Strain Fitness in Rahnella sp. WP5 around EX31_RS24720

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24715 and EX31_RS24720 are separated by 207 nucleotidesEX31_RS24720 and EX31_RS24725 overlap by 4 nucleotides EX31_RS24715: EX31_RS24715 - L-serine ammonia-lyase, at 712,709 to 714,073 _RS24715 EX31_RS24720: EX31_RS24720 - CoA pyrophosphatase, at 714,281 to 714,883 _RS24720 EX31_RS24725: EX31_RS24725 - aminodeoxychorismate synthase component 1, at 714,880 to 716,256 _RS24725 Position (kb) 714 715Strain fitness (log2 ratio) -2 -1 0 1 2 3at 713.327 kb on - strand, within EX31_RS24715at 713.470 kb on + strand, within EX31_RS24715at 713.470 kb on + strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.471 kb on - strand, within EX31_RS24715at 713.569 kb on - strand, within EX31_RS24715at 713.646 kb on + strand, within EX31_RS24715at 713.646 kb on + strand, within EX31_RS24715at 713.646 kb on + strand, within EX31_RS24715at 713.647 kb on - strand, within EX31_RS24715at 713.647 kb on - strand, within EX31_RS24715at 713.647 kb on - strand, within EX31_RS24715at 713.659 kb on - strand, within EX31_RS24715at 713.659 kb on - strand, within EX31_RS24715at 713.738 kb on - strand, within EX31_RS24715at 713.815 kb on + strand, within EX31_RS24715at 713.816 kb on - strand, within EX31_RS24715at 713.870 kb on + strand, within EX31_RS24715at 713.871 kb on - strand, within EX31_RS24715at 713.902 kb on + strand, within EX31_RS24715at 713.903 kb on - strand, within EX31_RS24715at 713.903 kb on - strand, within EX31_RS24715at 714.081 kb on - strandat 714.092 kb on - strandat 714.092 kb on - strandat 714.092 kb on - strandat 714.126 kb on + strandat 714.126 kb on + strandat 714.126 kb on + strandat 714.127 kb on - strandat 714.187 kb on + strandat 714.187 kb on + strandat 714.187 kb on + strandat 714.187 kb on + strandat 714.187 kb on + strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.188 kb on - strandat 714.189 kb on + strandat 714.189 kb on + strandat 714.189 kb on + strandat 714.189 kb on + strandat 714.190 kb on - strandat 714.190 kb on - strandat 714.190 kb on - strandat 714.190 kb on - strandat 714.195 kb on - strandat 714.195 kb on - strandat 714.195 kb on - strandat 714.235 kb on + strandat 714.242 kb on - strandat 714.242 kb on - strandat 714.264 kb on + strandat 714.270 kb on - strandat 714.363 kb on + strand, within EX31_RS24720at 714.363 kb on + strand, within EX31_RS24720at 714.485 kb on + strand, within EX31_RS24720at 714.485 kb on + strand, within EX31_RS24720at 714.486 kb on - strand, within EX31_RS24720at 714.486 kb on - strand, within EX31_RS24720at 714.486 kb on - strand, within EX31_RS24720at 714.563 kb on + strand, within EX31_RS24720at 714.563 kb on + strand, within EX31_RS24720at 714.563 kb on + strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.564 kb on - strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.565 kb on + strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.566 kb on - strand, within EX31_RS24720at 714.625 kb on + strand, within EX31_RS24720at 714.626 kb on - strand, within EX31_RS24720at 714.686 kb on - strand, within EX31_RS24720at 714.855 kb on - strandat 714.855 kb on - strandat 714.890 kb on - strandat 714.890 kb on - strandat 714.942 kb on - strandat 715.064 kb on + strand, within EX31_RS24725at 715.065 kb on - strand, within EX31_RS24725at 715.065 kb on - strand, within EX31_RS24725at 715.065 kb on - strand, within EX31_RS24725at 715.334 kb on - strand, within EX31_RS24725at 715.334 kb on - strand, within EX31_RS24725at 715.642 kb on - strand, within EX31_RS24725at 715.642 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.644 kb on - strand, within EX31_RS24725at 715.672 kb on + strand, within EX31_RS24725at 715.690 kb on - strand, within EX31_RS24725at 715.690 kb on - strand, within EX31_RS24725at 715.711 kb on + strand, within EX31_RS24725at 715.712 kb on - strand, within EX31_RS24725at 715.712 kb on - strand, within EX31_RS24725at 715.762 kb on + strand, within EX31_RS24725at 715.763 kb on - strand, within EX31_RS24725at 715.807 kb on + strand, within EX31_RS24725at 715.808 kb on - strand, within EX31_RS24725at 715.808 kb on - strand, within EX31_RS24725at 715.838 kb on + strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725at 715.839 kb on - strand, within EX31_RS24725

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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713,327 - EX31_RS24715 0.45 -1.8
713,470 + EX31_RS24715 0.56 -1.3
713,470 + EX31_RS24715 0.56 +0.4
713,471 - EX31_RS24715 0.56 +0.1
713,471 - EX31_RS24715 0.56 -0.0
713,471 - EX31_RS24715 0.56 -0.1
713,471 - EX31_RS24715 0.56 +0.4
713,471 - EX31_RS24715 0.56 -1.6
713,471 - EX31_RS24715 0.56 -0.0
713,471 - EX31_RS24715 0.56 -1.2
713,471 - EX31_RS24715 0.56 +0.1
713,471 - EX31_RS24715 0.56 -0.9
713,569 - EX31_RS24715 0.63 -0.7
713,646 + EX31_RS24715 0.69 +0.4
713,646 + EX31_RS24715 0.69 -1.1
713,646 + EX31_RS24715 0.69 +1.3
713,647 - EX31_RS24715 0.69 +0.3
713,647 - EX31_RS24715 0.69 -2.0
713,647 - EX31_RS24715 0.69 +0.8
713,659 - EX31_RS24715 0.70 +0.1
713,659 - EX31_RS24715 0.70 -0.3
713,738 - EX31_RS24715 0.75 +2.9
713,815 + EX31_RS24715 0.81 -1.4
713,816 - EX31_RS24715 0.81 +0.5
713,870 + EX31_RS24715 0.85 +0.0
713,871 - EX31_RS24715 0.85 -1.3
713,902 + EX31_RS24715 0.87 +1.1
713,903 - EX31_RS24715 0.87 +1.9
713,903 - EX31_RS24715 0.87 -2.0
714,081 - -0.4
714,092 - +0.9
714,092 - -0.7
714,092 - -0.8
714,126 + -0.4
714,126 + +0.7
714,126 + -1.1
714,127 - -0.2
714,187 + +3.5
714,187 + -0.0
714,187 + -0.8
714,187 + +0.6
714,187 + +0.9
714,188 - +0.2
714,188 - -0.2
714,188 - -0.3
714,188 - -0.0
714,188 - +0.3
714,188 - -1.4
714,188 - -0.9
714,189 + +0.8
714,189 + -2.3
714,189 + +0.3
714,189 + -0.1
714,190 - +0.3
714,190 - -0.2
714,190 - +1.2
714,190 - +0.9
714,195 - -1.1
714,195 - +1.0
714,195 - +0.1
714,235 + +0.2
714,242 - -0.6
714,242 - +1.3
714,264 + -0.2
714,270 - -0.7
714,363 + EX31_RS24720 0.14 -1.3
714,363 + EX31_RS24720 0.14 +1.2
714,485 + EX31_RS24720 0.34 +0.1
714,485 + EX31_RS24720 0.34 -0.1
714,486 - EX31_RS24720 0.34 +0.3
714,486 - EX31_RS24720 0.34 -1.1
714,486 - EX31_RS24720 0.34 +0.0
714,563 + EX31_RS24720 0.47 +1.1
714,563 + EX31_RS24720 0.47 -1.3
714,563 + EX31_RS24720 0.47 +0.6
714,564 - EX31_RS24720 0.47 +0.1
714,564 - EX31_RS24720 0.47 -0.9
714,564 - EX31_RS24720 0.47 +0.5
714,564 - EX31_RS24720 0.47 -1.2
714,564 - EX31_RS24720 0.47 +1.5
714,564 - EX31_RS24720 0.47 -1.3
714,564 - EX31_RS24720 0.47 -0.6
714,565 + EX31_RS24720 0.47 +0.2
714,565 + EX31_RS24720 0.47 +0.6
714,565 + EX31_RS24720 0.47 +0.5
714,565 + EX31_RS24720 0.47 -0.9
714,565 + EX31_RS24720 0.47 +0.3
714,565 + EX31_RS24720 0.47 -1.1
714,565 + EX31_RS24720 0.47 -0.6
714,565 + EX31_RS24720 0.47 +1.3
714,566 - EX31_RS24720 0.47 +0.4
714,566 - EX31_RS24720 0.47 -0.3
714,566 - EX31_RS24720 0.47 +0.3
714,566 - EX31_RS24720 0.47 +0.2
714,566 - EX31_RS24720 0.47 -2.5
714,566 - EX31_RS24720 0.47 -1.2
714,566 - EX31_RS24720 0.47 -0.1
714,566 - EX31_RS24720 0.47 -0.8
714,566 - EX31_RS24720 0.47 +1.0
714,566 - EX31_RS24720 0.47 +0.6
714,566 - EX31_RS24720 0.47 -0.1
714,625 + EX31_RS24720 0.57 +0.5
714,626 - EX31_RS24720 0.57 +0.4
714,686 - EX31_RS24720 0.67 -0.4
714,855 - +0.6
714,855 - -0.9
714,890 - -0.5
714,890 - -0.6
714,942 - -0.0
715,064 + EX31_RS24725 0.13 -0.2
715,065 - EX31_RS24725 0.13 -1.4
715,065 - EX31_RS24725 0.13 -0.4
715,065 - EX31_RS24725 0.13 -0.0
715,334 - EX31_RS24725 0.33 -1.0
715,334 - EX31_RS24725 0.33 +1.0
715,642 - EX31_RS24725 0.55 -0.1
715,642 - EX31_RS24725 0.55 -0.5
715,644 - EX31_RS24725 0.55 -0.3
715,644 - EX31_RS24725 0.55 -0.9
715,644 - EX31_RS24725 0.55 +0.5
715,644 - EX31_RS24725 0.55 +0.7
715,672 + EX31_RS24725 0.58 +0.0
715,690 - EX31_RS24725 0.59 +0.9
715,690 - EX31_RS24725 0.59 +0.9
715,711 + EX31_RS24725 0.60 +1.7
715,712 - EX31_RS24725 0.60 -0.8
715,712 - EX31_RS24725 0.60 +1.6
715,762 + EX31_RS24725 0.64 -0.9
715,763 - EX31_RS24725 0.64 -0.3
715,807 + EX31_RS24725 0.67 +0.1
715,808 - EX31_RS24725 0.67 +1.7
715,808 - EX31_RS24725 0.67 -0.8
715,838 + EX31_RS24725 0.70 -0.3
715,839 - EX31_RS24725 0.70 +0.3
715,839 - EX31_RS24725 0.70 +0.7
715,839 - EX31_RS24725 0.70 +1.3

Or see this region's nucleotide sequence