Strain Fitness in Pantoea sp. MT58 around IAI47_00750

Experiment: copper (II) chloride 2 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_00740 and IAI47_00745 are separated by 68 nucleotidesIAI47_00745 and IAI47_00750 overlap by 4 nucleotidesIAI47_00750 and IAI47_00755 are separated by 35 nucleotides IAI47_00740: IAI47_00740 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 158,000 to 159,016 _00740 IAI47_00745: IAI47_00745 - serine O-acetyltransferase, at 159,085 to 159,906 _00745 IAI47_00750: IAI47_00750 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 159,903 to 160,376 _00750 IAI47_00755: IAI47_00755 - envelope stress sensor histidine kinase CpxA, at 160,412 to 161,791 _00755 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 159.028 kb on + strandat 159.037 kb on + strandat 159.037 kb on + strandat 159.037 kb on + strandat 159.037 kb on + strandat 159.101 kb on + strandat 159.101 kb on + strandat 159.849 kb on + strandat 159.849 kb on + strandat 159.849 kb on + strandat 159.849 kb on + strandat 159.850 kb on - strandat 159.904 kb on + strandat 159.904 kb on + strandat 159.904 kb on + strandat 159.904 kb on + strandat 159.904 kb on + strandat 159.905 kb on - strandat 159.905 kb on - strandat 159.905 kb on - strandat 159.905 kb on - strandat 159.928 kb on + strandat 159.952 kb on + strand, within IAI47_00750at 159.953 kb on - strand, within IAI47_00750at 159.953 kb on - strand, within IAI47_00750at 159.953 kb on - strand, within IAI47_00750at 159.966 kb on + strand, within IAI47_00750at 159.966 kb on + strand, within IAI47_00750at 159.966 kb on + strand, within IAI47_00750at 159.987 kb on - strand, within IAI47_00750at 160.090 kb on + strand, within IAI47_00750at 160.091 kb on - strand, within IAI47_00750at 160.105 kb on + strand, within IAI47_00750at 160.189 kb on + strand, within IAI47_00750at 160.189 kb on + strand, within IAI47_00750at 160.190 kb on - strand, within IAI47_00750at 160.190 kb on - strand, within IAI47_00750at 160.190 kb on - strand, within IAI47_00750at 160.190 kb on - strand, within IAI47_00750at 160.226 kb on - strand, within IAI47_00750at 160.245 kb on + strand, within IAI47_00750at 160.246 kb on - strand, within IAI47_00750at 160.246 kb on - strand, within IAI47_00750at 160.246 kb on - strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.334 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.371 kb on - strandat 160.371 kb on - strandat 160.371 kb on - strandat 160.376 kb on + strandat 160.376 kb on + strandat 160.376 kb on + strandat 160.376 kb on + strandat 160.377 kb on - strandat 160.377 kb on - strandat 160.377 kb on - strandat 160.377 kb on - strandat 160.377 kb on - strandat 160.406 kb on - strandat 160.406 kb on - strandat 160.406 kb on - strandat 160.414 kb on - strandat 160.431 kb on + strandat 160.431 kb on + strandat 160.431 kb on + strandat 160.466 kb on + strandat 160.486 kb on + strandat 160.486 kb on + strandat 160.487 kb on - strandat 160.582 kb on - strand, within IAI47_00755at 160.663 kb on + strand, within IAI47_00755at 160.664 kb on - strand, within IAI47_00755at 160.701 kb on + strand, within IAI47_00755at 160.723 kb on + strand, within IAI47_00755at 160.723 kb on + strand, within IAI47_00755at 160.724 kb on - strand, within IAI47_00755at 160.761 kb on + strand, within IAI47_00755at 160.761 kb on + strand, within IAI47_00755at 160.762 kb on - strand, within IAI47_00755at 160.762 kb on - strand, within IAI47_00755at 160.858 kb on + strand, within IAI47_00755at 160.894 kb on + strand, within IAI47_00755at 160.895 kb on - strand, within IAI47_00755at 160.895 kb on - strand, within IAI47_00755at 160.927 kb on + strand, within IAI47_00755at 160.978 kb on + strand, within IAI47_00755at 160.978 kb on + strand, within IAI47_00755at 160.979 kb on - strand, within IAI47_00755at 161.056 kb on + strand, within IAI47_00755at 161.057 kb on - strand, within IAI47_00755at 161.116 kb on + strand, within IAI47_00755at 161.116 kb on + strand, within IAI47_00755at 161.116 kb on + strand, within IAI47_00755at 161.117 kb on - strand, within IAI47_00755at 161.177 kb on + strand, within IAI47_00755at 161.177 kb on + strand, within IAI47_00755at 161.177 kb on + strand, within IAI47_00755at 161.177 kb on + strand, within IAI47_00755at 161.177 kb on + strand, within IAI47_00755at 161.177 kb on + strand, within IAI47_00755at 161.208 kb on + strand, within IAI47_00755at 161.209 kb on - strand, within IAI47_00755at 161.209 kb on - strand, within IAI47_00755at 161.209 kb on - strand, within IAI47_00755at 161.218 kb on + strand, within IAI47_00755at 161.219 kb on - strand, within IAI47_00755at 161.219 kb on - strand, within IAI47_00755at 161.219 kb on - strand, within IAI47_00755at 161.219 kb on - strand, within IAI47_00755at 161.219 kb on - strand, within IAI47_00755at 161.287 kb on + strand, within IAI47_00755at 161.341 kb on + strand, within IAI47_00755at 161.341 kb on + strand, within IAI47_00755at 161.341 kb on + strand, within IAI47_00755at 161.341 kb on + strand, within IAI47_00755at 161.342 kb on - strand, within IAI47_00755at 161.342 kb on - strand, within IAI47_00755at 161.342 kb on - strand, within IAI47_00755at 161.342 kb on - strand, within IAI47_00755at 161.361 kb on + strand, within IAI47_00755at 161.361 kb on + strand, within IAI47_00755at 161.361 kb on + strand, within IAI47_00755at 161.361 kb on + strand, within IAI47_00755at 161.361 kb on + strand, within IAI47_00755at 161.361 kb on + strand, within IAI47_00755at 161.361 kb on + strand, within IAI47_00755at 161.361 kb on + strand, within IAI47_00755at 161.362 kb on - strand, within IAI47_00755at 161.362 kb on - strand, within IAI47_00755at 161.362 kb on - strand, within IAI47_00755at 161.362 kb on - strand, within IAI47_00755at 161.362 kb on - strand, within IAI47_00755at 161.362 kb on - strand, within IAI47_00755at 161.362 kb on - strand, within IAI47_00755at 161.362 kb on - strand, within IAI47_00755at 161.370 kb on + strand, within IAI47_00755at 161.371 kb on - strand, within IAI47_00755at 161.374 kb on + strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755at 161.375 kb on - strand, within IAI47_00755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 uM, anaerobic
remove
159,028 + +1.9
159,037 + +0.2
159,037 + -0.7
159,037 + -0.9
159,037 + -1.2
159,101 + -0.2
159,101 + +0.2
159,849 + +0.1
159,849 + -2.4
159,849 + +4.1
159,849 + -0.8
159,850 - +1.3
159,904 + -0.7
159,904 + +3.4
159,904 + +0.0
159,904 + -0.0
159,904 + -1.3
159,905 - +0.3
159,905 - -0.7
159,905 - -1.4
159,905 - -1.2
159,928 + -1.4
159,952 + IAI47_00750 0.10 +0.1
159,953 - IAI47_00750 0.11 +0.8
159,953 - IAI47_00750 0.11 +0.1
159,953 - IAI47_00750 0.11 -1.0
159,966 + IAI47_00750 0.13 -0.4
159,966 + IAI47_00750 0.13 +3.0
159,966 + IAI47_00750 0.13 -1.8
159,987 - IAI47_00750 0.18 -1.5
160,090 + IAI47_00750 0.39 +1.1
160,091 - IAI47_00750 0.40 +0.0
160,105 + IAI47_00750 0.43 +0.2
160,189 + IAI47_00750 0.60 -1.4
160,189 + IAI47_00750 0.60 +2.0
160,190 - IAI47_00750 0.61 +3.5
160,190 - IAI47_00750 0.61 -0.1
160,190 - IAI47_00750 0.61 -0.1
160,190 - IAI47_00750 0.61 +1.8
160,226 - IAI47_00750 0.68 -0.8
160,245 + IAI47_00750 0.72 +0.8
160,246 - IAI47_00750 0.72 -0.2
160,246 - IAI47_00750 0.72 -0.5
160,246 - IAI47_00750 0.72 +0.9
160,325 + IAI47_00750 0.89 -0.8
160,325 + IAI47_00750 0.89 +0.1
160,325 + IAI47_00750 0.89 -2.2
160,325 + IAI47_00750 0.89 +4.4
160,325 + IAI47_00750 0.89 -1.2
160,325 + IAI47_00750 0.89 +0.3
160,325 + IAI47_00750 0.89 +0.6
160,326 - IAI47_00750 0.89 -0.6
160,326 - IAI47_00750 0.89 -0.4
160,326 - IAI47_00750 0.89 +0.6
160,326 - IAI47_00750 0.89 +3.8
160,326 - IAI47_00750 0.89 -0.6
160,326 - IAI47_00750 0.89 +1.0
160,326 - IAI47_00750 0.89 +1.6
160,334 + -1.5
160,370 + -0.8
160,370 + +0.1
160,370 + +0.0
160,370 + +1.4
160,370 + -1.1
160,370 + +0.1
160,371 - +0.2
160,371 - +6.8
160,371 - -0.1
160,376 + +0.7
160,376 + -0.8
160,376 + -0.9
160,376 + -0.7
160,377 - -1.4
160,377 - +1.3
160,377 - -0.7
160,377 - -1.7
160,377 - -0.3
160,406 - -0.9
160,406 - -0.0
160,406 - +1.2
160,414 - -1.4
160,431 + -0.3
160,431 + +1.6
160,431 + -0.4
160,466 + -1.2
160,486 + -0.4
160,486 + +2.4
160,487 - +0.3
160,582 - IAI47_00755 0.12 +0.3
160,663 + IAI47_00755 0.18 +0.2
160,664 - IAI47_00755 0.18 -1.1
160,701 + IAI47_00755 0.21 +0.2
160,723 + IAI47_00755 0.23 +0.4
160,723 + IAI47_00755 0.23 +2.0
160,724 - IAI47_00755 0.23 -0.8
160,761 + IAI47_00755 0.25 -1.2
160,761 + IAI47_00755 0.25 -1.2
160,762 - IAI47_00755 0.25 -0.2
160,762 - IAI47_00755 0.25 -0.3
160,858 + IAI47_00755 0.32 -0.2
160,894 + IAI47_00755 0.35 -0.5
160,895 - IAI47_00755 0.35 -0.2
160,895 - IAI47_00755 0.35 -0.8
160,927 + IAI47_00755 0.37 -1.0
160,978 + IAI47_00755 0.41 -0.9
160,978 + IAI47_00755 0.41 -0.4
160,979 - IAI47_00755 0.41 +0.1
161,056 + IAI47_00755 0.47 +0.3
161,057 - IAI47_00755 0.47 +0.6
161,116 + IAI47_00755 0.51 -2.2
161,116 + IAI47_00755 0.51 +1.2
161,116 + IAI47_00755 0.51 -0.4
161,117 - IAI47_00755 0.51 -1.0
161,177 + IAI47_00755 0.55 +1.3
161,177 + IAI47_00755 0.55 +0.3
161,177 + IAI47_00755 0.55 -0.5
161,177 + IAI47_00755 0.55 +0.1
161,177 + IAI47_00755 0.55 -0.5
161,177 + IAI47_00755 0.55 -0.9
161,208 + IAI47_00755 0.58 -0.6
161,209 - IAI47_00755 0.58 -1.8
161,209 - IAI47_00755 0.58 -0.5
161,209 - IAI47_00755 0.58 -1.1
161,218 + IAI47_00755 0.58 +1.0
161,219 - IAI47_00755 0.58 +0.5
161,219 - IAI47_00755 0.58 +0.6
161,219 - IAI47_00755 0.58 -1.2
161,219 - IAI47_00755 0.58 +1.9
161,219 - IAI47_00755 0.58 -0.3
161,287 + IAI47_00755 0.63 -0.2
161,341 + IAI47_00755 0.67 +0.0
161,341 + IAI47_00755 0.67 +0.8
161,341 + IAI47_00755 0.67 -0.2
161,341 + IAI47_00755 0.67 -0.1
161,342 - IAI47_00755 0.67 +1.2
161,342 - IAI47_00755 0.67 +0.6
161,342 - IAI47_00755 0.67 -0.1
161,342 - IAI47_00755 0.67 +0.2
161,361 + IAI47_00755 0.69 +0.8
161,361 + IAI47_00755 0.69 -0.1
161,361 + IAI47_00755 0.69 -1.7
161,361 + IAI47_00755 0.69 +1.3
161,361 + IAI47_00755 0.69 -0.7
161,361 + IAI47_00755 0.69 +0.5
161,361 + IAI47_00755 0.69 +0.6
161,361 + IAI47_00755 0.69 -1.8
161,362 - IAI47_00755 0.69 +0.2
161,362 - IAI47_00755 0.69 +1.3
161,362 - IAI47_00755 0.69 -0.8
161,362 - IAI47_00755 0.69 -1.2
161,362 - IAI47_00755 0.69 -0.9
161,362 - IAI47_00755 0.69 -0.7
161,362 - IAI47_00755 0.69 -0.2
161,362 - IAI47_00755 0.69 +0.2
161,370 + IAI47_00755 0.69 +6.1
161,371 - IAI47_00755 0.69 -0.0
161,374 + IAI47_00755 0.70 -0.0
161,375 - IAI47_00755 0.70 -1.0
161,375 - IAI47_00755 0.70 -2.5
161,375 - IAI47_00755 0.70 -0.0
161,375 - IAI47_00755 0.70 -1.0
161,375 - IAI47_00755 0.70 +1.3
161,375 - IAI47_00755 0.70 -0.4
161,375 - IAI47_00755 0.70 -0.2
161,375 - IAI47_00755 0.70 -0.4
161,375 - IAI47_00755 0.70 +0.1

Or see this region's nucleotide sequence