Strain Fitness in Rahnella sp. WP5 around EX31_RS18515

Experiment: L-Glutamine (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18510 and EX31_RS18515 are separated by 106 nucleotidesEX31_RS18515 and EX31_RS18520 are separated by 7 nucleotidesEX31_RS18520 and EX31_RS18525 are separated by 194 nucleotides EX31_RS18510: EX31_RS18510 - serine--tRNA ligase, at 273,576 to 274,868 _RS18510 EX31_RS18515: EX31_RS18515 - replication-associated recombination protein A, at 274,975 to 276,318 _RS18515 EX31_RS18520: EX31_RS18520 - outer membrane lipoprotein chaperone LolA, at 276,326 to 276,937 _RS18520 EX31_RS18525: EX31_RS18525 - DNA translocase FtsK, at 277,132 to 280,578 _RS18525 Position (kb) 274 275 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 274.946 kb on - strandat 274.946 kb on - strandat 274.960 kb on - strandat 274.977 kb on - strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.072 kb on + strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.073 kb on - strandat 275.075 kb on + strandat 275.076 kb on - strandat 275.105 kb on + strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.106 kb on - strandat 275.124 kb on - strand, within EX31_RS18515at 275.124 kb on - strand, within EX31_RS18515at 275.124 kb on - strand, within EX31_RS18515at 275.200 kb on - strand, within EX31_RS18515at 275.200 kb on - strand, within EX31_RS18515at 275.270 kb on + strand, within EX31_RS18515at 275.270 kb on + strand, within EX31_RS18515at 275.271 kb on - strand, within EX31_RS18515at 275.272 kb on + strand, within EX31_RS18515at 275.273 kb on - strand, within EX31_RS18515at 275.273 kb on - strand, within EX31_RS18515at 275.280 kb on + strand, within EX31_RS18515at 275.280 kb on + strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.281 kb on - strand, within EX31_RS18515at 275.304 kb on - strand, within EX31_RS18515at 275.304 kb on - strand, within EX31_RS18515at 275.356 kb on - strand, within EX31_RS18515at 275.356 kb on - strand, within EX31_RS18515at 275.450 kb on + strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.451 kb on - strand, within EX31_RS18515at 275.492 kb on + strand, within EX31_RS18515at 275.493 kb on - strand, within EX31_RS18515at 275.493 kb on - strand, within EX31_RS18515at 275.529 kb on + strand, within EX31_RS18515at 275.530 kb on - strand, within EX31_RS18515at 275.553 kb on - strand, within EX31_RS18515at 275.568 kb on + strand, within EX31_RS18515at 275.612 kb on - strand, within EX31_RS18515at 275.832 kb on + strand, within EX31_RS18515at 275.832 kb on + strand, within EX31_RS18515at 275.836 kb on + strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.837 kb on - strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.840 kb on + strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515at 275.841 kb on - strand, within EX31_RS18515at 275.913 kb on + strand, within EX31_RS18515at 275.913 kb on + strand, within EX31_RS18515at 275.913 kb on + strand, within EX31_RS18515at 275.913 kb on + strand, within EX31_RS18515at 275.914 kb on - strand, within EX31_RS18515at 275.914 kb on - strand, within EX31_RS18515at 276.055 kb on - strand, within EX31_RS18515at 276.077 kb on - strand, within EX31_RS18515at 276.077 kb on - strand, within EX31_RS18515at 276.077 kb on - strand, within EX31_RS18515at 276.078 kb on + strand, within EX31_RS18515at 276.078 kb on + strand, within EX31_RS18515at 276.078 kb on + strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.079 kb on - strand, within EX31_RS18515at 276.234 kb on + strandat 276.234 kb on + strandat 276.234 kb on + strandat 276.234 kb on + strandat 276.235 kb on - strandat 276.235 kb on - strandat 276.235 kb on - strandat 276.236 kb on + strandat 276.236 kb on + strandat 276.236 kb on + strandat 276.237 kb on - strandat 276.237 kb on - strandat 276.312 kb on + strandat 276.322 kb on - strandat 276.322 kb on - strandat 276.322 kb on - strandat 276.322 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.948 kb on - strandat 276.984 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.001 kb on - strandat 277.066 kb on + strandat 277.105 kb on + strandat 277.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; no shaking
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274,946 - -2.9
274,946 - +0.9
274,960 - -3.0
274,977 - -1.1
275,072 + -0.2
275,072 + -0.5
275,072 + -0.6
275,072 + -0.1
275,073 - +1.1
275,073 - -2.9
275,073 - -0.4
275,073 - +1.1
275,073 - +1.0
275,075 + -0.4
275,076 - -0.4
275,105 + +0.5
275,106 - +0.0
275,106 - -0.9
275,106 - -0.5
275,106 - -1.6
275,124 - EX31_RS18515 0.11 -1.0
275,124 - EX31_RS18515 0.11 -1.2
275,124 - EX31_RS18515 0.11 +1.4
275,200 - EX31_RS18515 0.17 +0.9
275,200 - EX31_RS18515 0.17 +0.4
275,270 + EX31_RS18515 0.22 -1.3
275,270 + EX31_RS18515 0.22 -1.3
275,271 - EX31_RS18515 0.22 -0.3
275,272 + EX31_RS18515 0.22 +0.2
275,273 - EX31_RS18515 0.22 +0.4
275,273 - EX31_RS18515 0.22 +0.0
275,280 + EX31_RS18515 0.23 -1.1
275,280 + EX31_RS18515 0.23 +0.9
275,281 - EX31_RS18515 0.23 +0.2
275,281 - EX31_RS18515 0.23 +0.4
275,281 - EX31_RS18515 0.23 +0.9
275,281 - EX31_RS18515 0.23 -2.1
275,304 - EX31_RS18515 0.24 +0.5
275,304 - EX31_RS18515 0.24 +0.4
275,356 - EX31_RS18515 0.28 -0.6
275,356 - EX31_RS18515 0.28 +0.4
275,450 + EX31_RS18515 0.35 +1.2
275,451 - EX31_RS18515 0.35 -0.6
275,451 - EX31_RS18515 0.35 +0.0
275,451 - EX31_RS18515 0.35 +3.3
275,451 - EX31_RS18515 0.35 -0.2
275,492 + EX31_RS18515 0.38 +1.2
275,493 - EX31_RS18515 0.39 -0.1
275,493 - EX31_RS18515 0.39 +0.7
275,529 + EX31_RS18515 0.41 +0.7
275,530 - EX31_RS18515 0.41 -0.0
275,553 - EX31_RS18515 0.43 -2.1
275,568 + EX31_RS18515 0.44 -0.2
275,612 - EX31_RS18515 0.47 -0.9
275,832 + EX31_RS18515 0.64 +3.5
275,832 + EX31_RS18515 0.64 -1.0
275,836 + EX31_RS18515 0.64 +0.4
275,837 - EX31_RS18515 0.64 -0.2
275,837 - EX31_RS18515 0.64 -0.8
275,837 - EX31_RS18515 0.64 +0.4
275,837 - EX31_RS18515 0.64 -0.4
275,837 - EX31_RS18515 0.64 -0.4
275,840 + EX31_RS18515 0.64 +1.1
275,840 + EX31_RS18515 0.64 +1.6
275,840 + EX31_RS18515 0.64 -0.6
275,841 - EX31_RS18515 0.64 -2.3
275,841 - EX31_RS18515 0.64 +0.0
275,841 - EX31_RS18515 0.64 -0.1
275,913 + EX31_RS18515 0.70 -1.1
275,913 + EX31_RS18515 0.70 -2.1
275,913 + EX31_RS18515 0.70 -0.2
275,913 + EX31_RS18515 0.70 +0.2
275,914 - EX31_RS18515 0.70 +0.9
275,914 - EX31_RS18515 0.70 +1.9
276,055 - EX31_RS18515 0.80 -0.4
276,077 - EX31_RS18515 0.82 -1.2
276,077 - EX31_RS18515 0.82 -0.4
276,077 - EX31_RS18515 0.82 -1.2
276,078 + EX31_RS18515 0.82 -0.2
276,078 + EX31_RS18515 0.82 -0.8
276,078 + EX31_RS18515 0.82 -0.4
276,079 - EX31_RS18515 0.82 -0.8
276,079 - EX31_RS18515 0.82 -0.3
276,079 - EX31_RS18515 0.82 +0.6
276,079 - EX31_RS18515 0.82 +0.3
276,079 - EX31_RS18515 0.82 +0.4
276,079 - EX31_RS18515 0.82 +1.4
276,079 - EX31_RS18515 0.82 +0.2
276,079 - EX31_RS18515 0.82 +0.0
276,079 - EX31_RS18515 0.82 +0.4
276,079 - EX31_RS18515 0.82 -0.7
276,079 - EX31_RS18515 0.82 -0.1
276,079 - EX31_RS18515 0.82 -0.2
276,079 - EX31_RS18515 0.82 +1.8
276,234 + +1.5
276,234 + -0.2
276,234 + -1.2
276,234 + +0.8
276,235 - -0.0
276,235 - -0.1
276,235 - -1.1
276,236 + -0.4
276,236 + -1.8
276,236 + -0.9
276,237 - -0.1
276,237 - +0.4
276,312 + +0.4
276,322 - +0.9
276,322 - +0.0
276,322 - -1.1
276,322 - -1.8
276,948 - +1.0
276,948 - +0.7
276,948 - +0.2
276,948 - -1.0
276,948 - -0.4
276,948 - +0.9
276,948 - -0.6
276,948 - +0.6
276,984 - +0.3
277,001 - +3.5
277,001 - +0.2
277,001 - +0.1
277,001 - +0.1
277,001 - +0.1
277,001 - +1.2
277,001 - +0.4
277,066 + +0.7
277,105 + -0.1
277,295 - -1.5

Or see this region's nucleotide sequence