Strain Fitness in Rahnella sp. WP5 around EX31_RS19215

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19210 and EX31_RS19215 are separated by 322 nucleotidesEX31_RS19215 and EX31_RS19220 are separated by 24 nucleotides EX31_RS19210: EX31_RS19210 - nucleoid-associated protein YejK, at 438,550 to 439,554 _RS19210 EX31_RS19215: EX31_RS19215 - YejL family protein, at 439,877 to 440,104 _RS19215 EX31_RS19220: EX31_RS19220 - DUF3413 domain-containing protein, at 440,129 to 441,910 _RS19220 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1at 438.890 kb on + strand, within EX31_RS19210at 438.891 kb on - strand, within EX31_RS19210at 438.891 kb on - strand, within EX31_RS19210at 438.891 kb on - strand, within EX31_RS19210at 438.891 kb on - strand, within EX31_RS19210at 438.891 kb on - strand, within EX31_RS19210at 438.928 kb on - strand, within EX31_RS19210at 439.102 kb on - strand, within EX31_RS19210at 439.102 kb on - strand, within EX31_RS19210at 439.136 kb on + strand, within EX31_RS19210at 439.137 kb on - strand, within EX31_RS19210at 439.177 kb on - strand, within EX31_RS19210at 439.207 kb on + strand, within EX31_RS19210at 439.208 kb on - strand, within EX31_RS19210at 439.208 kb on - strand, within EX31_RS19210at 439.211 kb on + strand, within EX31_RS19210at 439.212 kb on - strand, within EX31_RS19210at 439.212 kb on - strand, within EX31_RS19210at 439.395 kb on - strand, within EX31_RS19210at 439.395 kb on - strand, within EX31_RS19210at 439.395 kb on - strand, within EX31_RS19210at 439.415 kb on + strand, within EX31_RS19210at 439.415 kb on + strand, within EX31_RS19210at 439.415 kb on + strand, within EX31_RS19210at 439.416 kb on - strand, within EX31_RS19210at 439.416 kb on - strand, within EX31_RS19210at 439.473 kb on + strandat 439.474 kb on - strandat 439.587 kb on + strandat 439.588 kb on - strandat 439.659 kb on + strandat 439.660 kb on - strandat 439.660 kb on - strandat 439.660 kb on - strandat 439.689 kb on + strandat 439.745 kb on - strandat 439.831 kb on + strandat 439.836 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.876 kb on + strandat 439.876 kb on + strandat 439.876 kb on + strandat 439.895 kb on + strandat 439.993 kb on + strand, within EX31_RS19215at 439.993 kb on + strand, within EX31_RS19215at 440.008 kb on + strand, within EX31_RS19215at 440.008 kb on + strand, within EX31_RS19215at 440.011 kb on + strand, within EX31_RS19215at 440.011 kb on + strand, within EX31_RS19215at 440.014 kb on + strand, within EX31_RS19215at 440.082 kb on + strandat 440.861 kb on + strand, within EX31_RS19220at 440.872 kb on + strand, within EX31_RS19220at 440.872 kb on + strand, within EX31_RS19220at 440.905 kb on + strand, within EX31_RS19220at 440.905 kb on + strand, within EX31_RS19220at 440.905 kb on + strand, within EX31_RS19220at 440.923 kb on - strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.990 kb on - strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.077 kb on - strand, within EX31_RS19220at 441.077 kb on - strand, within EX31_RS19220at 441.077 kb on - strand, within EX31_RS19220

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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438,890 + EX31_RS19210 0.34 +1.6
438,891 - EX31_RS19210 0.34 +1.1
438,891 - EX31_RS19210 0.34 -0.8
438,891 - EX31_RS19210 0.34 -0.8
438,891 - EX31_RS19210 0.34 +0.0
438,891 - EX31_RS19210 0.34 +0.7
438,928 - EX31_RS19210 0.38 -0.7
439,102 - EX31_RS19210 0.55 -3.1
439,102 - EX31_RS19210 0.55 +1.1
439,136 + EX31_RS19210 0.58 -1.7
439,137 - EX31_RS19210 0.58 +0.0
439,177 - EX31_RS19210 0.62 -2.5
439,207 + EX31_RS19210 0.65 -1.0
439,208 - EX31_RS19210 0.65 +0.5
439,208 - EX31_RS19210 0.65 -0.2
439,211 + EX31_RS19210 0.66 +0.6
439,212 - EX31_RS19210 0.66 -0.2
439,212 - EX31_RS19210 0.66 +0.3
439,395 - EX31_RS19210 0.84 -0.1
439,395 - EX31_RS19210 0.84 -2.0
439,395 - EX31_RS19210 0.84 -1.1
439,415 + EX31_RS19210 0.86 -0.5
439,415 + EX31_RS19210 0.86 -2.8
439,415 + EX31_RS19210 0.86 -1.5
439,416 - EX31_RS19210 0.86 -0.4
439,416 - EX31_RS19210 0.86 -1.3
439,473 + +0.2
439,474 - +0.2
439,587 + +0.1
439,588 - -0.2
439,659 + +0.6
439,660 - -0.3
439,660 - +1.4
439,660 - -0.4
439,689 + -0.6
439,745 - +0.1
439,831 + +1.7
439,836 + -0.2
439,871 + +0.7
439,871 + -0.9
439,871 + +0.2
439,871 + +0.6
439,871 + +0.6
439,871 + -0.7
439,871 + -1.2
439,871 + +1.5
439,876 + -0.9
439,876 + -1.3
439,876 + +0.8
439,895 + +0.0
439,993 + EX31_RS19215 0.51 +1.2
439,993 + EX31_RS19215 0.51 +0.4
440,008 + EX31_RS19215 0.57 -0.4
440,008 + EX31_RS19215 0.57 +0.7
440,011 + EX31_RS19215 0.59 +0.5
440,011 + EX31_RS19215 0.59 +0.2
440,014 + EX31_RS19215 0.60 +0.3
440,082 + +1.3
440,861 + EX31_RS19220 0.41 +0.4
440,872 + EX31_RS19220 0.42 +0.3
440,872 + EX31_RS19220 0.42 -0.5
440,905 + EX31_RS19220 0.44 -0.1
440,905 + EX31_RS19220 0.44 +1.3
440,905 + EX31_RS19220 0.44 -1.0
440,923 - EX31_RS19220 0.45 -0.0
440,989 + EX31_RS19220 0.48 -0.5
440,989 + EX31_RS19220 0.48 +0.3
440,989 + EX31_RS19220 0.48 +0.5
440,989 + EX31_RS19220 0.48 -0.1
440,989 + EX31_RS19220 0.48 +0.1
440,989 + EX31_RS19220 0.48 -0.2
440,989 + EX31_RS19220 0.48 +0.6
440,990 - EX31_RS19220 0.48 -0.2
441,074 + EX31_RS19220 0.53 +0.1
441,074 + EX31_RS19220 0.53 +0.6
441,074 + EX31_RS19220 0.53 -0.6
441,074 + EX31_RS19220 0.53 -0.4
441,074 + EX31_RS19220 0.53 -1.1
441,074 + EX31_RS19220 0.53 -1.0
441,074 + EX31_RS19220 0.53 -2.1
441,074 + EX31_RS19220 0.53 +0.1
441,074 + EX31_RS19220 0.53 -1.2
441,074 + EX31_RS19220 0.53 -0.1
441,075 - EX31_RS19220 0.53 -1.6
441,075 - EX31_RS19220 0.53 +1.2
441,075 - EX31_RS19220 0.53 -0.7
441,075 - EX31_RS19220 0.53 -0.1
441,075 - EX31_RS19220 0.53 +0.1
441,075 - EX31_RS19220 0.53 -0.3
441,076 + EX31_RS19220 0.53 -1.0
441,076 + EX31_RS19220 0.53 +1.4
441,076 + EX31_RS19220 0.53 -0.0
441,076 + EX31_RS19220 0.53 -1.4
441,076 + EX31_RS19220 0.53 -1.7
441,076 + EX31_RS19220 0.53 +0.0
441,076 + EX31_RS19220 0.53 -0.1
441,076 + EX31_RS19220 0.53 -0.1
441,077 - EX31_RS19220 0.53 -0.3
441,077 - EX31_RS19220 0.53 -0.1
441,077 - EX31_RS19220 0.53 -0.2

Or see this region's nucleotide sequence