 -1.0
752,044 - IAI47_03610 0.55 +8.2
752,176 - IAI47_03610 0.79 -0.7
752,179 - IAI47_03610 0.79 -2.0
752,208 + IAI47_03610 0.84 +0.9
752,209 - IAI47_03610 0.85 -0.8
752,209 - IAI47_03610 0.85 +1.0
752,209 - IAI47_03610 0.85 -2.2
752,223 - IAI47_03610 0.87 +0.4
752,223 - IAI47_03610 0.87 +3.1
752,223 - IAI47_03610 0.87 +1.7
752,223 - IAI47_03610 0.87 -0.0
752,223 - IAI47_03610 0.87 +0.2
752,288 - +0.1
752,288 - -0.5

Or see this region's nucleotide sequence