Strain Fitness in Pantoea sp. MT58 around IAI47_03555

Experiment: copper (II) chloride 2 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03550 and IAI47_03555 are separated by 54 nucleotidesIAI47_03555 and IAI47_03560 overlap by 1 nucleotides IAI47_03550: IAI47_03550 - membrane-bound lytic murein transglycosylase MltC, at 742,753 to 743,832 _03550 IAI47_03555: IAI47_03555 - oxidative damage protection protein, at 743,887 to 744,159 _03555 IAI47_03560: IAI47_03560 - A/G-specific adenine glycosylase, at 744,159 to 745,244 _03560 Position (kb) 743 744 745Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 742.937 kb on + strand, within IAI47_03550at 742.991 kb on + strand, within IAI47_03550at 743.015 kb on + strand, within IAI47_03550at 743.015 kb on + strand, within IAI47_03550at 743.016 kb on - strand, within IAI47_03550at 743.016 kb on - strand, within IAI47_03550at 743.057 kb on + strand, within IAI47_03550at 743.082 kb on + strand, within IAI47_03550at 743.083 kb on - strand, within IAI47_03550at 743.083 kb on - strand, within IAI47_03550at 743.083 kb on - strand, within IAI47_03550at 743.083 kb on - strand, within IAI47_03550at 743.194 kb on - strand, within IAI47_03550at 743.225 kb on + strand, within IAI47_03550at 743.226 kb on - strand, within IAI47_03550at 743.226 kb on - strand, within IAI47_03550at 743.226 kb on - strand, within IAI47_03550at 743.226 kb on - strand, within IAI47_03550at 743.242 kb on - strand, within IAI47_03550at 743.259 kb on - strand, within IAI47_03550at 743.313 kb on - strand, within IAI47_03550at 743.313 kb on - strand, within IAI47_03550at 743.349 kb on + strand, within IAI47_03550at 743.349 kb on + strand, within IAI47_03550at 743.350 kb on - strand, within IAI47_03550at 743.350 kb on - strand, within IAI47_03550at 743.350 kb on - strand, within IAI47_03550at 743.350 kb on - strand, within IAI47_03550at 743.350 kb on - strand, within IAI47_03550at 743.363 kb on + strand, within IAI47_03550at 743.363 kb on + strand, within IAI47_03550at 743.363 kb on + strand, within IAI47_03550at 743.363 kb on + strand, within IAI47_03550at 743.363 kb on + strand, within IAI47_03550at 743.363 kb on + strand, within IAI47_03550at 743.364 kb on - strand, within IAI47_03550at 743.432 kb on + strand, within IAI47_03550at 743.432 kb on + strand, within IAI47_03550at 743.433 kb on - strand, within IAI47_03550at 743.433 kb on - strand, within IAI47_03550at 743.433 kb on - strand, within IAI47_03550at 743.448 kb on + strand, within IAI47_03550at 743.477 kb on + strand, within IAI47_03550at 743.477 kb on + strand, within IAI47_03550at 743.478 kb on - strand, within IAI47_03550at 743.584 kb on - strand, within IAI47_03550at 743.584 kb on - strand, within IAI47_03550at 743.615 kb on + strand, within IAI47_03550at 743.615 kb on + strand, within IAI47_03550at 743.616 kb on - strand, within IAI47_03550at 743.616 kb on - strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.618 kb on + strand, within IAI47_03550at 743.619 kb on - strand, within IAI47_03550at 743.619 kb on - strand, within IAI47_03550at 743.619 kb on - strand, within IAI47_03550at 743.630 kb on + strand, within IAI47_03550at 743.630 kb on + strand, within IAI47_03550at 743.639 kb on + strand, within IAI47_03550at 743.683 kb on - strand, within IAI47_03550at 743.692 kb on - strand, within IAI47_03550at 743.692 kb on - strand, within IAI47_03550at 743.694 kb on + strand, within IAI47_03550at 743.694 kb on + strand, within IAI47_03550at 743.694 kb on + strand, within IAI47_03550at 743.695 kb on - strand, within IAI47_03550at 743.695 kb on - strand, within IAI47_03550at 743.695 kb on - strand, within IAI47_03550at 743.695 kb on - strand, within IAI47_03550at 743.740 kb on + strandat 743.800 kb on + strandat 743.800 kb on + strandat 743.801 kb on - strandat 743.801 kb on - strandat 743.801 kb on - strandat 743.801 kb on - strandat 743.889 kb on - strandat 743.889 kb on - strandat 743.904 kb on + strandat 743.904 kb on + strandat 743.904 kb on + strandat 743.904 kb on + strandat 743.904 kb on + strandat 743.904 kb on + strandat 743.904 kb on + strandat 743.904 kb on + strandat 743.904 kb on + strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.905 kb on - strandat 743.906 kb on + strandat 743.907 kb on - strandat 743.907 kb on - strandat 743.907 kb on - strandat 743.916 kb on + strand, within IAI47_03555at 743.916 kb on + strand, within IAI47_03555at 743.917 kb on - strand, within IAI47_03555at 743.917 kb on - strand, within IAI47_03555at 743.917 kb on - strand, within IAI47_03555at 743.928 kb on + strand, within IAI47_03555at 743.928 kb on + strand, within IAI47_03555at 743.928 kb on + strand, within IAI47_03555at 743.928 kb on + strand, within IAI47_03555at 743.928 kb on + strand, within IAI47_03555at 743.929 kb on - strand, within IAI47_03555at 743.929 kb on - strand, within IAI47_03555at 743.929 kb on - strand, within IAI47_03555at 743.929 kb on - strand, within IAI47_03555at 743.970 kb on + strand, within IAI47_03555at 743.970 kb on + strand, within IAI47_03555at 743.970 kb on + strand, within IAI47_03555at 743.970 kb on + strand, within IAI47_03555at 743.971 kb on - strand, within IAI47_03555at 743.971 kb on - strand, within IAI47_03555at 743.971 kb on - strand, within IAI47_03555at 744.059 kb on - strand, within IAI47_03555at 744.068 kb on + strand, within IAI47_03555at 744.068 kb on + strand, within IAI47_03555at 744.068 kb on + strand, within IAI47_03555at 744.068 kb on + strand, within IAI47_03555at 744.069 kb on - strand, within IAI47_03555at 744.069 kb on - strand, within IAI47_03555at 744.069 kb on - strand, within IAI47_03555at 744.072 kb on + strand, within IAI47_03555at 744.072 kb on + strand, within IAI47_03555at 744.073 kb on - strand, within IAI47_03555at 744.073 kb on - strand, within IAI47_03555at 744.073 kb on - strand, within IAI47_03555at 744.078 kb on + strand, within IAI47_03555at 744.160 kb on + strandat 744.160 kb on + strandat 744.160 kb on + strandat 744.160 kb on + strandat 744.161 kb on - strandat 744.173 kb on + strandat 744.174 kb on - strandat 744.222 kb on + strandat 744.222 kb on + strandat 744.223 kb on - strandat 744.223 kb on - strandat 744.247 kb on - strandat 744.247 kb on - strandat 744.270 kb on + strand, within IAI47_03560at 744.271 kb on - strand, within IAI47_03560at 744.276 kb on - strand, within IAI47_03560at 744.276 kb on - strand, within IAI47_03560at 744.277 kb on + strand, within IAI47_03560at 744.278 kb on - strand, within IAI47_03560at 744.278 kb on - strand, within IAI47_03560at 744.278 kb on - strand, within IAI47_03560at 744.363 kb on + strand, within IAI47_03560at 744.569 kb on + strand, within IAI47_03560at 744.569 kb on + strand, within IAI47_03560at 744.570 kb on - strand, within IAI47_03560at 744.570 kb on - strand, within IAI47_03560at 744.586 kb on + strand, within IAI47_03560at 744.610 kb on + strand, within IAI47_03560at 744.611 kb on - strand, within IAI47_03560at 744.611 kb on - strand, within IAI47_03560at 744.629 kb on + strand, within IAI47_03560at 744.630 kb on - strand, within IAI47_03560at 744.630 kb on - strand, within IAI47_03560at 744.630 kb on - strand, within IAI47_03560at 744.630 kb on - strand, within IAI47_03560at 744.701 kb on + strand, within IAI47_03560at 744.702 kb on - strand, within IAI47_03560at 744.797 kb on - strand, within IAI47_03560at 744.923 kb on + strand, within IAI47_03560at 744.924 kb on - strand, within IAI47_03560at 744.972 kb on - strand, within IAI47_03560at 744.972 kb on - strand, within IAI47_03560at 744.972 kb on - strand, within IAI47_03560at 744.972 kb on - strand, within IAI47_03560at 744.981 kb on - strand, within IAI47_03560at 744.981 kb on - strand, within IAI47_03560at 744.994 kb on + strand, within IAI47_03560at 744.994 kb on + strand, within IAI47_03560at 744.995 kb on - strand, within IAI47_03560at 744.995 kb on - strand, within IAI47_03560at 744.995 kb on - strand, within IAI47_03560at 744.995 kb on - strand, within IAI47_03560at 744.997 kb on - strand, within IAI47_03560at 744.998 kb on - strand, within IAI47_03560at 745.076 kb on + strand, within IAI47_03560at 745.077 kb on - strand, within IAI47_03560at 745.077 kb on - strand, within IAI47_03560at 745.090 kb on + strand, within IAI47_03560at 745.090 kb on + strand, within IAI47_03560at 745.098 kb on + strand, within IAI47_03560at 745.098 kb on + strand, within IAI47_03560at 745.122 kb on + strand, within IAI47_03560at 745.122 kb on + strand, within IAI47_03560at 745.122 kb on + strand, within IAI47_03560at 745.122 kb on + strand, within IAI47_03560at 745.123 kb on - strand, within IAI47_03560at 745.123 kb on - strand, within IAI47_03560at 745.148 kb on + strandat 745.148 kb on + strandat 745.148 kb on + strandat 745.148 kb on + strandat 745.148 kb on + strandat 745.148 kb on + strandat 745.148 kb on + strandat 745.148 kb on + strandat 745.148 kb on + strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.149 kb on - strandat 745.150 kb on + strandat 745.150 kb on + strandat 745.150 kb on + strandat 745.150 kb on + strandat 745.150 kb on + strandat 745.150 kb on + strandat 745.151 kb on - strandat 745.151 kb on - strandat 745.151 kb on - strandat 745.151 kb on - strandat 745.151 kb on - strandat 745.151 kb on - strandat 745.151 kb on - strandat 745.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
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742,937 + IAI47_03550 0.17 -0.4
742,991 + IAI47_03550 0.22 -0.9
743,015 + IAI47_03550 0.24 +4.9
743,015 + IAI47_03550 0.24 -0.4
743,016 - IAI47_03550 0.24 -2.3
743,016 - IAI47_03550 0.24 -0.5
743,057 + IAI47_03550 0.28 +1.4
743,082 + IAI47_03550 0.30 -0.9
743,083 - IAI47_03550 0.31 -1.8
743,083 - IAI47_03550 0.31 +1.0
743,083 - IAI47_03550 0.31 -0.9
743,083 - IAI47_03550 0.31 -1.6
743,194 - IAI47_03550 0.41 -0.5
743,225 + IAI47_03550 0.44 -2.4
743,226 - IAI47_03550 0.44 -2.4
743,226 - IAI47_03550 0.44 -0.1
743,226 - IAI47_03550 0.44 -0.3
743,226 - IAI47_03550 0.44 -0.0
743,242 - IAI47_03550 0.45 -1.6
743,259 - IAI47_03550 0.47 -1.5
743,313 - IAI47_03550 0.52 -1.7
743,313 - IAI47_03550 0.52 +1.8
743,349 + IAI47_03550 0.55 -0.8
743,349 + IAI47_03550 0.55 -2.3
743,350 - IAI47_03550 0.55 -2.1
743,350 - IAI47_03550 0.55 -0.4
743,350 - IAI47_03550 0.55 +1.0
743,350 - IAI47_03550 0.55 +0.6
743,350 - IAI47_03550 0.55 -2.1
743,363 + IAI47_03550 0.56 +2.1
743,363 + IAI47_03550 0.56 +0.9
743,363 + IAI47_03550 0.56 +1.2
743,363 + IAI47_03550 0.56 +0.1
743,363 + IAI47_03550 0.56 +0.6
743,363 + IAI47_03550 0.56 -2.3
743,364 - IAI47_03550 0.57 -1.8
743,432 + IAI47_03550 0.63 +0.9
743,432 + IAI47_03550 0.63 -0.5
743,433 - IAI47_03550 0.63 -0.6
743,433 - IAI47_03550 0.63 -1.6
743,433 - IAI47_03550 0.63 -0.2
743,448 + IAI47_03550 0.64 -1.0
743,477 + IAI47_03550 0.67 -1.1
743,477 + IAI47_03550 0.67 -0.1
743,478 - IAI47_03550 0.67 -1.5
743,584 - IAI47_03550 0.77 -0.6
743,584 - IAI47_03550 0.77 -0.4
743,615 + IAI47_03550 0.80 +0.5
743,615 + IAI47_03550 0.80 -1.0
743,616 - IAI47_03550 0.80 -1.2
743,616 - IAI47_03550 0.80 +0.1
743,618 + IAI47_03550 0.80 -0.8
743,618 + IAI47_03550 0.80 +4.7
743,618 + IAI47_03550 0.80 -0.4
743,618 + IAI47_03550 0.80 -0.8
743,618 + IAI47_03550 0.80 -1.3
743,618 + IAI47_03550 0.80 +1.5
743,618 + IAI47_03550 0.80 -0.3
743,618 + IAI47_03550 0.80 +0.2
743,618 + IAI47_03550 0.80 -1.8
743,618 + IAI47_03550 0.80 -0.8
743,619 - IAI47_03550 0.80 +1.6
743,619 - IAI47_03550 0.80 -1.2
743,619 - IAI47_03550 0.80 +2.2
743,630 + IAI47_03550 0.81 -2.2
743,630 + IAI47_03550 0.81 +0.2
743,639 + IAI47_03550 0.82 +0.8
743,683 - IAI47_03550 0.86 +0.1
743,692 - IAI47_03550 0.87 -0.5
743,692 - IAI47_03550 0.87 -0.6
743,694 + IAI47_03550 0.87 -1.8
743,694 + IAI47_03550 0.87 +2.5
743,694 + IAI47_03550 0.87 -0.4
743,695 - IAI47_03550 0.87 +2.1
743,695 - IAI47_03550 0.87 -1.2
743,695 - IAI47_03550 0.87 -0.8
743,695 - IAI47_03550 0.87 -2.7
743,740 + -0.5
743,800 + -0.9
743,800 + -0.3
743,801 - +1.0
743,801 - -0.3
743,801 - -1.0
743,801 - -1.1
743,889 - -1.1
743,889 - +0.7
743,904 + -0.8
743,904 + -0.1
743,904 + +0.6
743,904 + +1.1
743,904 + -1.1
743,904 + -1.2
743,904 + -0.9
743,904 + -0.5
743,904 + -1.4
743,905 - -2.0
743,905 - -0.1
743,905 - -1.3
743,905 - -0.5
743,905 - -1.6
743,905 - +1.5
743,905 - +0.3
743,905 - +0.2
743,905 - -1.2
743,905 - +1.9
743,906 + +1.6
743,907 - -1.3
743,907 - +0.1
743,907 - -0.9
743,916 + IAI47_03555 0.11 +4.4
743,916 + IAI47_03555 0.11 -2.2
743,917 - IAI47_03555 0.11 -0.9
743,917 - IAI47_03555 0.11 +2.6
743,917 - IAI47_03555 0.11 +0.3
743,928 + IAI47_03555 0.15 -1.8
743,928 + IAI47_03555 0.15 +0.5
743,928 + IAI47_03555 0.15 -0.9
743,928 + IAI47_03555 0.15 -0.3
743,928 + IAI47_03555 0.15 +0.6
743,929 - IAI47_03555 0.15 +3.6
743,929 - IAI47_03555 0.15 -0.8
743,929 - IAI47_03555 0.15 +0.2
743,929 - IAI47_03555 0.15 +2.0
743,970 + IAI47_03555 0.30 -0.3
743,970 + IAI47_03555 0.30 +2.5
743,970 + IAI47_03555 0.30 -0.2
743,970 + IAI47_03555 0.30 +2.7
743,971 - IAI47_03555 0.31 -1.0
743,971 - IAI47_03555 0.31 -1.2
743,971 - IAI47_03555 0.31 +2.1
744,059 - IAI47_03555 0.63 +1.2
744,068 + IAI47_03555 0.66 +1.1
744,068 + IAI47_03555 0.66 -1.8
744,068 + IAI47_03555 0.66 +0.0
744,068 + IAI47_03555 0.66 +3.2
744,069 - IAI47_03555 0.67 +0.3
744,069 - IAI47_03555 0.67 -1.1
744,069 - IAI47_03555 0.67 -1.2
744,072 + IAI47_03555 0.68 +5.2
744,072 + IAI47_03555 0.68 +2.8
744,073 - IAI47_03555 0.68 +1.1
744,073 - IAI47_03555 0.68 -0.2
744,073 - IAI47_03555 0.68 -1.3
744,078 + IAI47_03555 0.70 +2.4
744,160 + +0.3
744,160 + +0.8
744,160 + -0.1
744,160 + -0.3
744,161 - -1.4
744,173 + +0.0
744,174 - -0.5
744,222 + +0.1
744,222 + +0.1
744,223 - -1.0
744,223 - -0.4
744,247 - -0.6
744,247 - +0.2
744,270 + IAI47_03560 0.10 +0.7
744,271 - IAI47_03560 0.10 +1.0
744,276 - IAI47_03560 0.11 +0.1
744,276 - IAI47_03560 0.11 +0.8
744,277 + IAI47_03560 0.11 -0.3
744,278 - IAI47_03560 0.11 -0.7
744,278 - IAI47_03560 0.11 -0.1
744,278 - IAI47_03560 0.11 +1.1
744,363 + IAI47_03560 0.19 -1.5
744,569 + IAI47_03560 0.38 -0.8
744,569 + IAI47_03560 0.38 +3.5
744,570 - IAI47_03560 0.38 +0.6
744,570 - IAI47_03560 0.38 -0.1
744,586 + IAI47_03560 0.39 -0.3
744,610 + IAI47_03560 0.42 +3.7
744,611 - IAI47_03560 0.42 -1.3
744,611 - IAI47_03560 0.42 -1.8
744,629 + IAI47_03560 0.43 +1.1
744,630 - IAI47_03560 0.43 +1.6
744,630 - IAI47_03560 0.43 +0.1
744,630 - IAI47_03560 0.43 -0.3
744,630 - IAI47_03560 0.43 -0.1
744,701 + IAI47_03560 0.50 +1.2
744,702 - IAI47_03560 0.50 -0.8
744,797 - IAI47_03560 0.59 -2.1
744,923 + IAI47_03560 0.70 +1.6
744,924 - IAI47_03560 0.70 -0.5
744,972 - IAI47_03560 0.75 -1.4
744,972 - IAI47_03560 0.75 +1.3
744,972 - IAI47_03560 0.75 -1.2
744,972 - IAI47_03560 0.75 +1.5
744,981 - IAI47_03560 0.76 +0.0
744,981 - IAI47_03560 0.76 +0.0
744,994 + IAI47_03560 0.77 +0.3
744,994 + IAI47_03560 0.77 -0.5
744,995 - IAI47_03560 0.77 +0.7
744,995 - IAI47_03560 0.77 -0.5
744,995 - IAI47_03560 0.77 +2.0
744,995 - IAI47_03560 0.77 -1.1
744,997 - IAI47_03560 0.77 +0.3
744,998 - IAI47_03560 0.77 -0.7
745,076 + IAI47_03560 0.84 -0.5
745,077 - IAI47_03560 0.85 +0.2
745,077 - IAI47_03560 0.85 +6.0
745,090 + IAI47_03560 0.86 -0.8
745,090 + IAI47_03560 0.86 -0.5
745,098 + IAI47_03560 0.86 -2.0
745,098 + IAI47_03560 0.86 -0.3
745,122 + IAI47_03560 0.89 -0.2
745,122 + IAI47_03560 0.89 +0.8
745,122 + IAI47_03560 0.89 -0.4
745,122 + IAI47_03560 0.89 +0.8
745,123 - IAI47_03560 0.89 +0.1
745,123 - IAI47_03560 0.89 +1.9
745,148 + +0.9
745,148 + -1.5
745,148 + -0.7
745,148 + -2.4
745,148 + -0.4
745,148 + +4.7
745,148 + +0.2
745,148 + -0.3
745,148 + +0.2
745,149 - -0.4
745,149 - +0.5
745,149 - +4.7
745,149 - +2.4
745,149 - +4.1
745,149 - +0.2
745,149 - -0.1
745,149 - -1.5
745,149 - +0.2
745,149 - -0.7
745,149 - +0.5
745,150 + -1.5
745,150 + -1.5
745,150 + -0.4
745,150 + -0.7
745,150 + +0.3
745,150 + +1.1
745,151 - -1.2
745,151 - -0.0
745,151 - +1.8
745,151 - +0.5
745,151 - +0.4
745,151 - +0.6
745,151 - -0.4
745,151 - -0.1

Or see this region's nucleotide sequence