Strain Fitness in Rahnella sp. WP5 around EX31_RS26080

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17410 and EX31_RS26080 are separated by 260 nucleotidesEX31_RS26080 and EX31_RS17415 are separated by 358 nucleotides EX31_RS17410: EX31_RS17410 - aspartate aminotransferase family protein, at 31,327 to 32,547 _RS17410 EX31_RS26080: EX31_RS26080 - hypothetical protein, at 32,808 to 33,005 _RS26080 EX31_RS17415: EX31_RS17415 - autoinducer 2 ABC transporter substrate-binding protein, at 33,364 to 34,350 _RS17415 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2 3at 31.815 kb on - strand, within EX31_RS17410at 31.829 kb on + strand, within EX31_RS17410at 31.830 kb on - strand, within EX31_RS17410at 31.830 kb on - strand, within EX31_RS17410at 31.830 kb on - strand, within EX31_RS17410at 31.862 kb on - strand, within EX31_RS17410at 31.862 kb on - strand, within EX31_RS17410at 32.169 kb on + strand, within EX31_RS17410at 32.172 kb on + strand, within EX31_RS17410at 32.177 kb on + strand, within EX31_RS17410at 32.177 kb on + strand, within EX31_RS17410at 32.178 kb on - strand, within EX31_RS17410at 32.412 kb on - strand, within EX31_RS17410at 32.412 kb on - strand, within EX31_RS17410at 32.412 kb on - strand, within EX31_RS17410at 32.412 kb on - strand, within EX31_RS17410at 32.463 kb on + strandat 32.464 kb on - strandat 32.464 kb on - strandat 32.480 kb on + strandat 32.481 kb on - strandat 32.547 kb on + strandat 32.547 kb on + strandat 32.547 kb on + strandat 32.547 kb on + strandat 32.548 kb on - strandat 32.548 kb on - strandat 32.548 kb on - strandat 32.549 kb on + strandat 32.549 kb on + strandat 32.549 kb on + strandat 32.549 kb on + strandat 32.549 kb on + strandat 32.549 kb on + strandat 32.550 kb on - strandat 32.550 kb on - strandat 32.550 kb on - strandat 32.550 kb on - strandat 32.550 kb on - strandat 32.550 kb on - strandat 32.638 kb on - strandat 32.721 kb on - strandat 32.792 kb on + strandat 32.879 kb on + strand, within EX31_RS26080at 32.880 kb on - strand, within EX31_RS26080at 32.880 kb on - strand, within EX31_RS26080at 32.880 kb on - strand, within EX31_RS26080at 32.891 kb on + strand, within EX31_RS26080at 32.916 kb on + strand, within EX31_RS26080at 32.975 kb on - strand, within EX31_RS26080at 33.168 kb on - strandat 33.283 kb on + strandat 33.288 kb on + strandat 33.289 kb on - strandat 33.307 kb on - strandat 33.328 kb on + strandat 33.328 kb on + strandat 33.328 kb on + strandat 33.329 kb on - strandat 33.329 kb on - strandat 33.348 kb on + strandat 33.358 kb on - strandat 33.358 kb on - strandat 33.416 kb on + strandat 33.417 kb on - strandat 33.417 kb on - strandat 33.417 kb on - strandat 33.417 kb on - strandat 33.449 kb on - strandat 33.449 kb on - strandat 33.449 kb on - strandat 33.547 kb on + strand, within EX31_RS17415at 33.548 kb on - strand, within EX31_RS17415at 33.770 kb on - strand, within EX31_RS17415at 33.862 kb on - strand, within EX31_RS17415at 33.885 kb on + strand, within EX31_RS17415at 33.885 kb on + strand, within EX31_RS17415at 33.890 kb on - strand, within EX31_RS17415at 33.890 kb on - strand, within EX31_RS17415at 33.957 kb on + strand, within EX31_RS17415at 33.957 kb on + strand, within EX31_RS17415at 33.957 kb on + strand, within EX31_RS17415at 33.957 kb on + strand, within EX31_RS17415at 33.958 kb on - strand, within EX31_RS17415at 33.958 kb on - strand, within EX31_RS17415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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31,815 - EX31_RS17410 0.40 +0.4
31,829 + EX31_RS17410 0.41 +0.2
31,830 - EX31_RS17410 0.41 +0.1
31,830 - EX31_RS17410 0.41 -0.3
31,830 - EX31_RS17410 0.41 -1.2
31,862 - EX31_RS17410 0.44 +2.3
31,862 - EX31_RS17410 0.44 +0.2
32,169 + EX31_RS17410 0.69 +0.8
32,172 + EX31_RS17410 0.69 -1.1
32,177 + EX31_RS17410 0.70 +0.2
32,177 + EX31_RS17410 0.70 -0.1
32,178 - EX31_RS17410 0.70 +0.4
32,412 - EX31_RS17410 0.89 -0.4
32,412 - EX31_RS17410 0.89 +0.3
32,412 - EX31_RS17410 0.89 -1.1
32,412 - EX31_RS17410 0.89 -1.2
32,463 + +0.4
32,464 - +0.5
32,464 - +0.5
32,480 + -0.7
32,481 - -2.2
32,547 + -0.3
32,547 + +0.6
32,547 + -0.1
32,547 + +0.6
32,548 - +0.9
32,548 - +0.4
32,548 - -1.0
32,549 + +2.9
32,549 + +0.3
32,549 + -1.1
32,549 + +0.3
32,549 + +0.9
32,549 + -0.7
32,550 - +0.0
32,550 - +0.2
32,550 - +0.1
32,550 - +0.1
32,550 - +1.2
32,550 - +0.0
32,638 - +1.4
32,721 - -0.4
32,792 + +0.2
32,879 + EX31_RS26080 0.36 -0.2
32,880 - EX31_RS26080 0.36 -1.1
32,880 - EX31_RS26080 0.36 +0.1
32,880 - EX31_RS26080 0.36 -2.7
32,891 + EX31_RS26080 0.42 -0.6
32,916 + EX31_RS26080 0.55 -1.7
32,975 - EX31_RS26080 0.84 -0.7
33,168 - -1.3
33,283 + -1.2
33,288 + -0.0
33,289 - -0.0
33,307 - -0.8
33,328 + +2.3
33,328 + -0.3
33,328 + +0.9
33,329 - +2.1
33,329 - +0.4
33,348 + +0.1
33,358 - -0.9
33,358 - -0.1
33,416 + +0.7
33,417 - +0.7
33,417 - -0.7
33,417 - -0.2
33,417 - -0.3
33,449 - -0.8
33,449 - -0.1
33,449 - +0.9
33,547 + EX31_RS17415 0.19 -1.5
33,548 - EX31_RS17415 0.19 -0.4
33,770 - EX31_RS17415 0.41 +0.9
33,862 - EX31_RS17415 0.50 +0.6
33,885 + EX31_RS17415 0.53 -0.7
33,885 + EX31_RS17415 0.53 -0.6
33,890 - EX31_RS17415 0.53 +0.4
33,890 - EX31_RS17415 0.53 -1.4
33,957 + EX31_RS17415 0.60 +0.2
33,957 + EX31_RS17415 0.60 -1.1
33,957 + EX31_RS17415 0.60 +0.9
33,957 + EX31_RS17415 0.60 -0.2
33,958 - EX31_RS17415 0.60 +1.6
33,958 - EX31_RS17415 0.60 +0.9

Or see this region's nucleotide sequence